HEADER TRANSCRIPTION/ANTIBIOTIC 18-OCT-10 3P9T TITLE SMET-TRICLOSAN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 GENE: SMET; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS TRANSCRIPTION REPRESSOR, ANTIBACTERIAL, ANTIFUNGAL, TRANSCRIPTION- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.HERNANDEZ,F.M.RUIZ,A.ROMERO,J.L.MARTINEZ REVDAT 3 06-SEP-23 3P9T 1 REMARK SEQADV REVDAT 2 21-SEP-11 3P9T 1 HEADER KEYWDS REVDAT 1 10-AUG-11 3P9T 0 JRNL AUTH A.HERNANDEZ,F.M.RUIZ,A.ROMERO,J.L.MARTINEZ JRNL TITL THE BINDING OF TRICLOSAN TO SMET, THE REPRESSOR OF THE JRNL TITL 2 MULTIDRUG EFFLUX PUMP SMEDEF, INDUCES ANTIBIOTIC RESISTANCE JRNL TITL 3 IN STENOTROPHOMONAS MALTOPHILIA. JRNL REF PLOS PATHOG. V. 7 02103 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21738470 JRNL DOI 10.1371/JOURNAL.PPAT.1002103 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 2.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3460 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4679 ; 1.839 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.530 ;22.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;16.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2619 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2128 ; 0.625 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3418 ; 1.198 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1332 ; 2.495 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1255 ; 4.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0980 -7.2000 40.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.3226 REMARK 3 T33: 0.0946 T12: 0.0115 REMARK 3 T13: 0.0356 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 5.9229 L22: 1.6893 REMARK 3 L33: 3.2687 L12: 0.1272 REMARK 3 L13: 0.4613 L23: -1.1621 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: 0.0892 S13: 0.4084 REMARK 3 S21: -0.0696 S22: -0.0471 S23: 0.0136 REMARK 3 S31: 0.0091 S32: -0.0423 S33: -0.0624 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6250 -2.9510 32.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.3496 REMARK 3 T33: 0.0708 T12: 0.0105 REMARK 3 T13: 0.0009 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.0745 L22: 0.9378 REMARK 3 L33: 2.3711 L12: 0.0469 REMARK 3 L13: 0.5801 L23: 0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.2443 S13: -0.0604 REMARK 3 S21: 0.0947 S22: -0.0942 S23: -0.1556 REMARK 3 S31: 0.4501 S32: 0.1636 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3820 2.4980 26.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.3581 REMARK 3 T33: 0.0161 T12: -0.0235 REMARK 3 T13: 0.0016 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.0924 L22: 1.3633 REMARK 3 L33: 2.9260 L12: 0.6175 REMARK 3 L13: -0.1762 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: -0.0922 S13: 0.0465 REMARK 3 S21: 0.1117 S22: -0.0733 S23: -0.0023 REMARK 3 S31: 0.0678 S32: -0.3107 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8510 -6.4610 4.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.7336 REMARK 3 T33: 0.2053 T12: 0.1435 REMARK 3 T13: 0.0180 T23: -0.1420 REMARK 3 L TENSOR REMARK 3 L11: 14.0582 L22: 1.8268 REMARK 3 L33: 2.6256 L12: -2.8875 REMARK 3 L13: -1.4641 L23: 0.5048 REMARK 3 S TENSOR REMARK 3 S11: -0.5006 S12: -1.0605 S13: 0.1668 REMARK 3 S21: -0.0403 S22: 0.3888 S23: -0.2623 REMARK 3 S31: -0.0495 S32: 0.2981 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4620 3.0650 6.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.3350 REMARK 3 T33: 0.1226 T12: -0.0097 REMARK 3 T13: 0.0336 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.5287 L22: 2.4768 REMARK 3 L33: 1.7066 L12: -0.9575 REMARK 3 L13: 0.4893 L23: -0.4371 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: 0.1232 S13: 0.1837 REMARK 3 S21: -0.1304 S22: -0.1184 S23: -0.4569 REMARK 3 S31: -0.0127 S32: 0.4100 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 154 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6360 -0.0430 11.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.2946 T22: 0.2799 REMARK 3 T33: 0.0126 T12: -0.0227 REMARK 3 T13: 0.0061 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.1879 L22: 5.1479 REMARK 3 L33: 3.3948 L12: -1.2316 REMARK 3 L13: 0.9567 L23: 0.5105 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.0418 S13: -0.0950 REMARK 3 S21: -0.0454 S22: 0.1213 S23: -0.0112 REMARK 3 S31: 0.1287 S32: 0.0764 S33: -0.1798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : HORIZONTALLY SIDE DIFFRACTING REMARK 200 SILICON 111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 48.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.57000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2W53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 175 MM LI2SO4, 100 MM TRIS PH 8.5, 27% REMARK 280 V/V PEG MME 2K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 ALA A 219 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 ASP B 8 REMARK 465 THR B 9 REMARK 465 ALA B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 76 O PRO A 217 1.92 REMARK 500 OG1 THR B 211 O HOH B 278 2.16 REMARK 500 O ARG B 123 N THR B 126 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 83 NH2 ARG B 188 2455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 147 CA ALA B 147 CB 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 140 CG - SD - CE ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 154 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 82 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 188 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET B 191 CG - SD - CE ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 43 -140.33 -135.49 REMARK 500 SER A 116 -173.90 64.59 REMARK 500 ARG B 123 -42.24 -144.99 REMARK 500 PRO B 217 -174.97 -42.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCL A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCL A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 220 DBREF 3P9T A 1 219 UNP Q8KLP4 Q8KLP4_STEMA 1 219 DBREF 3P9T B 1 219 UNP Q8KLP4 Q8KLP4_STEMA 1 219 SEQADV 3P9T LEU A 166 UNP Q8KLP4 GLN 166 ENGINEERED MUTATION SEQADV 3P9T LEU B 166 UNP Q8KLP4 GLN 166 ENGINEERED MUTATION SEQRES 1 A 219 MET ALA ARG LYS THR LYS GLU ASP THR GLN ALA THR ARG SEQRES 2 A 219 GLU GLY ILE LEU ASP ALA ALA GLU ALA CYS PHE HIS GLU SEQRES 3 A 219 HIS GLY VAL ALA ARG THR THR LEU GLU MET ILE GLY ALA SEQRES 4 A 219 ARG ALA GLY TYR THR ARG GLY ALA VAL TYR TRP HIS PHE SEQRES 5 A 219 LYS ASN LYS SER GLU VAL LEU ALA ALA ILE VAL GLU ARG SEQRES 6 A 219 VAL HIS LEU PRO PHE MET GLN GLU LEU GLU ARG THR SER SEQRES 7 A 219 THR ASP GLN ARG ASP THR PRO VAL HIS ASP LEU ARG ALA SEQRES 8 A 219 VAL MET ILE HIS SER PHE ILE GLU LEU SER GLU ASP GLU SEQRES 9 A 219 ARG LEU ARG LYS THR MET GLU ILE MET LEU ARG SER ASP SEQRES 10 A 219 ALA SER ALA ASN THR ARG VAL LEU THR GLU MET GLN GLN SEQRES 11 A 219 ALA GLY PHE ARG ASP ALA LEU ASP ARG MET GLU ARG ALA SEQRES 12 A 219 LEU ARG ARG ALA ARG ASP LEU GLY GLN LEU ARG GLU GLY SEQRES 13 A 219 ALA ASP PRO LYS ILE ALA ALA ARG MET LEU HIS ALA THR SEQRES 14 A 219 VAL LEU GLY VAL LEU HIS GLY ALA MET VAL GLU PRO GLU SEQRES 15 A 219 LEU MET ASP LEU LYS ARG ASP GLY MET LEU ALA LEU ASP SEQRES 16 A 219 MET THR LEU ALA ALA TYR VAL LYS ASP GLY VAL PHE VAL SEQRES 17 A 219 PRO GLY THR VAL PRO GLU PRO LEU PRO GLU ALA SEQRES 1 B 219 MET ALA ARG LYS THR LYS GLU ASP THR GLN ALA THR ARG SEQRES 2 B 219 GLU GLY ILE LEU ASP ALA ALA GLU ALA CYS PHE HIS GLU SEQRES 3 B 219 HIS GLY VAL ALA ARG THR THR LEU GLU MET ILE GLY ALA SEQRES 4 B 219 ARG ALA GLY TYR THR ARG GLY ALA VAL TYR TRP HIS PHE SEQRES 5 B 219 LYS ASN LYS SER GLU VAL LEU ALA ALA ILE VAL GLU ARG SEQRES 6 B 219 VAL HIS LEU PRO PHE MET GLN GLU LEU GLU ARG THR SER SEQRES 7 B 219 THR ASP GLN ARG ASP THR PRO VAL HIS ASP LEU ARG ALA SEQRES 8 B 219 VAL MET ILE HIS SER PHE ILE GLU LEU SER GLU ASP GLU SEQRES 9 B 219 ARG LEU ARG LYS THR MET GLU ILE MET LEU ARG SER ASP SEQRES 10 B 219 ALA SER ALA ASN THR ARG VAL LEU THR GLU MET GLN GLN SEQRES 11 B 219 ALA GLY PHE ARG ASP ALA LEU ASP ARG MET GLU ARG ALA SEQRES 12 B 219 LEU ARG ARG ALA ARG ASP LEU GLY GLN LEU ARG GLU GLY SEQRES 13 B 219 ALA ASP PRO LYS ILE ALA ALA ARG MET LEU HIS ALA THR SEQRES 14 B 219 VAL LEU GLY VAL LEU HIS GLY ALA MET VAL GLU PRO GLU SEQRES 15 B 219 LEU MET ASP LEU LYS ARG ASP GLY MET LEU ALA LEU ASP SEQRES 16 B 219 MET THR LEU ALA ALA TYR VAL LYS ASP GLY VAL PHE VAL SEQRES 17 B 219 PRO GLY THR VAL PRO GLU PRO LEU PRO GLU ALA HET SO4 A 220 5 HET TCL A 221 17 HET TCL A 222 17 HET SO4 B 220 5 HETNAM SO4 SULFATE ION HETNAM TCL TRICLOSAN FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 TCL 2(C12 H7 CL3 O2) FORMUL 7 HOH *225(H2 O) HELIX 1 1 GLU A 7 ALA A 11 5 5 HELIX 2 2 THR A 12 GLY A 28 1 17 HELIX 3 3 THR A 33 GLY A 42 1 10 HELIX 4 4 THR A 44 TRP A 50 1 7 HELIX 5 5 ASN A 54 THR A 77 1 24 HELIX 6 6 THR A 84 ASP A 103 1 20 HELIX 7 7 ASP A 103 SER A 116 1 14 HELIX 8 8 ARG A 123 LEU A 150 1 28 HELIX 9 9 ASP A 158 GLU A 180 1 23 HELIX 10 10 ASP A 185 VAL A 202 1 18 HELIX 11 11 GLN B 10 THR B 32 1 23 HELIX 12 12 THR B 33 GLY B 42 1 10 HELIX 13 13 THR B 44 TRP B 50 1 7 HELIX 14 14 ASN B 54 THR B 77 1 24 HELIX 15 15 THR B 84 ASP B 103 1 20 HELIX 16 16 ASP B 103 ARG B 115 1 13 HELIX 17 17 ARG B 123 LEU B 150 1 28 HELIX 18 18 ASP B 158 GLU B 180 1 23 HELIX 19 19 ASP B 185 VAL B 202 1 18 SITE 1 AC1 4 ARG A 154 GLU A 155 LYS A 203 HOH A 327 SITE 1 AC2 12 HIS A 67 PHE A 70 MET A 93 MET A 110 SITE 2 AC2 12 MET A 113 LEU A 114 GLY A 132 ALA A 136 SITE 3 AC2 12 MET A 140 HIS A 167 VAL A 170 TCL A 222 SITE 1 AC3 7 VAL A 66 HIS A 67 PHE A 70 MET A 110 SITE 2 AC3 7 MET A 113 TCL A 221 HOH A 318 SITE 1 AC4 3 ARG B 154 GLU B 155 LYS B 203 CRYST1 56.216 59.310 84.583 90.00 102.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017789 0.000000 0.004087 0.00000 SCALE2 0.000000 0.016860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012131 0.00000