data_3PA0 # _entry.id 3PA0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PA0 pdb_00003pa0 10.2210/pdb3pa0/pdb NDB NA0864 ? ? RCSB RCSB062143 ? ? WWPDB D_1000062143 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PA0 _pdbx_database_status.recvd_initial_deposition_date 2010-10-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yeh, J.I.' 1 'Shivachev, B.' 2 'Du, S.' 3 # _citation.id primary _citation.title ;Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 132 _citation.page_first 10717 _citation.page_last 10727 _citation.year 2010 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20681704 _citation.pdbx_database_id_DOI 10.1021/ja907225d # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yeh, J.I.' 1 ? primary 'Shivachev, B.' 2 ? primary 'Rapireddy, S.' 3 ? primary 'Crawford, M.J.' 4 ? primary 'Gil, R.R.' 5 ? primary 'Du, S.' 6 ? primary 'Madrid, M.' 7 ? primary 'Ly, D.H.' 8 ? # _cell.entry_id 3PA0 _cell.length_a 48.190 _cell.length_b 52.570 _cell.length_c 61.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PA0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3' ; 3051.001 2 ? ? ? ? 2 polymer syn 'PEPTIDE NUCLEIC ACID' 2928.065 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 189 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DT)(DC)(DT)(DG)(DT)(DG)(DG)(DT)(DC)' ATCTGTGGTC A,B ? 2 polydeoxyribonucleotide no yes 'K(40T)(40A)(40G)(40A)(40C)(40A)(40C)(40C)(40A)(40G)' KXXXXXXXXXX C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DG n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DC n 2 1 LYS n 2 2 40T n 2 3 40A n 2 4 40G n 2 5 40A n 2 6 40C n 2 7 40A n 2 8 40C n 2 9 40C n 2 10 40A n 2 11 40G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? 32630 ? 2 1 sample ? ? ? ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3PA0 3PA0 1 ? ATCTGTGGTC ? 2 PDB 3PA0 3PA0 2 ? 'K(40T)(40A)(40G)(40A)(40C)(40A)(40C)(40C)(40A)(40G)' ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PA0 A 1 ? 10 ? 3PA0 1 ? 10 ? 1 10 2 1 3PA0 B 1 ? 10 ? 3PA0 1 ? 10 ? 1 10 3 2 3PA0 C 1 ? 11 ? 3PA0 1 ? 11 ? 1 11 4 2 3PA0 D 1 ? 11 ? 3PA0 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 40A peptide-like . 'N-[(2S)-2-aminopropyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine' ? 'C12 H17 N7 O3' 307.308 40C peptide-like . 'N-[(4-amino-2-oxopyrimidin-1(2H)-yl)acetyl]-N-[(2S)-2-aminopropyl]glycine' ? 'C11 H17 N5 O4' 283.284 40G peptide-like . 'N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]-N-[(2S)-2-aminopropyl]glycine' ? 'C12 H17 N7 O4' 323.308 40T peptide-like . 'N-[(2S)-2-aminopropyl]-N-[(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]glycine' ? 'C12 H18 N4 O5' 298.295 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3PA0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_percent_sol 62.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;sample of 5mg/mL at 50 mM Tris pH7.5, 0.1 mM ZnSO4; well solution 20% w/v PEG-8000, 0.1 M Tris pH 8.5 and 0.2 M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 93 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-12-07 _diffrn_detector.details 'Si(111) monochromator' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si(111)' MAD x-ray 2 1 M 'Si(111)' 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.27196 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.27196 # _reflns.entry_id 3PA0 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.72 _reflns.d_resolution_high 1.6 _reflns.number_obs 19186 _reflns.number_all 19186 _reflns.percent_possible_obs 91.2 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 64 _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3PA0 _refine.ls_number_reflns_obs 19141 _refine.ls_number_reflns_all 19721 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2022 _refine.ls_R_factor_all 0.2179 _refine.ls_R_factor_R_work 0.2009 _refine.ls_R_factor_R_free 0.2287 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 958 _refine.ls_number_parameters 4147 _refine.ls_number_restraints 3771 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3PA0 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 1031.83 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 418 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 1033 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.078 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0185 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.074 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.075 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3PA0 _pdbx_refine.R_factor_all_no_cutoff 0.2183 _pdbx_refine.R_factor_obs_no_cutoff 0.2166 _pdbx_refine.free_R_factor_no_cutoff 0.2437 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 958 _pdbx_refine.R_factor_all_4sig_cutoff 0.2026 _pdbx_refine.R_factor_obs_4sig_cutoff 0.2009 _pdbx_refine.free_R_factor_4sig_cutoff 0.2278 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 761 _pdbx_refine.number_reflns_obs_4sig_cutoff 15099 # _struct.entry_id 3PA0 _struct.title ;Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PA0 _struct_keywords.pdbx_keywords 'PEPTIDE NUCLEIC ACID/DNA' _struct_keywords.text 'GAMMA-PNA, DNA, PEPTIDE NUCLEIC ACID-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C LYS 1 N ? ? ? 1_555 C 40T 2 C ? ? C LYS 1 C 40T 2 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? C 40T 2 N ? ? ? 1_555 C 40A 3 C ? ? C 40T 2 C 40A 3 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? C 40A 3 N ? ? ? 1_555 C 40G 4 C ? ? C 40A 3 C 40G 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? C 40G 4 N ? ? ? 1_555 C 40A 5 C ? ? C 40G 4 C 40A 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? C 40A 5 N ? ? ? 1_555 C 40C 6 C ? ? C 40A 5 C 40C 6 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale6 covale both ? C 40C 6 N ? ? ? 1_555 C 40A 7 C ? ? C 40C 6 C 40A 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale7 covale both ? C 40A 7 N ? ? ? 1_555 C 40C 8 C ? ? C 40A 7 C 40C 8 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale8 covale both ? C 40C 8 N ? ? ? 1_555 C 40C 9 C ? ? C 40C 8 C 40C 9 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale9 covale both ? C 40C 9 N ? ? ? 1_555 C 40A 10 C ? ? C 40C 9 C 40A 10 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? C 40A 10 N ? ? ? 1_555 C 40G 11 C ? ? C 40A 10 C 40G 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale11 covale both ? D LYS 1 N ? ? ? 1_555 D 40T 2 C ? ? D LYS 1 D 40T 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? D 40T 2 N ? ? ? 1_555 D 40A 3 C ? ? D 40T 2 D 40A 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? D 40A 3 N ? ? ? 1_555 D 40G 4 C ? ? D 40A 3 D 40G 4 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale14 covale both ? D 40G 4 N ? ? ? 1_555 D 40A 5 C ? ? D 40G 4 D 40A 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale15 covale both ? D 40A 5 N ? ? ? 1_555 D 40C 6 C ? ? D 40A 5 D 40C 6 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale16 covale both ? D 40C 6 N ? ? ? 1_555 D 40A 7 C ? ? D 40C 6 D 40A 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale17 covale both ? D 40A 7 N ? ? ? 1_555 D 40C 8 C ? ? D 40A 7 D 40C 8 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale18 covale both ? D 40C 8 N ? ? ? 1_555 D 40C 9 C ? ? D 40C 8 D 40C 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? D 40C 9 N ? ? ? 1_555 D 40A 10 C ? ? D 40C 9 D 40A 10 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale20 covale both ? D 40A 10 N ? ? ? 1_555 D 40G 11 C ? ? D 40A 10 D 40G 11 1_555 ? ? ? ? ? ? ? 1.426 ? ? metalc1 metalc ? ? A DG 5 OP1 ? ? ? 1_555 H ZN . ZN ? ? A DG 5 D ZN 12 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc2 metalc ? ? L HOH . O ? ? ? 1_555 H ZN . ZN ? ? A HOH 12 D ZN 12 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc3 metalc ? ? B DT 6 OP1 ? ? ? 1_555 F ZN . ZN ? ? B DT 6 C ZN 12 1_555 ? ? ? ? ? ? ? 1.926 ? ? metalc4 metalc ? ? M HOH . O ? ? ? 1_555 F ZN . ZN ? ? B HOH 12 C ZN 12 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc5 metalc ? ? M HOH . O ? ? ? 1_555 F ZN . ZN ? ? B HOH 14 C ZN 12 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc6 metalc ? ? C 40G 4 N7 ? ? ? 1_555 F ZN . ZN ? ? C 40G 4 C ZN 12 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 N HOH . O ? ? C ZN 12 C HOH 14 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 N HOH . O ? ? C ZN 12 C HOH 15 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc9 metalc ? ? D 40G 4 N7 ? ? ? 1_555 H ZN . ZN ? ? D 40G 4 D ZN 12 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc10 metalc ? ? H ZN . ZN ? ? ? 1_555 O HOH . O ? ? D ZN 12 D HOH 16 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc11 metalc ? ? H ZN . ZN ? ? ? 1_555 O HOH . O ? ? D ZN 12 D HOH 17 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc12 metalc ? ? H ZN . ZN ? ? ? 1_555 O HOH . O ? ? D ZN 12 D HOH 18 1_555 ? ? ? ? ? ? ? 2.151 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 11 ? 9 'BINDING SITE FOR RESIDUE EDO A 11' AC2 Software C ZN 12 ? 6 'BINDING SITE FOR RESIDUE ZN C 12' AC3 Software C EDO 13 ? 5 'BINDING SITE FOR RESIDUE EDO C 13' AC4 Software D ZN 12 ? 6 'BINDING SITE FOR RESIDUE ZN D 12' AC5 Software D EDO 13 ? 6 'BINDING SITE FOR RESIDUE EDO D 13' AC6 Software D EDO 14 ? 2 'BINDING SITE FOR RESIDUE EDO D 14' AC7 Software D EDO 15 ? 9 'BINDING SITE FOR RESIDUE EDO D 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DT A 6 ? DT A 6 . ? 1_555 ? 2 AC1 9 DG A 7 ? DG A 7 . ? 1_555 ? 3 AC1 9 40A C 5 ? 40A C 5 . ? 4_566 ? 4 AC1 9 40C C 6 ? 40C C 6 . ? 4_566 ? 5 AC1 9 HOH N . ? HOH C 1005 . ? 4_566 ? 6 AC1 9 HOH N . ? HOH C 1123 . ? 4_566 ? 7 AC1 9 40C D 8 ? 40C D 8 . ? 1_555 ? 8 AC1 9 40C D 9 ? 40C D 9 . ? 1_555 ? 9 AC1 9 EDO I . ? EDO D 13 . ? 1_555 ? 10 AC2 6 DT B 6 ? DT B 6 . ? 1_555 ? 11 AC2 6 HOH M . ? HOH B 12 . ? 1_555 ? 12 AC2 6 HOH M . ? HOH B 14 . ? 1_555 ? 13 AC2 6 40G C 4 ? 40G C 4 . ? 1_555 ? 14 AC2 6 HOH N . ? HOH C 14 . ? 1_555 ? 15 AC2 6 HOH N . ? HOH C 15 . ? 1_555 ? 16 AC3 5 40C C 8 ? 40C C 8 . ? 1_555 ? 17 AC3 5 HOH N . ? HOH C 16 . ? 1_555 ? 18 AC3 5 HOH N . ? HOH C 1016 . ? 1_555 ? 19 AC3 5 HOH N . ? HOH C 1070 . ? 1_555 ? 20 AC3 5 40C D 6 ? 40C D 6 . ? 1_555 ? 21 AC4 6 DG A 5 ? DG A 5 . ? 1_555 ? 22 AC4 6 HOH L . ? HOH A 12 . ? 1_555 ? 23 AC4 6 40G D 4 ? 40G D 4 . ? 1_555 ? 24 AC4 6 HOH O . ? HOH D 16 . ? 1_555 ? 25 AC4 6 HOH O . ? HOH D 17 . ? 1_555 ? 26 AC4 6 HOH O . ? HOH D 18 . ? 1_555 ? 27 AC5 6 EDO E . ? EDO A 11 . ? 1_555 ? 28 AC5 6 40C C 6 ? 40C C 6 . ? 4_566 ? 29 AC5 6 HOH N . ? HOH C 1131 . ? 4_566 ? 30 AC5 6 HOH N . ? HOH C 1209 . ? 4_566 ? 31 AC5 6 40C D 8 ? 40C D 8 . ? 1_555 ? 32 AC5 6 40C D 9 ? 40C D 9 . ? 1_555 ? 33 AC6 2 40T D 2 ? 40T D 2 . ? 1_555 ? 34 AC6 2 40A D 3 ? 40A D 3 . ? 1_555 ? 35 AC7 9 HOH M . ? HOH B 1049 . ? 4_466 ? 36 AC7 9 40A C 5 ? 40A C 5 . ? 1_555 ? 37 AC7 9 HOH N . ? HOH C 1123 . ? 1_555 ? 38 AC7 9 40A D 3 ? 40A D 3 . ? 1_555 ? 39 AC7 9 40G D 4 ? 40G D 4 . ? 1_555 ? 40 AC7 9 40C D 8 ? 40C D 8 . ? 4_466 ? 41 AC7 9 HOH O . ? HOH D 1053 . ? 1_555 ? 42 AC7 9 HOH O . ? HOH D 1093 . ? 1_555 ? 43 AC7 9 HOH O . ? HOH D 1127 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PA0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3PA0 _atom_sites.fract_transf_matrix[1][1] 0.020751 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019022 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016353 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DC 10 10 10 DC DC A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DT 6 6 6 DT DT B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DC 10 10 10 DC DC B . n C 2 1 LYS 1 1 1 LYS LYS C . n C 2 2 40T 2 2 2 40T 40T C . n C 2 3 40A 3 3 3 40A 40A C . n C 2 4 40G 4 4 4 40G 40G C . n C 2 5 40A 5 5 5 40A 40A C . n C 2 6 40C 6 6 6 40C 40C C . n C 2 7 40A 7 7 7 40A 40A C . n C 2 8 40C 8 8 8 40C 40C C . n C 2 9 40C 9 9 9 40C 40C C . n C 2 10 40A 10 10 10 40A 40A C . n C 2 11 40G 11 11 11 40G 40G C . n D 2 1 LYS 1 1 1 LYS LYS D . n D 2 2 40T 2 2 2 40T 40T D . n D 2 3 40A 3 3 3 40A 40A D . n D 2 4 40G 4 4 4 40G 40G D . n D 2 5 40A 5 5 5 40A 40A D . n D 2 6 40C 6 6 6 40C 40C D . n D 2 7 40A 7 7 7 40A 40A D . n D 2 8 40C 8 8 8 40C 40C D . n D 2 9 40C 9 9 9 40C 40C D . n D 2 10 40A 10 10 10 40A 40A D . n D 2 11 40G 11 11 11 40G 40G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO 1 11 11 EDO EDO A . F 4 ZN 1 12 12 ZN ZN C . G 3 EDO 1 13 13 EDO EDO C . H 4 ZN 1 12 12 ZN ZN D . I 3 EDO 1 13 13 EDO EDO D . J 3 EDO 1 14 14 EDO EDO D . K 3 EDO 1 15 15 EDO EDO D . L 5 HOH 1 12 12 HOH HOH A . L 5 HOH 2 13 13 HOH HOH A . L 5 HOH 3 14 14 HOH HOH A . L 5 HOH 4 15 15 HOH HOH A . L 5 HOH 5 1028 1028 HOH HOH A . L 5 HOH 6 1031 1031 HOH HOH A . L 5 HOH 7 1035 1035 HOH HOH A . L 5 HOH 8 1043 1043 HOH HOH A . L 5 HOH 9 1048 1048 HOH HOH A . L 5 HOH 10 1052 1052 HOH HOH A . L 5 HOH 11 1058 1058 HOH HOH A . L 5 HOH 12 1065 1065 HOH HOH A . L 5 HOH 13 1079 1079 HOH HOH A . L 5 HOH 14 1082 1082 HOH HOH A . L 5 HOH 15 1083 1083 HOH HOH A . L 5 HOH 16 1090 1090 HOH HOH A . L 5 HOH 17 1091 1091 HOH HOH A . L 5 HOH 18 1095 1095 HOH HOH A . L 5 HOH 19 1098 1098 HOH HOH A . L 5 HOH 20 1099 1099 HOH HOH A . L 5 HOH 21 1103 1103 HOH HOH A . L 5 HOH 22 1104 1104 HOH HOH A . L 5 HOH 23 1109 1109 HOH HOH A . L 5 HOH 24 1110 1110 HOH HOH A . L 5 HOH 25 1115 1115 HOH HOH A . L 5 HOH 26 1117 1117 HOH HOH A . L 5 HOH 27 1128 1128 HOH HOH A . L 5 HOH 28 1129 1129 HOH HOH A . L 5 HOH 29 1137 1137 HOH HOH A . L 5 HOH 30 1145 1145 HOH HOH A . L 5 HOH 31 1146 1146 HOH HOH A . L 5 HOH 32 1152 1152 HOH HOH A . L 5 HOH 33 1156 1156 HOH HOH A . L 5 HOH 34 1157 1157 HOH HOH A . L 5 HOH 35 1165 1165 HOH HOH A . L 5 HOH 36 1180 1180 HOH HOH A . L 5 HOH 37 1181 1181 HOH HOH A . L 5 HOH 38 1183 1183 HOH HOH A . L 5 HOH 39 1187 1187 HOH HOH A . L 5 HOH 40 1188 1188 HOH HOH A . L 5 HOH 41 1194 1194 HOH HOH A . L 5 HOH 42 1198 1198 HOH HOH A . L 5 HOH 43 1204 1204 HOH HOH A . M 5 HOH 1 11 11 HOH HOH B . M 5 HOH 2 12 12 HOH HOH B . M 5 HOH 3 13 13 HOH HOH B . M 5 HOH 4 14 14 HOH HOH B . M 5 HOH 5 15 15 HOH HOH B . M 5 HOH 6 1027 1027 HOH HOH B . M 5 HOH 7 1034 1034 HOH HOH B . M 5 HOH 8 1038 1038 HOH HOH B . M 5 HOH 9 1045 1045 HOH HOH B . M 5 HOH 10 1047 1047 HOH HOH B . M 5 HOH 11 1049 1049 HOH HOH B . M 5 HOH 12 1050 1050 HOH HOH B . M 5 HOH 13 1054 1054 HOH HOH B . M 5 HOH 14 1059 1059 HOH HOH B . M 5 HOH 15 1061 1061 HOH HOH B . M 5 HOH 16 1063 1063 HOH HOH B . M 5 HOH 17 1064 1064 HOH HOH B . M 5 HOH 18 1072 1072 HOH HOH B . M 5 HOH 19 1086 1086 HOH HOH B . M 5 HOH 20 1092 1092 HOH HOH B . M 5 HOH 21 1097 1097 HOH HOH B . M 5 HOH 22 1102 1102 HOH HOH B . M 5 HOH 23 1105 1105 HOH HOH B . M 5 HOH 24 1106 1106 HOH HOH B . M 5 HOH 25 1119 1119 HOH HOH B . M 5 HOH 26 1120 1120 HOH HOH B . M 5 HOH 27 1126 1126 HOH HOH B . M 5 HOH 28 1140 1140 HOH HOH B . M 5 HOH 29 1142 1142 HOH HOH B . M 5 HOH 30 1147 1147 HOH HOH B . M 5 HOH 31 1153 1153 HOH HOH B . M 5 HOH 32 1158 1158 HOH HOH B . M 5 HOH 33 1159 1159 HOH HOH B . M 5 HOH 34 1162 1162 HOH HOH B . M 5 HOH 35 1175 1175 HOH HOH B . M 5 HOH 36 1178 1178 HOH HOH B . M 5 HOH 37 1179 1179 HOH HOH B . M 5 HOH 38 1186 1186 HOH HOH B . M 5 HOH 39 1190 1190 HOH HOH B . M 5 HOH 40 1191 1191 HOH HOH B . M 5 HOH 41 1200 1200 HOH HOH B . M 5 HOH 42 1201 1201 HOH HOH B . M 5 HOH 43 1203 1203 HOH HOH B . M 5 HOH 44 1207 1207 HOH HOH B . M 5 HOH 45 1210 1210 HOH HOH B . N 5 HOH 1 14 14 HOH HOH C . N 5 HOH 2 15 15 HOH HOH C . N 5 HOH 3 16 16 HOH HOH C . N 5 HOH 4 1001 1001 HOH HOH C . N 5 HOH 5 1002 1002 HOH HOH C . N 5 HOH 6 1003 1003 HOH HOH C . N 5 HOH 7 1004 1004 HOH HOH C . N 5 HOH 8 1005 1005 HOH HOH C . N 5 HOH 9 1006 1006 HOH HOH C . N 5 HOH 10 1007 1007 HOH HOH C . N 5 HOH 11 1008 1008 HOH HOH C . N 5 HOH 12 1009 1009 HOH HOH C . N 5 HOH 13 1010 1010 HOH HOH C . N 5 HOH 14 1012 1012 HOH HOH C . N 5 HOH 15 1016 1016 HOH HOH C . N 5 HOH 16 1022 1022 HOH HOH C . N 5 HOH 17 1024 1024 HOH HOH C . N 5 HOH 18 1025 1025 HOH HOH C . N 5 HOH 19 1032 1032 HOH HOH C . N 5 HOH 20 1033 1033 HOH HOH C . N 5 HOH 21 1036 1036 HOH HOH C . N 5 HOH 22 1040 1040 HOH HOH C . N 5 HOH 23 1042 1042 HOH HOH C . N 5 HOH 24 1046 1046 HOH HOH C . N 5 HOH 25 1051 1051 HOH HOH C . N 5 HOH 26 1056 1056 HOH HOH C . N 5 HOH 27 1067 1067 HOH HOH C . N 5 HOH 28 1069 1069 HOH HOH C . N 5 HOH 29 1070 1070 HOH HOH C . N 5 HOH 30 1071 1071 HOH HOH C . N 5 HOH 31 1073 1073 HOH HOH C . N 5 HOH 32 1078 1078 HOH HOH C . N 5 HOH 33 1080 1080 HOH HOH C . N 5 HOH 34 1088 1088 HOH HOH C . N 5 HOH 35 1101 1101 HOH HOH C . N 5 HOH 36 1118 1118 HOH HOH C . N 5 HOH 37 1123 1123 HOH HOH C . N 5 HOH 38 1124 1124 HOH HOH C . N 5 HOH 39 1131 1131 HOH HOH C . N 5 HOH 40 1132 1132 HOH HOH C . N 5 HOH 41 1134 1134 HOH HOH C . N 5 HOH 42 1135 1135 HOH HOH C . N 5 HOH 43 1136 1136 HOH HOH C . N 5 HOH 44 1138 1138 HOH HOH C . N 5 HOH 45 1139 1139 HOH HOH C . N 5 HOH 46 1141 1141 HOH HOH C . N 5 HOH 47 1143 1143 HOH HOH C . N 5 HOH 48 1144 1144 HOH HOH C . N 5 HOH 49 1148 1148 HOH HOH C . N 5 HOH 50 1149 1149 HOH HOH C . N 5 HOH 51 1155 1155 HOH HOH C . N 5 HOH 52 1163 1163 HOH HOH C . N 5 HOH 53 1164 1164 HOH HOH C . N 5 HOH 54 1168 1168 HOH HOH C . N 5 HOH 55 1189 1189 HOH HOH C . N 5 HOH 56 1208 1208 HOH HOH C . N 5 HOH 57 1209 1209 HOH HOH C . O 5 HOH 1 16 16 HOH HOH D . O 5 HOH 2 17 17 HOH HOH D . O 5 HOH 3 18 18 HOH HOH D . O 5 HOH 4 19 19 HOH HOH D . O 5 HOH 5 20 20 HOH HOH D . O 5 HOH 6 21 21 HOH HOH D . O 5 HOH 7 22 22 HOH HOH D . O 5 HOH 8 1011 1011 HOH HOH D . O 5 HOH 9 1013 1013 HOH HOH D . O 5 HOH 10 1015 1015 HOH HOH D . O 5 HOH 11 1017 1017 HOH HOH D . O 5 HOH 12 1018 1018 HOH HOH D . O 5 HOH 13 1019 1019 HOH HOH D . O 5 HOH 14 1020 1020 HOH HOH D . O 5 HOH 15 1021 1021 HOH HOH D . O 5 HOH 16 1023 1023 HOH HOH D . O 5 HOH 17 1026 1026 HOH HOH D . O 5 HOH 18 1053 1053 HOH HOH D . O 5 HOH 19 1055 1055 HOH HOH D . O 5 HOH 20 1057 1057 HOH HOH D . O 5 HOH 21 1060 1060 HOH HOH D . O 5 HOH 22 1062 1062 HOH HOH D . O 5 HOH 23 1066 1066 HOH HOH D . O 5 HOH 24 1068 1068 HOH HOH D . O 5 HOH 25 1075 1075 HOH HOH D . O 5 HOH 26 1077 1077 HOH HOH D . O 5 HOH 27 1084 1084 HOH HOH D . O 5 HOH 28 1087 1087 HOH HOH D . O 5 HOH 29 1093 1093 HOH HOH D . O 5 HOH 30 1094 1094 HOH HOH D . O 5 HOH 31 1100 1100 HOH HOH D . O 5 HOH 32 1111 1111 HOH HOH D . O 5 HOH 33 1113 1113 HOH HOH D . O 5 HOH 34 1114 1114 HOH HOH D . O 5 HOH 35 1116 1116 HOH HOH D . O 5 HOH 36 1121 1121 HOH HOH D . O 5 HOH 37 1122 1122 HOH HOH D . O 5 HOH 38 1127 1127 HOH HOH D . O 5 HOH 39 1130 1130 HOH HOH D . O 5 HOH 40 1150 1150 HOH HOH D . O 5 HOH 41 1167 1167 HOH HOH D . O 5 HOH 42 1182 1182 HOH HOH D . O 5 HOH 43 1196 1196 HOH HOH D . P 5 HOH 1 1206 1206 HOH HOH G . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 C,F,G,N 1 2 A,E,L 2 1 B,D,H,I,J,K,M,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 960 ? 1 MORE 1 ? 1 'SSA (A^2)' 4040 ? 2 'ABSA (A^2)' 980 ? 2 MORE 1 ? 2 'SSA (A^2)' 4030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_466 x-1/2,-y+3/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -24.0950000000 0.0000000000 -1.0000000000 0.0000000000 78.8550000000 0.0000000000 0.0000000000 -1.0000000000 61.1500000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 5 ? A DG 5 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? L HOH . ? A HOH 12 ? 1_555 94.3 ? 2 OP1 ? A DG 5 ? A DG 5 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 N7 ? D 40G 4 ? D 40G 4 ? 1_555 90.8 ? 3 O ? L HOH . ? A HOH 12 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 N7 ? D 40G 4 ? D 40G 4 ? 1_555 172.3 ? 4 OP1 ? A DG 5 ? A DG 5 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 16 ? 1_555 90.5 ? 5 O ? L HOH . ? A HOH 12 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 16 ? 1_555 84.8 ? 6 N7 ? D 40G 4 ? D 40G 4 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 16 ? 1_555 89.3 ? 7 OP1 ? A DG 5 ? A DG 5 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 17 ? 1_555 95.7 ? 8 O ? L HOH . ? A HOH 12 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 17 ? 1_555 88.3 ? 9 N7 ? D 40G 4 ? D 40G 4 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 17 ? 1_555 97.0 ? 10 O ? O HOH . ? D HOH 16 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 17 ? 1_555 171.0 ? 11 OP1 ? A DG 5 ? A DG 5 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 18 ? 1_555 176.8 ? 12 O ? L HOH . ? A HOH 12 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 18 ? 1_555 83.4 ? 13 N7 ? D 40G 4 ? D 40G 4 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 18 ? 1_555 91.3 ? 14 O ? O HOH . ? D HOH 16 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 18 ? 1_555 87.1 ? 15 O ? O HOH . ? D HOH 17 ? 1_555 ZN ? H ZN . ? D ZN 12 ? 1_555 O ? O HOH . ? D HOH 18 ? 1_555 86.4 ? 16 OP1 ? B DT 6 ? B DT 6 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? M HOH . ? B HOH 12 ? 1_555 89.4 ? 17 OP1 ? B DT 6 ? B DT 6 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? M HOH . ? B HOH 14 ? 1_555 94.7 ? 18 O ? M HOH . ? B HOH 12 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? M HOH . ? B HOH 14 ? 1_555 88.2 ? 19 OP1 ? B DT 6 ? B DT 6 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 N7 ? C 40G 4 ? C 40G 4 ? 1_555 88.9 ? 20 O ? M HOH . ? B HOH 12 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 N7 ? C 40G 4 ? C 40G 4 ? 1_555 93.5 ? 21 O ? M HOH . ? B HOH 14 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 N7 ? C 40G 4 ? C 40G 4 ? 1_555 176.0 ? 22 OP1 ? B DT 6 ? B DT 6 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 14 ? 1_555 96.6 ? 23 O ? M HOH . ? B HOH 12 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 14 ? 1_555 173.2 ? 24 O ? M HOH . ? B HOH 14 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 14 ? 1_555 88.1 ? 25 N7 ? C 40G 4 ? C 40G 4 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 14 ? 1_555 89.8 ? 26 OP1 ? B DT 6 ? B DT 6 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 15 ? 1_555 173.6 ? 27 O ? M HOH . ? B HOH 12 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 15 ? 1_555 85.7 ? 28 O ? M HOH . ? B HOH 14 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 15 ? 1_555 81.1 ? 29 N7 ? C 40G 4 ? C 40G 4 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 15 ? 1_555 95.4 ? 30 O ? N HOH . ? C HOH 14 ? 1_555 ZN ? F ZN . ? C ZN 12 ? 1_555 O ? N HOH . ? C HOH 15 ? 1_555 88.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.value' 22 3 'Structure model' '_struct_conn.conn_type_id' 23 3 'Structure model' '_struct_conn.id' 24 3 'Structure model' '_struct_conn.pdbx_dist_value' 25 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 3 'Structure model' '_struct_conn_type.id' 41 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELX 'model building' . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 SHELX phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 15 ? ? O A HOH 1110 ? ? 1.86 2 1 O A HOH 1058 ? ? O A HOH 1188 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 1098 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1047 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_566 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.44 108.30 5.14 0.30 N 2 1 N1 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.20 123.10 -4.90 0.80 N 3 1 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 126.66 122.30 4.36 0.60 N 4 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 112.59 108.30 4.29 0.30 N 5 1 N1 B DG 5 ? ? C6 B DG 5 ? ? O6 B DG 5 ? ? 115.62 119.90 -4.28 0.60 N 6 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.93 108.30 2.63 0.30 N 7 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 100.86 104.50 -3.64 0.40 N 8 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.23 108.30 1.93 0.30 N 9 1 N1 B DT 9 ? ? C2 B DT 9 ? ? O2 B DT 9 ? ? 117.82 123.10 -5.28 0.80 N 10 1 N3 B DT 9 ? ? C2 B DT 9 ? ? O2 B DT 9 ? ? 126.95 122.30 4.65 0.60 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 1 ? O ? C LYS 1 O 2 1 Y 1 C LYS 1 ? CG ? C LYS 1 CG 3 1 Y 1 C LYS 1 ? CD ? C LYS 1 CD 4 1 Y 1 C LYS 1 ? CE ? C LYS 1 CE 5 1 Y 1 C LYS 1 ? NZ ? C LYS 1 NZ 6 1 Y 1 D LYS 1 ? O ? D LYS 1 O 7 1 Y 1 D LYS 1 ? CG ? D LYS 1 CG 8 1 Y 1 D LYS 1 ? CD ? D LYS 1 CD 9 1 Y 1 D LYS 1 ? CE ? D LYS 1 CE 10 1 Y 1 D LYS 1 ? NZ ? D LYS 1 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 40A C C N N 1 40A N1 N Y N 2 40A C2 C Y N 3 40A N3 N Y N 4 40A C4 C Y N 5 40A C5 C Y N 6 40A C6 C Y N 7 40A N6 N N N 8 40A N7 N Y N 9 40A C8 C Y N 10 40A N9 N Y N 11 40A N N N N 12 40A O O N N 13 40A CA C N S 14 40A C2M C N N 15 40A "C3'" C N N 16 40A "N4'" N N N 17 40A "C5'" C N N 18 40A "C7'" C N N 19 40A "O7'" O N N 20 40A "C8'" C N N 21 40A H3 H N N 22 40A H8 H N N 23 40A H H N N 24 40A HA H N N 25 40A "H13'" H N N 26 40A "H23'" H N N 27 40A "H15'" H N N 28 40A "H25'" H N N 29 40A HN6 H N N 30 40A HN6A H N N 31 40A "H18'" H N N 32 40A "H28'" H N N 33 40A H2M H N N 34 40A H2MA H N N 35 40A H2MB H N N 36 40A OXT O N N 37 40A H2 H N N 38 40A HXT H N N 39 40C C C N N 40 40C N1 N N N 41 40C C2 C N N 42 40C O2 O N N 43 40C N3 N N N 44 40C C4 C N N 45 40C N4 N N N 46 40C C5 C N N 47 40C C6 C N N 48 40C N N N N 49 40C O O N N 50 40C CA C N S 51 40C C2M C N N 52 40C "C3'" C N N 53 40C "N4'" N N N 54 40C "C5'" C N N 55 40C "C7'" C N N 56 40C "O7'" O N N 57 40C "C8'" C N N 58 40C H5 H N N 59 40C H6 H N N 60 40C H H N N 61 40C HA H N N 62 40C "H13'" H N N 63 40C "H23'" H N N 64 40C HN4 H N N 65 40C HN4A H N N 66 40C "H15'" H N N 67 40C "H25'" H N N 68 40C "H18'" H N N 69 40C "H28'" H N N 70 40C H2M H N N 71 40C H2MA H N N 72 40C H2MB H N N 73 40C OXT O N N 74 40C H2 H N N 75 40C HXT H N N 76 40G C C N N 77 40G N1 N N N 78 40G C2 C N N 79 40G N2 N N N 80 40G N3 N N N 81 40G C4 C Y N 82 40G C5 C Y N 83 40G C6 C N N 84 40G O6 O N N 85 40G N7 N Y N 86 40G C8 C Y N 87 40G N9 N Y N 88 40G N N N N 89 40G O O N N 90 40G CA C N S 91 40G C2M C N N 92 40G "C3'" C N N 93 40G "N4'" N N N 94 40G "C5'" C N N 95 40G "C7'" C N N 96 40G "O7'" O N N 97 40G "C8'" C N N 98 40G HN1 H N N 99 40G H8 H N N 100 40G H H N N 101 40G HA H N N 102 40G HN2 H N N 103 40G HN2A H N N 104 40G "H13'" H N N 105 40G "H23'" H N N 106 40G "H15'" H N N 107 40G "H25'" H N N 108 40G "H18'" H N N 109 40G "H28'" H N N 110 40G H2M H N N 111 40G H2MA H N N 112 40G H2MB H N N 113 40G OXT O N N 114 40G H2 H N N 115 40G HXT H N N 116 40T C C N N 117 40T N1 N N N 118 40T C2 C N N 119 40T O2 O N N 120 40T N3 N N N 121 40T C4 C N N 122 40T O4 O N N 123 40T C5 C N N 124 40T C6 C N N 125 40T C7 C N N 126 40T N N N N 127 40T O O N N 128 40T CA C N S 129 40T C2M C N N 130 40T "C3'" C N N 131 40T "N4'" N N N 132 40T "C5'" C N N 133 40T "C7'" C N N 134 40T "O7'" O N N 135 40T "C8'" C N N 136 40T HN3 H N N 137 40T H6 H N N 138 40T H H N N 139 40T HA H N N 140 40T "H13'" H N N 141 40T "H23'" H N N 142 40T "H15'" H N N 143 40T "H25'" H N N 144 40T H7 H N N 145 40T H7A H N N 146 40T H7B H N N 147 40T "HXT'" H N N 148 40T "H28'" H N N 149 40T H2M H N N 150 40T H2MA H N N 151 40T H2MB H N N 152 40T OXT O N N 153 40T H2 H N N 154 40T HXT H N N 155 DA OP3 O N N 156 DA P P N N 157 DA OP1 O N N 158 DA OP2 O N N 159 DA "O5'" O N N 160 DA "C5'" C N N 161 DA "C4'" C N R 162 DA "O4'" O N N 163 DA "C3'" C N S 164 DA "O3'" O N N 165 DA "C2'" C N N 166 DA "C1'" C N R 167 DA N9 N Y N 168 DA C8 C Y N 169 DA N7 N Y N 170 DA C5 C Y N 171 DA C6 C Y N 172 DA N6 N N N 173 DA N1 N Y N 174 DA C2 C Y N 175 DA N3 N Y N 176 DA C4 C Y N 177 DA HOP3 H N N 178 DA HOP2 H N N 179 DA "H5'" H N N 180 DA "H5''" H N N 181 DA "H4'" H N N 182 DA "H3'" H N N 183 DA "HO3'" H N N 184 DA "H2'" H N N 185 DA "H2''" H N N 186 DA "H1'" H N N 187 DA H8 H N N 188 DA H61 H N N 189 DA H62 H N N 190 DA H2 H N N 191 DC OP3 O N N 192 DC P P N N 193 DC OP1 O N N 194 DC OP2 O N N 195 DC "O5'" O N N 196 DC "C5'" C N N 197 DC "C4'" C N R 198 DC "O4'" O N N 199 DC "C3'" C N S 200 DC "O3'" O N N 201 DC "C2'" C N N 202 DC "C1'" C N R 203 DC N1 N N N 204 DC C2 C N N 205 DC O2 O N N 206 DC N3 N N N 207 DC C4 C N N 208 DC N4 N N N 209 DC C5 C N N 210 DC C6 C N N 211 DC HOP3 H N N 212 DC HOP2 H N N 213 DC "H5'" H N N 214 DC "H5''" H N N 215 DC "H4'" H N N 216 DC "H3'" H N N 217 DC "HO3'" H N N 218 DC "H2'" H N N 219 DC "H2''" H N N 220 DC "H1'" H N N 221 DC H41 H N N 222 DC H42 H N N 223 DC H5 H N N 224 DC H6 H N N 225 DG OP3 O N N 226 DG P P N N 227 DG OP1 O N N 228 DG OP2 O N N 229 DG "O5'" O N N 230 DG "C5'" C N N 231 DG "C4'" C N R 232 DG "O4'" O N N 233 DG "C3'" C N S 234 DG "O3'" O N N 235 DG "C2'" C N N 236 DG "C1'" C N R 237 DG N9 N Y N 238 DG C8 C Y N 239 DG N7 N Y N 240 DG C5 C Y N 241 DG C6 C N N 242 DG O6 O N N 243 DG N1 N N N 244 DG C2 C N N 245 DG N2 N N N 246 DG N3 N N N 247 DG C4 C Y N 248 DG HOP3 H N N 249 DG HOP2 H N N 250 DG "H5'" H N N 251 DG "H5''" H N N 252 DG "H4'" H N N 253 DG "H3'" H N N 254 DG "HO3'" H N N 255 DG "H2'" H N N 256 DG "H2''" H N N 257 DG "H1'" H N N 258 DG H8 H N N 259 DG H1 H N N 260 DG H21 H N N 261 DG H22 H N N 262 DT OP3 O N N 263 DT P P N N 264 DT OP1 O N N 265 DT OP2 O N N 266 DT "O5'" O N N 267 DT "C5'" C N N 268 DT "C4'" C N R 269 DT "O4'" O N N 270 DT "C3'" C N S 271 DT "O3'" O N N 272 DT "C2'" C N N 273 DT "C1'" C N R 274 DT N1 N N N 275 DT C2 C N N 276 DT O2 O N N 277 DT N3 N N N 278 DT C4 C N N 279 DT O4 O N N 280 DT C5 C N N 281 DT C7 C N N 282 DT C6 C N N 283 DT HOP3 H N N 284 DT HOP2 H N N 285 DT "H5'" H N N 286 DT "H5''" H N N 287 DT "H4'" H N N 288 DT "H3'" H N N 289 DT "HO3'" H N N 290 DT "H2'" H N N 291 DT "H2''" H N N 292 DT "H1'" H N N 293 DT H3 H N N 294 DT H71 H N N 295 DT H72 H N N 296 DT H73 H N N 297 DT H6 H N N 298 EDO C1 C N N 299 EDO O1 O N N 300 EDO C2 C N N 301 EDO O2 O N N 302 EDO H11 H N N 303 EDO H12 H N N 304 EDO HO1 H N N 305 EDO H21 H N N 306 EDO H22 H N N 307 EDO HO2 H N N 308 HOH O O N N 309 HOH H1 H N N 310 HOH H2 H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 ZN ZN ZN N N 337 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 40A C O doub N N 1 40A C "C5'" sing N N 2 40A C OXT sing N N 3 40A N1 C2 doub Y N 4 40A N1 C6 sing Y N 5 40A C2 N3 sing Y N 6 40A N3 C4 doub Y N 7 40A C4 N9 sing Y N 8 40A C5 C4 sing Y N 9 40A C5 N7 sing Y N 10 40A C6 C5 doub Y N 11 40A N6 C6 sing N N 12 40A N6 HN6A sing N N 13 40A N7 C8 doub Y N 14 40A C8 H8 sing N N 15 40A N9 C8 sing Y N 16 40A N9 "C8'" sing N N 17 40A N H2 sing N N 18 40A CA N sing N N 19 40A CA HA sing N N 20 40A CA C2M sing N N 21 40A C2M H2MA sing N N 22 40A "C3'" CA sing N N 23 40A "N4'" "C3'" sing N N 24 40A "N4'" "C5'" sing N N 25 40A "C5'" "H15'" sing N N 26 40A "C5'" "H25'" sing N N 27 40A "C7'" "N4'" sing N N 28 40A "O7'" "C7'" doub N N 29 40A "C8'" "C7'" sing N N 30 40A "C8'" "H18'" sing N N 31 40A H3 C2 sing N N 32 40A H N sing N N 33 40A "H13'" "C3'" sing N N 34 40A "H23'" "C3'" sing N N 35 40A HN6 N6 sing N N 36 40A "H28'" "C8'" sing N N 37 40A H2M C2M sing N N 38 40A H2MB C2M sing N N 39 40A OXT HXT sing N N 40 40C C "C5'" sing N N 41 40C C O doub N N 42 40C C OXT sing N N 43 40C N1 "C8'" sing N N 44 40C C2 N1 sing N N 45 40C O2 C2 doub N N 46 40C N3 C2 sing N N 47 40C N3 C4 doub N N 48 40C C4 C5 sing N N 49 40C N4 C4 sing N N 50 40C C5 C6 doub N N 51 40C C6 N1 sing N N 52 40C C6 H6 sing N N 53 40C N CA sing N N 54 40C N H2 sing N N 55 40C CA C2M sing N N 56 40C CA HA sing N N 57 40C C2M H2MA sing N N 58 40C C2M H2M sing N N 59 40C "C3'" CA sing N N 60 40C "C3'" "H23'" sing N N 61 40C "N4'" "C3'" sing N N 62 40C "N4'" "C5'" sing N N 63 40C "C5'" "H25'" sing N N 64 40C "C7'" "N4'" sing N N 65 40C "O7'" "C7'" doub N N 66 40C "C8'" "C7'" sing N N 67 40C "C8'" "H18'" sing N N 68 40C H5 C5 sing N N 69 40C H N sing N N 70 40C "H13'" "C3'" sing N N 71 40C HN4 N4 sing N N 72 40C HN4A N4 sing N N 73 40C "H15'" "C5'" sing N N 74 40C "H28'" "C8'" sing N N 75 40C H2MB C2M sing N N 76 40C OXT HXT sing N N 77 40G C "C5'" sing N N 78 40G C O doub N N 79 40G C OXT sing N N 80 40G N1 C2 sing N N 81 40G C2 N3 doub N N 82 40G N2 C2 sing N N 83 40G N2 HN2 sing N N 84 40G C4 N3 sing N N 85 40G C4 N9 sing Y N 86 40G C5 C4 doub Y N 87 40G C5 N7 sing Y N 88 40G C6 N1 sing N N 89 40G C6 C5 sing N N 90 40G O6 C6 doub N N 91 40G N7 C8 doub Y N 92 40G C8 N9 sing Y N 93 40G C8 H8 sing N N 94 40G N9 "C8'" sing N N 95 40G N CA sing N N 96 40G N H2 sing N N 97 40G CA HA sing N N 98 40G CA C2M sing N N 99 40G C2M H2MA sing N N 100 40G C2M H2M sing N N 101 40G "C3'" CA sing N N 102 40G "C3'" "H23'" sing N N 103 40G "N4'" "C3'" sing N N 104 40G "N4'" "C5'" sing N N 105 40G "C5'" "H25'" sing N N 106 40G "C7'" "N4'" sing N N 107 40G "O7'" "C7'" doub N N 108 40G "C8'" "C7'" sing N N 109 40G "C8'" "H28'" sing N N 110 40G "C8'" "H18'" sing N N 111 40G HN1 N1 sing N N 112 40G H N sing N N 113 40G HN2A N2 sing N N 114 40G "H13'" "C3'" sing N N 115 40G "H15'" "C5'" sing N N 116 40G H2MB C2M sing N N 117 40G OXT HXT sing N N 118 40T C O doub N N 119 40T C "C5'" sing N N 120 40T C OXT sing N N 121 40T N1 "C8'" sing N N 122 40T N1 C6 sing N N 123 40T C2 N1 sing N N 124 40T O2 C2 doub N N 125 40T N3 C2 sing N N 126 40T N3 C4 sing N N 127 40T C4 C5 sing N N 128 40T O4 C4 doub N N 129 40T C5 C6 doub N N 130 40T C5 C7 sing N N 131 40T C6 H6 sing N N 132 40T C7 H7B sing N N 133 40T N H2 sing N N 134 40T CA N sing N N 135 40T CA C2M sing N N 136 40T CA HA sing N N 137 40T C2M H2MB sing N N 138 40T "C3'" CA sing N N 139 40T "N4'" "C3'" sing N N 140 40T "N4'" "C5'" sing N N 141 40T "C5'" "H15'" sing N N 142 40T "C5'" "H25'" sing N N 143 40T "C7'" "N4'" sing N N 144 40T "O7'" "C7'" doub N N 145 40T "C8'" "C7'" sing N N 146 40T "C8'" "HXT'" sing N N 147 40T HN3 N3 sing N N 148 40T H N sing N N 149 40T "H13'" "C3'" sing N N 150 40T "H23'" "C3'" sing N N 151 40T H7 C7 sing N N 152 40T H7A C7 sing N N 153 40T "H28'" "C8'" sing N N 154 40T H2M C2M sing N N 155 40T H2MA C2M sing N N 156 40T OXT HXT sing N N 157 DA OP3 P sing N N 158 DA OP3 HOP3 sing N N 159 DA P OP1 doub N N 160 DA P OP2 sing N N 161 DA P "O5'" sing N N 162 DA OP2 HOP2 sing N N 163 DA "O5'" "C5'" sing N N 164 DA "C5'" "C4'" sing N N 165 DA "C5'" "H5'" sing N N 166 DA "C5'" "H5''" sing N N 167 DA "C4'" "O4'" sing N N 168 DA "C4'" "C3'" sing N N 169 DA "C4'" "H4'" sing N N 170 DA "O4'" "C1'" sing N N 171 DA "C3'" "O3'" sing N N 172 DA "C3'" "C2'" sing N N 173 DA "C3'" "H3'" sing N N 174 DA "O3'" "HO3'" sing N N 175 DA "C2'" "C1'" sing N N 176 DA "C2'" "H2'" sing N N 177 DA "C2'" "H2''" sing N N 178 DA "C1'" N9 sing N N 179 DA "C1'" "H1'" sing N N 180 DA N9 C8 sing Y N 181 DA N9 C4 sing Y N 182 DA C8 N7 doub Y N 183 DA C8 H8 sing N N 184 DA N7 C5 sing Y N 185 DA C5 C6 sing Y N 186 DA C5 C4 doub Y N 187 DA C6 N6 sing N N 188 DA C6 N1 doub Y N 189 DA N6 H61 sing N N 190 DA N6 H62 sing N N 191 DA N1 C2 sing Y N 192 DA C2 N3 doub Y N 193 DA C2 H2 sing N N 194 DA N3 C4 sing Y N 195 DC OP3 P sing N N 196 DC OP3 HOP3 sing N N 197 DC P OP1 doub N N 198 DC P OP2 sing N N 199 DC P "O5'" sing N N 200 DC OP2 HOP2 sing N N 201 DC "O5'" "C5'" sing N N 202 DC "C5'" "C4'" sing N N 203 DC "C5'" "H5'" sing N N 204 DC "C5'" "H5''" sing N N 205 DC "C4'" "O4'" sing N N 206 DC "C4'" "C3'" sing N N 207 DC "C4'" "H4'" sing N N 208 DC "O4'" "C1'" sing N N 209 DC "C3'" "O3'" sing N N 210 DC "C3'" "C2'" sing N N 211 DC "C3'" "H3'" sing N N 212 DC "O3'" "HO3'" sing N N 213 DC "C2'" "C1'" sing N N 214 DC "C2'" "H2'" sing N N 215 DC "C2'" "H2''" sing N N 216 DC "C1'" N1 sing N N 217 DC "C1'" "H1'" sing N N 218 DC N1 C2 sing N N 219 DC N1 C6 sing N N 220 DC C2 O2 doub N N 221 DC C2 N3 sing N N 222 DC N3 C4 doub N N 223 DC C4 N4 sing N N 224 DC C4 C5 sing N N 225 DC N4 H41 sing N N 226 DC N4 H42 sing N N 227 DC C5 C6 doub N N 228 DC C5 H5 sing N N 229 DC C6 H6 sing N N 230 DG OP3 P sing N N 231 DG OP3 HOP3 sing N N 232 DG P OP1 doub N N 233 DG P OP2 sing N N 234 DG P "O5'" sing N N 235 DG OP2 HOP2 sing N N 236 DG "O5'" "C5'" sing N N 237 DG "C5'" "C4'" sing N N 238 DG "C5'" "H5'" sing N N 239 DG "C5'" "H5''" sing N N 240 DG "C4'" "O4'" sing N N 241 DG "C4'" "C3'" sing N N 242 DG "C4'" "H4'" sing N N 243 DG "O4'" "C1'" sing N N 244 DG "C3'" "O3'" sing N N 245 DG "C3'" "C2'" sing N N 246 DG "C3'" "H3'" sing N N 247 DG "O3'" "HO3'" sing N N 248 DG "C2'" "C1'" sing N N 249 DG "C2'" "H2'" sing N N 250 DG "C2'" "H2''" sing N N 251 DG "C1'" N9 sing N N 252 DG "C1'" "H1'" sing N N 253 DG N9 C8 sing Y N 254 DG N9 C4 sing Y N 255 DG C8 N7 doub Y N 256 DG C8 H8 sing N N 257 DG N7 C5 sing Y N 258 DG C5 C6 sing N N 259 DG C5 C4 doub Y N 260 DG C6 O6 doub N N 261 DG C6 N1 sing N N 262 DG N1 C2 sing N N 263 DG N1 H1 sing N N 264 DG C2 N2 sing N N 265 DG C2 N3 doub N N 266 DG N2 H21 sing N N 267 DG N2 H22 sing N N 268 DG N3 C4 sing N N 269 DT OP3 P sing N N 270 DT OP3 HOP3 sing N N 271 DT P OP1 doub N N 272 DT P OP2 sing N N 273 DT P "O5'" sing N N 274 DT OP2 HOP2 sing N N 275 DT "O5'" "C5'" sing N N 276 DT "C5'" "C4'" sing N N 277 DT "C5'" "H5'" sing N N 278 DT "C5'" "H5''" sing N N 279 DT "C4'" "O4'" sing N N 280 DT "C4'" "C3'" sing N N 281 DT "C4'" "H4'" sing N N 282 DT "O4'" "C1'" sing N N 283 DT "C3'" "O3'" sing N N 284 DT "C3'" "C2'" sing N N 285 DT "C3'" "H3'" sing N N 286 DT "O3'" "HO3'" sing N N 287 DT "C2'" "C1'" sing N N 288 DT "C2'" "H2'" sing N N 289 DT "C2'" "H2''" sing N N 290 DT "C1'" N1 sing N N 291 DT "C1'" "H1'" sing N N 292 DT N1 C2 sing N N 293 DT N1 C6 sing N N 294 DT C2 O2 doub N N 295 DT C2 N3 sing N N 296 DT N3 C4 sing N N 297 DT N3 H3 sing N N 298 DT C4 O4 doub N N 299 DT C4 C5 sing N N 300 DT C5 C7 sing N N 301 DT C5 C6 doub N N 302 DT C7 H71 sing N N 303 DT C7 H72 sing N N 304 DT C7 H73 sing N N 305 DT C6 H6 sing N N 306 EDO C1 O1 sing N N 307 EDO C1 C2 sing N N 308 EDO C1 H11 sing N N 309 EDO C1 H12 sing N N 310 EDO O1 HO1 sing N N 311 EDO C2 O2 sing N N 312 EDO C2 H21 sing N N 313 EDO C2 H22 sing N N 314 EDO O2 HO2 sing N N 315 HOH O H1 sing N N 316 HOH O H2 sing N N 317 LYS N CA sing N N 318 LYS N H sing N N 319 LYS N H2 sing N N 320 LYS CA C sing N N 321 LYS CA CB sing N N 322 LYS CA HA sing N N 323 LYS C O doub N N 324 LYS C OXT sing N N 325 LYS CB CG sing N N 326 LYS CB HB2 sing N N 327 LYS CB HB3 sing N N 328 LYS CG CD sing N N 329 LYS CG HG2 sing N N 330 LYS CG HG3 sing N N 331 LYS CD CE sing N N 332 LYS CD HD2 sing N N 333 LYS CD HD3 sing N N 334 LYS CE NZ sing N N 335 LYS CE HE2 sing N N 336 LYS CE HE3 sing N N 337 LYS NZ HZ1 sing N N 338 LYS NZ HZ2 sing N N 339 LYS NZ HZ3 sing N N 340 LYS OXT HXT sing N N 341 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 'ZINC ION' ZN 5 water HOH #