HEADER ISOMERASE 18-OCT-10 3PA7 TITLE CRYSTAL STRUCTURE OF FKBP FROM PLASMODIUM VIVAX IN COMPLEX WITH TITLE 2 TETRAPEPTIDE ALPF COMPND MOL_ID: 1; COMPND 2 MOLECULE: 70 KDA PEPTIDYLPROLYL ISOMERASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-126; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 4-MER PEPTIDE ALPF; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 STRAIN: SALVADOR I; SOURCE 5 GENE: PVX_101260; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PLASMODIUM VIVAX, FKBP35, ISOMERASE, PPIASE, FK506 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BALAKRISHNA,R.ALAG,H.S.YOON REVDAT 3 01-NOV-23 3PA7 1 REMARK REVDAT 2 19-JUN-13 3PA7 1 JRNL REVDAT 1 29-FEB-12 3PA7 0 JRNL AUTH R.ALAG,A.M.BALAKRISHNA,S.RAJAN,I.A.QURESHI,J.SHIN,J.LESCAR, JRNL AUTH 2 G.GRUBER,H.S.YOON JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE BINDING BY PVFKBP35, A JRNL TITL 2 PEPTIDYLPROLYL CIS-TRANS ISOMERASE FROM THE HUMAN MALARIAL JRNL TITL 3 PARASITE PLASMODIUM VIVAX JRNL REF EUKARYOTIC CELL V. 12 627 2013 JRNL REFN ISSN 1535-9778 JRNL PMID 23435727 JRNL DOI 10.1128/EC.00016-13 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.ALAG,I.A.QURESHI,N.BHARATHAM,J.SHIN,J.LESCAR,H.S.YOON REMARK 1 TITL NMR AND CRYSTALLOGRAPHIC STRUCTURES OF THE FK506 BINDING REMARK 1 TITL 2 DOMAIN OF HUMAN MALARIAL PARASITE PLASMODIUM VIVAX FKBP35 REMARK 1 REF PROTEIN SCI. V. 19 1577 2010 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 20572013 REMARK 1 DOI 10.1002/PRO.438 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 6362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 625 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 375 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1947 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.27000 REMARK 3 B22 (A**2) : 2.83000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.483 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1978 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2653 ; 1.338 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 5.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.984 ;25.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;18.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1491 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1230 ; 0.539 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1973 ; 1.016 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 748 ; 1.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 1.965 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 125 1 REMARK 3 1 B 5 B 125 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 934 ; 0.130 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 934 ; 0.480 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4020 8.6572 -25.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0214 REMARK 3 T33: 0.0466 T12: -0.0119 REMARK 3 T13: -0.0188 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.1406 L22: 1.2503 REMARK 3 L33: 0.4849 L12: -0.2585 REMARK 3 L13: -0.0281 L23: -0.1194 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0430 S13: -0.0121 REMARK 3 S21: 0.0603 S22: 0.0096 S23: -0.0072 REMARK 3 S31: -0.0017 S32: -0.0135 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -33.4023 11.3287 -6.0821 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.1248 REMARK 3 T33: 0.0094 T12: -0.0228 REMARK 3 T13: 0.0076 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.3564 L22: 1.5740 REMARK 3 L33: 1.3032 L12: -0.0072 REMARK 3 L13: -0.9706 L23: -0.4081 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: -0.1956 S13: -0.0988 REMARK 3 S21: -0.0508 S22: 0.0207 S23: 0.0100 REMARK 3 S31: -0.0515 S32: 0.3332 S33: 0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3PA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.02800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 22.03 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BICINE, 2.4M AMMONIUM SULFATE, REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.48150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.48150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 6 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 ASP B 95 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 86 128.39 -39.31 REMARK 500 LEU D 2 84.67 47.83 REMARK 500 PRO D 3 -161.61 -106.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FK506 DBREF 3PA7 A 1 126 UNP A5K8X6 A5K8X6_PLAVI 1 126 DBREF 3PA7 B 1 126 UNP A5K8X6 A5K8X6_PLAVI 1 126 DBREF 3PA7 D 1 4 PDB 3PA7 3PA7 1 4 SEQRES 1 A 126 MET GLU GLN GLU THR LEU GLU GLN VAL HIS LEU THR GLU SEQRES 2 A 126 ASP GLY GLY VAL VAL LYS THR ILE LEU ARG LYS GLY GLU SEQRES 3 A 126 GLY GLY GLU GLU ASN ALA PRO LYS LYS GLY ASN GLU VAL SEQRES 4 A 126 THR VAL HIS TYR VAL GLY LYS LEU GLU SER SER GLY LYS SEQRES 5 A 126 VAL PHE ASP SER SER ARG GLU ARG ASN VAL PRO PHE LYS SEQRES 6 A 126 PHE HIS LEU GLY GLN GLY GLU VAL ILE LYS GLY TRP ASP SEQRES 7 A 126 ILE CYS VAL ALA SER MET THR LYS ASN GLU LYS CYS SER SEQRES 8 A 126 VAL ARG LEU ASP SER LYS TYR GLY TYR GLY GLU GLU GLY SEQRES 9 A 126 CYS GLY GLU SER ILE PRO GLY ASN SER VAL LEU ILE PHE SEQRES 10 A 126 GLU ILE GLU LEU ILE SER PHE ARG GLU SEQRES 1 B 126 MET GLU GLN GLU THR LEU GLU GLN VAL HIS LEU THR GLU SEQRES 2 B 126 ASP GLY GLY VAL VAL LYS THR ILE LEU ARG LYS GLY GLU SEQRES 3 B 126 GLY GLY GLU GLU ASN ALA PRO LYS LYS GLY ASN GLU VAL SEQRES 4 B 126 THR VAL HIS TYR VAL GLY LYS LEU GLU SER SER GLY LYS SEQRES 5 B 126 VAL PHE ASP SER SER ARG GLU ARG ASN VAL PRO PHE LYS SEQRES 6 B 126 PHE HIS LEU GLY GLN GLY GLU VAL ILE LYS GLY TRP ASP SEQRES 7 B 126 ILE CYS VAL ALA SER MET THR LYS ASN GLU LYS CYS SER SEQRES 8 B 126 VAL ARG LEU ASP SER LYS TYR GLY TYR GLY GLU GLU GLY SEQRES 9 B 126 CYS GLY GLU SER ILE PRO GLY ASN SER VAL LEU ILE PHE SEQRES 10 B 126 GLU ILE GLU LEU ILE SER PHE ARG GLU SEQRES 1 D 4 ALA LEU PRO PHE FORMUL 4 HOH *150(H2 O) HELIX 1 1 GLY A 28 ALA A 32 5 5 HELIX 2 2 SER A 57 ASN A 61 1 5 HELIX 3 3 ILE A 74 SER A 83 1 10 HELIX 4 4 SER A 96 GLY A 99 5 4 HELIX 5 5 GLY B 28 ALA B 32 5 5 HELIX 6 6 SER B 57 ASN B 61 1 5 HELIX 7 7 ILE B 74 SER B 83 1 10 HELIX 8 8 SER B 96 GLY B 99 5 4 SHEET 1 A 6 GLN A 8 HIS A 10 0 SHEET 2 A 6 VAL A 17 ARG A 23 -1 O LYS A 19 N VAL A 9 SHEET 3 A 6 LYS A 89 LEU A 94 -1 O LYS A 89 N ARG A 23 SHEET 4 A 6 LEU A 115 ARG A 125 -1 O LEU A 115 N LEU A 94 SHEET 5 A 6 GLU A 38 LEU A 47 -1 N THR A 40 O SER A 123 SHEET 6 A 6 VAL A 53 SER A 56 -1 O ASP A 55 N GLY A 45 SHEET 1 B 6 GLN A 8 HIS A 10 0 SHEET 2 B 6 VAL A 17 ARG A 23 -1 O LYS A 19 N VAL A 9 SHEET 3 B 6 LYS A 89 LEU A 94 -1 O LYS A 89 N ARG A 23 SHEET 4 B 6 LEU A 115 ARG A 125 -1 O LEU A 115 N LEU A 94 SHEET 5 B 6 GLU A 38 LEU A 47 -1 N THR A 40 O SER A 123 SHEET 6 B 6 PHE A 64 HIS A 67 -1 O PHE A 66 N VAL A 39 SHEET 1 C 6 GLN B 8 HIS B 10 0 SHEET 2 C 6 VAL B 17 ARG B 23 -1 O LYS B 19 N VAL B 9 SHEET 3 C 6 LYS B 89 LEU B 94 -1 O ARG B 93 N VAL B 18 SHEET 4 C 6 LEU B 115 ARG B 125 -1 O LEU B 115 N LEU B 94 SHEET 5 C 6 GLU B 38 LEU B 47 -1 N HIS B 42 O GLU B 120 SHEET 6 C 6 VAL B 53 SER B 56 -1 O ASP B 55 N GLY B 45 SHEET 1 D 6 GLN B 8 HIS B 10 0 SHEET 2 D 6 VAL B 17 ARG B 23 -1 O LYS B 19 N VAL B 9 SHEET 3 D 6 LYS B 89 LEU B 94 -1 O ARG B 93 N VAL B 18 SHEET 4 D 6 LEU B 115 ARG B 125 -1 O LEU B 115 N LEU B 94 SHEET 5 D 6 GLU B 38 LEU B 47 -1 N HIS B 42 O GLU B 120 SHEET 6 D 6 PHE B 64 HIS B 67 -1 O PHE B 66 N VAL B 39 SSBOND 1 CYS A 105 CYS A 105 1555 2554 2.49 CISPEP 1 LEU D 2 PRO D 3 0 -22.50 CRYST1 88.963 41.378 61.303 90.00 95.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011241 0.000000 0.000987 0.00000 SCALE2 0.000000 0.024167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016375 0.00000