HEADER HYDROLASE/HYDROLASE INHIBITOR 22-OCT-10 3PDC TITLE CRYSTAL STRUCTURE OF HYDROLASE DOMAIN OF HUMAN SOLUBLE EPOXIDE TITLE 2 HYDROLASE COMPLEXED WITH A BENZOXAZOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HYDROLASE DOMAIN (UNP RESIDUES 226 TO 548); COMPND 5 SYNONYM: CYTOSOLIC EPOXIDE HYDROLASE, CEH, EPOXIDE HYDRATASE, SOLUBLE COMPND 6 EPOXIDE HYDROLASE, SEH; COMPND 7 EC: 3.3.2.10; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS EPOXIDE HYDROLASE, HYDROLASE, HYPERTENSION, BETA BARREL, ALPHA/BETA KEYWDS 2 HYDROLASE FOLD; EPOXIDE HYDROLASE FOLD, ACTS ON EPOXIDES (ALKENE KEYWDS 3 OXIDES, OXIRANES) AND ARENE OXIDES. PLAYS A ROLE IN XENOBIOTIC KEYWDS 4 METABOLISM BY DEGRADING POTENTIALLY TOXIC EPOXIDES. ALSO DETERMINES KEYWDS 5 STEADY-STATE LEVELS OF PHYSIOLOGICAL MEDIATORS. HAS LOW PHOSPHATASE KEYWDS 6 ACTIVITY, BINDS MG2+, ACETYLATION OF LYSINE, CYTOPLASM; PEROXISOME, KEYWDS 7 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.G.KURUMBAIL,J.M.WILLIAMS REVDAT 3 06-SEP-23 3PDC 1 REMARK REVDAT 2 24-FEB-21 3PDC 1 REMARK SEQADV REVDAT 1 06-APR-11 3PDC 0 JRNL AUTH L.XING,J.J.MCDONALD,S.A.KOLODZIEJ,R.G.KURUMBAIL, JRNL AUTH 2 J.M.WILLIAMS,C.J.WARREN,J.M.O'NEAL,J.E.SKEPNER,S.L.ROBERDS JRNL TITL DISCOVERY OF POTENT INHIBITORS OF SOLUBLE EPOXIDE HYDROLASE JRNL TITL 2 BY COMBINATORIAL LIBRARY DESIGN AND STRUCTURE-BASED VIRTUAL JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 54 1211 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21302953 JRNL DOI 10.1021/JM101382T REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 18003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION OF 5% OF REMARK 3 REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 897 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 104 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.550 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 22.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ISOTROPIC B FACTOR REFINEMENT REMARK 4 REMARK 4 3PDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1S80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-30% PEG6K, 0.1M SODIUM CACODYLATE, REMARK 280 0.07M AMMONIUM ACETATE, 0.1M MAGNESIUM ACETATE, PH 7.4, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.95100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO COPIES OF THE BIOLOGICAL REMARK 300 UNIT(UNIT 1) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.17537 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -39.95100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 89.31732 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 203 REMARK 465 GLY A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 SER A 213 REMARK 465 SER A 214 REMARK 465 GLY A 215 REMARK 465 LEU A 216 REMARK 465 VAL A 217 REMARK 465 PRO A 218 REMARK 465 ARG A 219 REMARK 465 GLY A 220 REMARK 465 SER A 221 REMARK 465 HIS A 222 REMARK 465 MET A 223 REMARK 465 MET B 203 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 SER B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 SER B 213 REMARK 465 SER B 214 REMARK 465 GLY B 215 REMARK 465 LEU B 216 REMARK 465 VAL B 217 REMARK 465 PRO B 218 REMARK 465 ARG B 219 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 465 HIS B 222 REMARK 465 MET B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 408 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 408 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 408 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LEU A 488 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 408 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 408 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG B 408 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU B 488 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 229 -164.11 -104.83 REMARK 500 PRO A 266 76.91 -113.67 REMARK 500 GLU A 267 -142.66 -91.68 REMARK 500 SER A 268 -178.82 -176.53 REMARK 500 ASP A 290 51.31 -106.26 REMARK 500 MET A 291 135.45 -7.37 REMARK 500 PRO A 301 -18.72 -49.09 REMARK 500 ASP A 333 -119.71 61.18 REMARK 500 ASN A 357 -47.16 70.47 REMARK 500 PHE A 407 88.92 -64.94 REMARK 500 SER A 413 178.60 -47.18 REMARK 500 VAL A 415 -30.69 -166.59 REMARK 500 HIS A 419 -70.24 -118.48 REMARK 500 ASN A 430 58.83 -105.34 REMARK 500 LYS A 455 -87.37 -94.96 REMARK 500 SER A 478 -22.46 -178.12 REMARK 500 LEU A 479 -102.44 21.65 REMARK 500 LEU A 498 71.92 -112.79 REMARK 500 HIS A 512 50.69 -115.06 REMARK 500 TRP A 524 49.47 -78.40 REMARK 500 THR A 525 -46.02 -25.02 REMARK 500 ARG A 546 -31.94 -34.50 REMARK 500 SER B 229 -163.58 -105.53 REMARK 500 HIS B 263 -168.54 -76.65 REMARK 500 PRO B 266 77.89 -113.47 REMARK 500 GLU B 267 -142.77 -91.47 REMARK 500 SER B 268 -178.15 -176.21 REMARK 500 ARG B 273 -22.85 -39.64 REMARK 500 ASP B 290 51.81 -104.78 REMARK 500 MET B 291 134.92 -7.23 REMARK 500 PRO B 301 -18.63 -48.83 REMARK 500 ASP B 333 -119.64 61.42 REMARK 500 ASN B 357 -48.05 71.15 REMARK 500 PHE B 407 89.64 -65.90 REMARK 500 SER B 413 178.49 -47.87 REMARK 500 VAL B 415 -30.39 -166.23 REMARK 500 ASN B 430 58.91 -104.76 REMARK 500 LYS B 455 -87.63 -94.74 REMARK 500 SER B 478 -22.54 -178.21 REMARK 500 LEU B 479 -102.28 21.35 REMARK 500 LEU B 498 71.90 -113.19 REMARK 500 HIS B 512 50.95 -114.92 REMARK 500 TRP B 524 49.30 -77.93 REMARK 500 THR B 525 -46.15 -24.80 REMARK 500 ARG B 546 -31.65 -35.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZYI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZYI B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S8O RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE REMARK 900 RELATED ID: 1VJ5 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE- N-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA REMARK 900 COMPLEX REMARK 900 RELATED ID: 1ZD2 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-ETHANOIC REMARK 900 ACID COMPLEX REMARK 900 RELATED ID: 3IIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOLUBLE EPOXIDE HYDROLASE REMARK 900 RELATED ID: 3I28 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOLUBLE EPOXIDE HYDROLASE DBREF 3PDC A 224 547 UNP P34913 HYES_HUMAN 226 548 DBREF 3PDC B 224 547 UNP P34913 HYES_HUMAN 226 548 SEQADV 3PDC MET A 203 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY A 204 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER A 205 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER A 206 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 207 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 208 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 209 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 210 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 211 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 212 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER A 213 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER A 214 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY A 215 UNP P34913 EXPRESSION TAG SEQADV 3PDC LEU A 216 UNP P34913 EXPRESSION TAG SEQADV 3PDC VAL A 217 UNP P34913 EXPRESSION TAG SEQADV 3PDC PRO A 218 UNP P34913 EXPRESSION TAG SEQADV 3PDC ARG A 219 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY A 220 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER A 221 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS A 222 UNP P34913 EXPRESSION TAG SEQADV 3PDC MET A 223 UNP P34913 EXPRESSION TAG SEQADV 3PDC MET B 203 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY B 204 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER B 205 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER B 206 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 207 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 208 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 209 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 210 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 211 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 212 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER B 213 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER B 214 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY B 215 UNP P34913 EXPRESSION TAG SEQADV 3PDC LEU B 216 UNP P34913 EXPRESSION TAG SEQADV 3PDC VAL B 217 UNP P34913 EXPRESSION TAG SEQADV 3PDC PRO B 218 UNP P34913 EXPRESSION TAG SEQADV 3PDC ARG B 219 UNP P34913 EXPRESSION TAG SEQADV 3PDC GLY B 220 UNP P34913 EXPRESSION TAG SEQADV 3PDC SER B 221 UNP P34913 EXPRESSION TAG SEQADV 3PDC HIS B 222 UNP P34913 EXPRESSION TAG SEQADV 3PDC MET B 223 UNP P34913 EXPRESSION TAG SEQRES 1 A 344 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 344 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LEU PRO THR SEQRES 3 A 344 SER CYS ASN PRO SER ASP MET SER HIS GLY TYR VAL THR SEQRES 4 A 344 VAL LYS PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SEQRES 5 A 344 SER GLY PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SEQRES 6 A 344 SER TRP TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA SEQRES 7 A 344 GLN ALA GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY SEQRES 8 A 344 TYR GLY GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR SEQRES 9 A 344 CYS MET GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU SEQRES 10 A 344 ASP LYS LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS SEQRES 11 A 344 ASP TRP GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE SEQRES 12 A 344 TYR PRO GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR SEQRES 13 A 344 PRO PHE ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SEQRES 14 A 344 SER ILE LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR SEQRES 15 A 344 PHE GLN GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN SEQRES 16 A 344 ASN LEU SER ARG THR PHE LYS SER LEU PHE ARG ALA SER SEQRES 17 A 344 ASP GLU SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA SEQRES 18 A 344 GLY GLY LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SEQRES 19 A 344 SER ARG MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL SEQRES 20 A 344 GLN GLN PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN SEQRES 21 A 344 TRP TYR ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS SEQRES 22 A 344 LYS SER LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET SEQRES 23 A 344 VAL THR ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SEQRES 24 A 344 SER GLN HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG SEQRES 25 A 344 GLY HIS ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP SEQRES 26 A 344 LYS PRO THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU SEQRES 27 A 344 ASP SER ASP ALA ARG ASN SEQRES 1 B 344 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 344 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LEU PRO THR SEQRES 3 B 344 SER CYS ASN PRO SER ASP MET SER HIS GLY TYR VAL THR SEQRES 4 B 344 VAL LYS PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SEQRES 5 B 344 SER GLY PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SEQRES 6 B 344 SER TRP TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA SEQRES 7 B 344 GLN ALA GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY SEQRES 8 B 344 TYR GLY GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR SEQRES 9 B 344 CYS MET GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU SEQRES 10 B 344 ASP LYS LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS SEQRES 11 B 344 ASP TRP GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE SEQRES 12 B 344 TYR PRO GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR SEQRES 13 B 344 PRO PHE ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SEQRES 14 B 344 SER ILE LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR SEQRES 15 B 344 PHE GLN GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN SEQRES 16 B 344 ASN LEU SER ARG THR PHE LYS SER LEU PHE ARG ALA SER SEQRES 17 B 344 ASP GLU SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA SEQRES 18 B 344 GLY GLY LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SEQRES 19 B 344 SER ARG MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL SEQRES 20 B 344 GLN GLN PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN SEQRES 21 B 344 TRP TYR ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS SEQRES 22 B 344 LYS SER LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET SEQRES 23 B 344 VAL THR ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SEQRES 24 B 344 SER GLN HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG SEQRES 25 B 344 GLY HIS ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP SEQRES 26 B 344 LYS PRO THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU SEQRES 27 B 344 ASP SER ASP ALA ARG ASN HET ZYI A 1 19 HET ZYI B 2 19 HETNAM ZYI N-(5-CHLORO-1,3-BENZOXAZOL-2-YL)-2-CYCLOPENTYLACETAMIDE FORMUL 3 ZYI 2(C14 H15 CL N2 O2) FORMUL 5 HOH *191(H2 O) HELIX 1 1 ASN A 231 MET A 235 5 5 HELIX 2 2 SER A 268 ARG A 273 5 6 HELIX 3 3 TYR A 274 ALA A 282 1 9 HELIX 4 4 GLU A 302 TYR A 306 5 5 HELIX 5 5 CYS A 307 GLY A 323 1 17 HELIX 6 6 ASP A 333 PHE A 345 1 13 HELIX 7 7 TYR A 346 GLU A 348 5 3 HELIX 8 8 ASN A 376 VAL A 378 5 3 HELIX 9 9 PHE A 379 GLU A 387 1 9 HELIX 10 10 GLY A 389 ASN A 398 1 10 HELIX 11 11 ASN A 398 PHE A 407 1 10 HELIX 12 12 ALA A 409 SER A 413 5 5 HELIX 13 13 LYS A 420 GLY A 425 1 6 HELIX 14 14 THR A 442 PHE A 453 1 12 HELIX 15 15 PHE A 458 TRP A 464 1 7 HELIX 16 16 ASN A 467 LYS A 477 1 11 HELIX 17 17 SER A 503 ASP A 508 5 6 HELIX 18 18 TRP A 524 LYS A 529 1 6 HELIX 19 19 LYS A 529 ASP A 542 1 14 HELIX 20 20 ASN B 231 MET B 235 5 5 HELIX 21 21 SER B 268 ARG B 273 5 6 HELIX 22 22 TYR B 274 ALA B 282 1 9 HELIX 23 23 GLU B 302 TYR B 306 5 5 HELIX 24 24 CYS B 307 GLY B 323 1 17 HELIX 25 25 ASP B 333 PHE B 345 1 13 HELIX 26 26 TYR B 346 GLU B 348 5 3 HELIX 27 27 ASN B 376 VAL B 378 5 3 HELIX 28 28 PHE B 379 GLU B 387 1 9 HELIX 29 29 GLY B 389 ASN B 398 1 10 HELIX 30 30 ASN B 398 PHE B 407 1 10 HELIX 31 31 ALA B 409 SER B 413 5 5 HELIX 32 32 LYS B 420 GLY B 425 1 6 HELIX 33 33 THR B 442 PHE B 453 1 12 HELIX 34 34 PHE B 458 TRP B 464 1 7 HELIX 35 35 ASN B 467 LYS B 477 1 11 HELIX 36 36 SER B 503 ASP B 508 5 6 HELIX 37 37 TRP B 524 LYS B 529 1 6 HELIX 38 38 LYS B 529 ASP B 542 1 14 SHEET 1 A 8 HIS A 237 LYS A 243 0 SHEET 2 A 8 VAL A 246 LEU A 253 -1 O VAL A 246 N VAL A 242 SHEET 3 A 8 ARG A 285 MET A 289 -1 O ALA A 288 N VAL A 251 SHEET 4 A 8 ALA A 258 CYS A 262 1 N LEU A 261 O LEU A 287 SHEET 5 A 8 ALA A 327 HIS A 332 1 O VAL A 328 N CYS A 260 SHEET 6 A 8 VAL A 350 LEU A 356 1 O ALA A 354 N PHE A 329 SHEET 7 A 8 ALA A 487 ALA A 492 1 O VAL A 490 N SER A 355 SHEET 8 A 8 LEU A 513 ILE A 518 1 O GLY A 516 N THR A 491 SHEET 1 B 8 HIS B 237 LYS B 243 0 SHEET 2 B 8 VAL B 246 LEU B 253 -1 O VAL B 246 N VAL B 242 SHEET 3 B 8 ARG B 285 MET B 289 -1 O ALA B 288 N VAL B 251 SHEET 4 B 8 ALA B 258 CYS B 262 1 N VAL B 259 O LEU B 287 SHEET 5 B 8 ALA B 327 HIS B 332 1 O VAL B 328 N CYS B 260 SHEET 6 B 8 VAL B 350 LEU B 356 1 O ALA B 354 N PHE B 329 SHEET 7 B 8 ALA B 487 ALA B 492 1 O VAL B 490 N SER B 355 SHEET 8 B 8 LEU B 513 ILE B 518 1 O GLY B 516 N THR B 491 CISPEP 1 PHE A 265 PRO A 266 0 -0.72 CISPEP 2 PHE B 265 PRO B 266 0 -0.77 SITE 1 AC1 10 PHE A 265 ASP A 333 MET A 337 TYR A 381 SITE 2 AC1 10 GLN A 382 LEU A 406 LEU A 427 TYR A 465 SITE 3 AC1 10 HIS A 523 TRP A 524 SITE 1 AC2 11 PHE B 265 ASP B 333 TRP B 334 THR B 358 SITE 2 AC2 11 TYR B 381 GLN B 382 LEU B 406 LEU B 427 SITE 3 AC2 11 TYR B 465 HIS B 523 TRP B 524 CRYST1 46.523 79.902 89.318 90.00 90.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021495 0.000000 0.000084 0.00000 SCALE2 0.000000 0.012515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011196 0.00000