HEADER LIPID BINDING PROTEIN 26-OCT-10 3PEG TITLE CRYSTAL STRUCTURE OF NEUROFIBROMINS SEC14-PH MODULE CONTAINING A TITLE 2 PATIENT DERIVED DUPLICATION (TD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROFIBROMIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEUROFIBROMATOSIS-RELATED PROTEIN NF-1, NEUROFIBROMIN COMPND 5 TRUNCATED; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SEC14 DOMAIN, PLECKSTRIN HOMOLOGY DOMAIN, PH DOMAIN, KEYWDS 2 PHOSPHATIDYLETHANOLAMIN BINDING, LIPID BINDING, LIPID BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WELTI,S.KUEN,I.D'ANGELO,K.SCHEFFZEK REVDAT 5 17-JUL-19 3PEG 1 REMARK REVDAT 4 02-AUG-17 3PEG 1 SOURCE REMARK REVDAT 3 13-APR-11 3PEG 1 DBREF REMARK REVDAT 2 16-FEB-11 3PEG 1 JRNL REVDAT 1 08-DEC-10 3PEG 0 JRNL AUTH S.WELTI,S.KUHN,I.D'ANGELO,B.BRUGGER,D.KAUFMANN,K.SCHEFFZEK JRNL TITL STRUCTURAL AND BIOCHEMICAL CONSEQUENCES OF NF1 ASSOCIATED JRNL TITL 2 NONTRUNCATING MUTATIONS IN THE SEC14-PH MODULE OF JRNL TITL 3 NEUROFIBROMIN. JRNL REF HUM.MUTAT. V. 32 191 2011 JRNL REFN ISSN 1059-7794 JRNL PMID 21089070 JRNL DOI 10.1002/HUMU.21405 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5703 - 3.9984 0.99 3229 171 0.2030 0.2362 REMARK 3 2 3.9984 - 3.1781 0.98 3057 160 0.2261 0.2785 REMARK 3 3 3.1781 - 2.7776 0.98 3006 159 0.2579 0.3028 REMARK 3 4 2.7776 - 2.5240 0.85 2584 136 0.2973 0.3473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 52.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08780 REMARK 3 B22 (A**2) : 0.08780 REMARK 3 B33 (A**2) : -0.17550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2077 REMARK 3 ANGLE : 0.613 2809 REMARK 3 CHIRALITY : 0.042 312 REMARK 3 PLANARITY : 0.002 342 REMARK 3 DIHEDRAL : 13.845 765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1566:1683) REMARK 3 ORIGIN FOR THE GROUP (A): 78.0958 -9.5109 25.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.3929 T22: 0.4165 REMARK 3 T33: 0.3553 T12: 0.0079 REMARK 3 T13: -0.0391 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.3620 L22: 2.8745 REMARK 3 L33: 0.9549 L12: 0.0972 REMARK 3 L13: 0.6670 L23: -1.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: 0.2334 S13: 0.0275 REMARK 3 S21: -0.0407 S22: -0.1127 S23: 0.1038 REMARK 3 S31: 0.1661 S32: 0.1452 S33: 0.0975 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1684:1709D) REMARK 3 ORIGIN FOR THE GROUP (A): 75.8961 2.5735 19.7403 REMARK 3 T TENSOR REMARK 3 T11: 0.5526 T22: 0.5835 REMARK 3 T33: 0.4631 T12: -0.0544 REMARK 3 T13: -0.1859 T23: -0.1381 REMARK 3 L TENSOR REMARK 3 L11: 1.5285 L22: 0.3415 REMARK 3 L33: 1.8268 L12: 0.5873 REMARK 3 L13: 0.8115 L23: 0.4650 REMARK 3 S TENSOR REMARK 3 S11: -0.5632 S12: 0.5080 S13: -0.3770 REMARK 3 S21: -0.4765 S22: 0.0538 S23: 0.3462 REMARK 3 S31: -0.4990 S32: -0.3632 S33: 0.2945 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1710D:1765) REMARK 3 ORIGIN FOR THE GROUP (A): 71.6262 12.7591 28.3455 REMARK 3 T TENSOR REMARK 3 T11: 0.5011 T22: 0.3443 REMARK 3 T33: 0.5216 T12: -0.0509 REMARK 3 T13: -0.0622 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5660 L22: 0.9748 REMARK 3 L33: 0.8930 L12: -0.5389 REMARK 3 L13: 0.0772 L23: -0.6757 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.1398 S13: -0.2170 REMARK 3 S21: 0.3794 S22: 0.0733 S23: -0.2331 REMARK 3 S31: -0.3978 S32: 0.2131 S33: -0.1143 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 1766:1816) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9550 14.7294 31.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.6047 T22: 0.4402 REMARK 3 T33: 0.5427 T12: 0.0549 REMARK 3 T13: 0.1474 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.8882 L22: 2.1255 REMARK 3 L33: 0.8655 L12: 0.1424 REMARK 3 L13: -0.1569 L23: -1.1422 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.1667 S13: 0.0664 REMARK 3 S21: 0.8790 S22: 0.2498 S23: 0.6430 REMARK 3 S31: -0.6245 S32: -0.1465 S33: -0.2683 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 19.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M HEPES, 39% PEG 400, 0.2M REMARK 280 (NH4)2SO4, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.76667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.53333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.76667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 52.30000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -90.58626 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.53333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1541 REMARK 465 ALA A 1542 REMARK 465 MET A 1543 REMARK 465 GLY A 1544 REMARK 465 SER A 1545 REMARK 465 SER A 1546 REMARK 465 LYS A 1547 REMARK 465 PHE A 1548 REMARK 465 GLU A 1549 REMARK 465 GLU A 1550 REMARK 465 PHE A 1551 REMARK 465 MET A 1552 REMARK 465 THR A 1553 REMARK 465 ARG A 1554 REMARK 465 HIS A 1555 REMARK 465 GLN A 1556 REMARK 465 VAL A 1557 REMARK 465 HIS A 1558 REMARK 465 GLU A 1559 REMARK 465 LYS A 1560 REMARK 465 GLU A 1561 REMARK 465 GLU A 1562 REMARK 465 PHE A 1563 REMARK 465 LEU A 1694 REMARK 465 ALA A 1695 REMARK 465 GLU A 1696 REMARK 465 HIS A 1697 REMARK 465 ILE A 1698 REMARK 465 GLU A 1699 REMARK 465 HIS A 1700 REMARK 465 GLU A 1701 REMARK 465 GLN A 1702 REMARK 465 GLN A 1703 REMARK 465 LYS A 1704 REMARK 465 LEU A 1705 REMARK 465 PRO A 1706 REMARK 465 ALA A 1707 REMARK 465 ALA A 1708 REMARK 465 THR A 1709 REMARK 465 LEU A 1710 REMARK 465 ALA A 1711 REMARK 465 LEU A 1712 REMARK 465 GLY A 1699D REMARK 465 HIS A 1700D REMARK 465 GLU A 1701D REMARK 465 GLN A 1702D REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1703D CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1565 -70.24 -103.59 REMARK 500 ALA A1575 109.19 -164.39 REMARK 500 TYR A1613 -34.54 -134.24 REMARK 500 ALA A1707D -62.63 69.45 REMARK 500 ALA A1726 -153.42 -146.35 REMARK 500 HIS A1793 144.35 -172.68 REMARK 500 GLU A1795 51.88 -107.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEV A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 54 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEV A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E2X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF RESIDUES 1699D-1712D CORRESPOND TO AN INSERTION REMARK 999 BETWEEN RESIDUES 1712 AND 1713 OF THE NATIVE PROTEIN. THIS REMARK 999 INSERTION IS NEARLY A DUPLICATION OF RESIDUES 1699-1712 OF THE REMARK 999 NATIVE PROTEIN WITH ONLY THE FIRST RESIDUE GLY BEING DIFFERENT FROM REMARK 999 THE CORRESPONDING GLU 1699. DBREF 3PEG A 1545 1712 UNP P21359 NF1_HUMAN 1566 1733 DBREF 3PEG A 1699D 1712D UNP P21359 NF1_HUMAN 1720 1733 DBREF 3PEG A 1713 1816 UNP P21359 NF1_HUMAN 1734 1837 SEQADV 3PEG GLY A 1541 UNP P21359 EXPRESSION TAG SEQADV 3PEG ALA A 1542 UNP P21359 EXPRESSION TAG SEQADV 3PEG MET A 1543 UNP P21359 EXPRESSION TAG SEQADV 3PEG GLY A 1544 UNP P21359 EXPRESSION TAG SEQADV 3PEG GLY A 1699D UNP P21359 GLU 1720 SEE REMARK 999 SEQRES 1 A 290 GLY ALA MET GLY SER SER LYS PHE GLU GLU PHE MET THR SEQRES 2 A 290 ARG HIS GLN VAL HIS GLU LYS GLU GLU PHE LYS ALA LEU SEQRES 3 A 290 LYS THR LEU SER ILE PHE TYR GLN ALA GLY THR SER LYS SEQRES 4 A 290 ALA GLY ASN PRO ILE PHE TYR TYR VAL ALA ARG ARG PHE SEQRES 5 A 290 LYS THR GLY GLN ILE ASN GLY ASP LEU LEU ILE TYR HIS SEQRES 6 A 290 VAL LEU LEU THR LEU LYS PRO TYR TYR ALA LYS PRO TYR SEQRES 7 A 290 GLU ILE VAL VAL ASP LEU THR HIS THR GLY PRO SER ASN SEQRES 8 A 290 ARG PHE LYS THR ASP PHE LEU SER LYS TRP PHE VAL VAL SEQRES 9 A 290 PHE PRO GLY PHE ALA TYR ASP ASN VAL SER ALA VAL TYR SEQRES 10 A 290 ILE TYR ASN CYS ASN SER TRP VAL ARG GLU TYR THR LYS SEQRES 11 A 290 TYR HIS GLU ARG LEU LEU THR GLY LEU LYS GLY SER LYS SEQRES 12 A 290 ARG LEU VAL PHE ILE ASP CYS PRO GLY LYS LEU ALA GLU SEQRES 13 A 290 HIS ILE GLU HIS GLU GLN GLN LYS LEU PRO ALA ALA THR SEQRES 14 A 290 LEU ALA LEU GLY HIS GLU GLN GLN LYS LEU PRO ALA ALA SEQRES 15 A 290 THR LEU ALA LEU GLU GLU ASP LEU LYS VAL PHE HIS ASN SEQRES 16 A 290 ALA LEU LYS LEU ALA HIS LYS ASP THR LYS VAL SER ILE SEQRES 17 A 290 LYS VAL GLY SER THR ALA VAL GLN VAL THR SER ALA GLU SEQRES 18 A 290 ARG THR LYS VAL LEU GLY GLN SER VAL PHE LEU ASN ASP SEQRES 19 A 290 ILE TYR TYR ALA SER GLU ILE GLU GLU ILE CYS LEU VAL SEQRES 20 A 290 ASP GLU ASN GLN PHE THR LEU THR ILE ALA ASN GLN GLY SEQRES 21 A 290 THR PRO LEU THR PHE MET HIS GLN GLU CYS GLU ALA ILE SEQRES 22 A 290 VAL GLN SER ILE ILE HIS ILE ARG THR ARG TRP GLU LEU SEQRES 23 A 290 SER GLN PRO ASP HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 5 5 HET MG A 54 1 HET PEV A 500 47 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM PEV (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1- HETNAM 2 PEV [(PALMITOYLOXY)METHYL]ETHYL STEARATE HETSYN PEV PHOSPHATIDYLETHANOLAMINE; 1-PALMITOYL-2-OLEOYL-SN- HETSYN 2 PEV GLYCERO-3-PHOSPHOETHANOLAMINE FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 MG MG 2+ FORMUL 8 PEV C39 H78 N O8 P FORMUL 9 HOH *15(H2 O) HELIX 1 1 ALA A 1565 LEU A 1569 5 5 HELIX 2 2 ARG A 1590 PHE A 1592 5 3 HELIX 3 3 ASN A 1598 LYS A 1611 1 14 HELIX 4 4 GLY A 1628 ARG A 1632 5 5 HELIX 5 5 LYS A 1634 SER A 1639 1 6 HELIX 6 6 LYS A 1640 VAL A 1643 5 4 HELIX 7 7 PRO A 1646 ASN A 1652 1 7 HELIX 8 8 ASN A 1662 HIS A 1672 1 11 HELIX 9 9 LEU A 1675 LYS A 1680 5 6 HELIX 10 10 ALA A 1707D LEU A 1712D 1 6 HELIX 11 11 GLU A 1795 SER A 1813 1 19 SHEET 1 A 5 PHE A1572 THR A1577 0 SHEET 2 A 5 PRO A1583 VAL A1588 -1 O TYR A1586 N TYR A1573 SHEET 3 A 5 TYR A1618 ASP A1623 1 O VAL A1621 N PHE A1585 SHEET 4 A 5 VAL A1653 TYR A1659 1 O TYR A1659 N VAL A1622 SHEET 5 A 5 LEU A1685 ILE A1688 1 O VAL A1686 N ILE A1658 SHEET 1 B 7 ASN A1759 TYR A1763 0 SHEET 2 B 7 ALA A1740 SER A1745 -1 N VAL A1741 O TYR A1762 SHEET 3 B 7 THR A1730 VAL A1736 -1 N LYS A1735 O GLN A1742 SHEET 4 B 7 LYS A1717 LYS A1724 -1 N LYS A1724 O THR A1730 SHEET 5 B 7 LEU A1789 MET A1792 -1 O MET A1792 N LEU A1723 SHEET 6 B 7 GLN A1777 ILE A1782 -1 N LEU A1780 O LEU A1789 SHEET 7 B 7 ILE A1767 ASP A1774 -1 N CYS A1771 O THR A1779 SHEET 1 C 2 THR A1749 VAL A1751 0 SHEET 2 C 2 GLN A1754 VAL A1756 -1 O GLN A1754 N VAL A1751 SSBOND 1 CYS A 1690 CYS A 1690 1555 10665 2.04 SITE 1 AC1 5 ARG A1590 ARG A1591 PRO A1706D ALA A1708D SITE 2 AC1 5 THR A1709D SITE 1 AC2 3 ARG A1666 THR A1749 LYS A1750 SITE 1 AC3 3 ARG A1632 LYS A1634 THR A1635 SITE 1 AC4 3 ARG A1666 ALA A1726 HIS A1727 SITE 1 AC5 3 SER A1682 LYS A1683 ARG A1684 SITE 1 AC6 3 PRO A1629 SER A1630 ASN A1784 SITE 1 AC7 12 PHE A1572 TYR A1618 PHE A1633 TRP A1641 SITE 2 AC7 12 PHE A1642 PHE A1645 TYR A1650 VAL A1653 SITE 3 AC7 12 TYR A1668 ARG A1674 THR A1677 GLY A1678 CRYST1 104.600 104.600 116.300 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009560 0.005520 0.000000 0.00000 SCALE2 0.000000 0.011039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008598 0.00000