HEADER SIGNALING PROTEIN 28-OCT-10 3PFM TITLE CRYSTAL STRUCTURE OF A EAL DOMAIN OF GGDEF DOMAIN PROTEIN FROM TITLE 2 PSEUDOMONAS FLUORESCENS PF COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: PF-5; SOURCE 5 GENE: PFL_0131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PSI2, MCSG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, EAL DOMAIN, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.STEIN,N.MARSHALL,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3PFM 1 REMARK REVDAT 1 10-NOV-10 3PFM 0 JRNL AUTH B.NOCEK,A.STEIN,N.MARSHALL,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF A EAL DOMAIN OF GGDEF DOMAIN PROTEIN JRNL TITL 2 FROM PSEUDOMONAS FLUORESCENS PF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 14102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9669 - 4.9710 0.98 2980 133 0.1828 0.2244 REMARK 3 2 4.9710 - 3.9464 0.98 2859 154 0.1442 0.1812 REMARK 3 3 3.9464 - 3.4478 0.96 2739 142 0.1738 0.2462 REMARK 3 4 3.4478 - 3.1326 0.91 2595 155 0.2398 0.2839 REMARK 3 5 3.1326 - 2.9082 0.79 2226 119 0.3135 0.3826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 71.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 50.75490 REMARK 3 B22 (A**2) : -15.05630 REMARK 3 B33 (A**2) : -35.69850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1908 REMARK 3 ANGLE : 1.149 2593 REMARK 3 CHIRALITY : 0.072 296 REMARK 3 PLANARITY : 0.004 336 REMARK 3 DIHEDRAL : 21.623 674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 407:411) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7596 11.0298 83.4120 REMARK 3 T TENSOR REMARK 3 T11: 1.9306 T22: 1.3820 REMARK 3 T33: 0.6609 T12: -0.4239 REMARK 3 T13: 0.1217 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.6631 L22: 4.2225 REMARK 3 L33: 7.8552 L12: 4.3101 REMARK 3 L13: -2.7403 L23: -2.5799 REMARK 3 S TENSOR REMARK 3 S11: -2.5661 S12: 2.5192 S13: -0.6992 REMARK 3 S21: 0.6943 S22: 0.3083 S23: -2.0789 REMARK 3 S31: 1.0862 S32: 2.1511 S33: 1.4328 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 412:416) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6961 5.7141 78.4591 REMARK 3 T TENSOR REMARK 3 T11: 1.4961 T22: 1.3784 REMARK 3 T33: 0.4193 T12: 0.0245 REMARK 3 T13: -0.1592 T23: 0.2128 REMARK 3 L TENSOR REMARK 3 L11: 2.0067 L22: 9.6516 REMARK 3 L33: 5.3063 L12: -0.5525 REMARK 3 L13: 1.8607 L23: -7.0375 REMARK 3 S TENSOR REMARK 3 S11: -2.5289 S12: -1.9118 S13: -2.9873 REMARK 3 S21: 1.1974 S22: 2.5255 S23: -0.1189 REMARK 3 S31: -1.2246 S32: 0.2969 S33: -0.3295 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 417:431) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6249 0.6543 66.2331 REMARK 3 T TENSOR REMARK 3 T11: 1.0712 T22: 0.9516 REMARK 3 T33: 0.7382 T12: -0.1459 REMARK 3 T13: 0.0622 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.0430 L22: 2.7727 REMARK 3 L33: 1.5884 L12: -0.6737 REMARK 3 L13: -0.3913 L23: -0.1063 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.6363 S13: -0.0600 REMARK 3 S21: 1.1394 S22: 0.4501 S23: 0.4646 REMARK 3 S31: 0.1249 S32: -1.1407 S33: -0.2001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 432:437) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5997 12.1965 41.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.4241 REMARK 3 T33: 0.6770 T12: -0.2532 REMARK 3 T13: -0.0606 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 6.7871 L22: 6.5113 REMARK 3 L33: 9.8171 L12: -1.3741 REMARK 3 L13: 5.9225 L23: -4.8997 REMARK 3 S TENSOR REMARK 3 S11: -0.6676 S12: -0.7507 S13: 0.0198 REMARK 3 S21: 0.3958 S22: 0.7007 S23: 0.4663 REMARK 3 S31: -1.7203 S32: -0.6422 S33: 0.5113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 438:454) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4239 7.0219 53.0906 REMARK 3 T TENSOR REMARK 3 T11: 0.7897 T22: 0.8538 REMARK 3 T33: 0.5107 T12: 0.0155 REMARK 3 T13: -0.0103 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 2.2764 L22: -0.3856 REMARK 3 L33: 1.3143 L12: -0.5761 REMARK 3 L13: 1.2363 L23: -0.2346 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: -0.5455 S13: 0.2523 REMARK 3 S21: 0.2630 S22: 0.0390 S23: 0.1888 REMARK 3 S31: 0.5681 S32: -1.0832 S33: 0.2636 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 455:460) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5680 7.8969 67.5412 REMARK 3 T TENSOR REMARK 3 T11: 1.0260 T22: 1.8519 REMARK 3 T33: 1.1099 T12: -0.0731 REMARK 3 T13: -0.0778 T23: 0.1796 REMARK 3 L TENSOR REMARK 3 L11: 3.2816 L22: 4.0108 REMARK 3 L33: 2.2927 L12: -2.7394 REMARK 3 L13: -2.5811 L23: 2.7460 REMARK 3 S TENSOR REMARK 3 S11: 1.0199 S12: -1.3199 S13: 1.1648 REMARK 3 S21: 0.8131 S22: -0.8648 S23: 1.4805 REMARK 3 S31: 1.2651 S32: -4.1741 S33: -0.9856 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 461:475) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7891 9.4586 71.0747 REMARK 3 T TENSOR REMARK 3 T11: 1.4140 T22: 1.0277 REMARK 3 T33: 0.4936 T12: -0.0511 REMARK 3 T13: 0.0051 T23: 0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.5103 L22: 3.1444 REMARK 3 L33: 0.7466 L12: 1.1949 REMARK 3 L13: -0.1472 L23: 0.8524 REMARK 3 S TENSOR REMARK 3 S11: 0.7562 S12: -0.9307 S13: 0.3354 REMARK 3 S21: 1.7307 S22: -0.8668 S23: -0.7137 REMARK 3 S31: -1.5024 S32: -0.5134 S33: 0.1145 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 476:481) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5646 0.5731 64.5949 REMARK 3 T TENSOR REMARK 3 T11: 1.1614 T22: 0.8550 REMARK 3 T33: 0.7642 T12: 0.0539 REMARK 3 T13: 0.1662 T23: 0.1355 REMARK 3 L TENSOR REMARK 3 L11: 0.9344 L22: 0.8986 REMARK 3 L33: 6.6143 L12: -0.0202 REMARK 3 L13: 2.2459 L23: 1.1169 REMARK 3 S TENSOR REMARK 3 S11: -0.1530 S12: 0.0264 S13: -1.4036 REMARK 3 S21: -0.1801 S22: -0.6127 S23: -0.0108 REMARK 3 S31: -0.1990 S32: -0.3251 S33: 0.1855 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 482:489) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8486 -4.6210 55.6379 REMARK 3 T TENSOR REMARK 3 T11: 0.6269 T22: 0.7791 REMARK 3 T33: 0.8919 T12: 0.0348 REMARK 3 T13: 0.0918 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 5.3340 L22: 4.3808 REMARK 3 L33: 7.6493 L12: 2.3283 REMARK 3 L13: 5.7762 L23: 4.4892 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: -0.6924 S13: -0.1864 REMARK 3 S21: -0.8213 S22: -1.1015 S23: 0.8272 REMARK 3 S31: -0.6333 S32: -0.1760 S33: 0.7868 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 490:500) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3333 -0.5146 50.0828 REMARK 3 T TENSOR REMARK 3 T11: 1.0997 T22: 0.6945 REMARK 3 T33: 0.6290 T12: 0.1080 REMARK 3 T13: 0.1948 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 3.3814 L22: 5.5523 REMARK 3 L33: 1.7855 L12: 2.3249 REMARK 3 L13: -0.4288 L23: 2.2661 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -1.5370 S13: 0.5260 REMARK 3 S21: -1.0556 S22: -0.9398 S23: 1.0229 REMARK 3 S31: -0.4154 S32: -1.2259 S33: 0.3464 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 501:535) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5363 -0.0647 56.2571 REMARK 3 T TENSOR REMARK 3 T11: 0.8189 T22: 0.5561 REMARK 3 T33: 0.5550 T12: 0.0506 REMARK 3 T13: -0.1518 T23: 0.1002 REMARK 3 L TENSOR REMARK 3 L11: 2.5095 L22: 0.2355 REMARK 3 L33: 6.8248 L12: 0.1973 REMARK 3 L13: -0.6513 L23: -0.8374 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: 0.0396 S13: -0.4024 REMARK 3 S21: 0.4855 S22: 0.0729 S23: -0.5064 REMARK 3 S31: 0.7955 S32: -0.2871 S33: 0.0938 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 536:544) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2672 10.9204 55.8795 REMARK 3 T TENSOR REMARK 3 T11: 0.9945 T22: 1.3728 REMARK 3 T33: 1.0310 T12: -0.1127 REMARK 3 T13: 0.3465 T23: 0.2296 REMARK 3 L TENSOR REMARK 3 L11: 8.2247 L22: 5.1859 REMARK 3 L33: 1.7356 L12: -0.6156 REMARK 3 L13: 2.8470 L23: -2.1525 REMARK 3 S TENSOR REMARK 3 S11: 1.2670 S12: -1.5086 S13: -2.2645 REMARK 3 S21: 0.4503 S22: -1.4903 S23: -0.0980 REMARK 3 S31: -0.3605 S32: 0.2749 S33: 0.5324 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 545:554) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9808 0.0657 50.4687 REMARK 3 T TENSOR REMARK 3 T11: 0.7170 T22: 1.0000 REMARK 3 T33: 0.9752 T12: 0.1024 REMARK 3 T13: 0.3508 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 3.4021 L22: 7.5584 REMARK 3 L33: 3.1643 L12: -3.2774 REMARK 3 L13: 0.6337 L23: 2.8590 REMARK 3 S TENSOR REMARK 3 S11: 0.3860 S12: -1.0341 S13: -0.6412 REMARK 3 S21: 0.8635 S22: 0.8674 S23: -1.1618 REMARK 3 S31: 1.2165 S32: 2.3598 S33: -0.4401 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 555:567) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0775 14.3714 50.5455 REMARK 3 T TENSOR REMARK 3 T11: 0.9085 T22: 0.6478 REMARK 3 T33: 1.0819 T12: 0.2631 REMARK 3 T13: -0.0141 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 0.6401 L22: 4.8458 REMARK 3 L33: 3.0737 L12: -1.8416 REMARK 3 L13: 0.2846 L23: 0.3289 REMARK 3 S TENSOR REMARK 3 S11: 0.4449 S12: -0.5674 S13: 0.2317 REMARK 3 S21: 2.6936 S22: -0.3957 S23: -1.8516 REMARK 3 S31: -0.2858 S32: -0.7541 S33: -0.0234 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 568:573) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9351 16.8453 46.8151 REMARK 3 T TENSOR REMARK 3 T11: 0.8512 T22: 1.1912 REMARK 3 T33: 0.8748 T12: 0.2105 REMARK 3 T13: 0.4169 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 5.2102 L22: 9.2361 REMARK 3 L33: 5.0680 L12: 3.3725 REMARK 3 L13: -2.8658 L23: 3.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.8587 S12: -0.4359 S13: 1.6512 REMARK 3 S21: 1.8092 S22: -2.1998 S23: 2.5238 REMARK 3 S31: 0.8840 S32: -0.2915 S33: 0.8977 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 574:586) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4909 15.7637 47.8625 REMARK 3 T TENSOR REMARK 3 T11: 0.7075 T22: 0.7954 REMARK 3 T33: 0.7512 T12: 0.1687 REMARK 3 T13: 0.0046 T23: -0.0868 REMARK 3 L TENSOR REMARK 3 L11: 2.9370 L22: 2.9690 REMARK 3 L33: 0.2297 L12: 3.0467 REMARK 3 L13: 1.1082 L23: 1.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.4208 S12: -0.8885 S13: -0.4058 REMARK 3 S21: -1.0258 S22: -0.2018 S23: 1.2077 REMARK 3 S31: -0.3161 S32: -0.7203 S33: 0.0580 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 587:607) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2453 28.2967 43.8568 REMARK 3 T TENSOR REMARK 3 T11: 0.9575 T22: 0.6495 REMARK 3 T33: 0.9377 T12: 0.1577 REMARK 3 T13: -0.1681 T23: -0.1333 REMARK 3 L TENSOR REMARK 3 L11: 5.3134 L22: 1.4854 REMARK 3 L33: 5.0863 L12: 2.7166 REMARK 3 L13: 0.8085 L23: -0.4595 REMARK 3 S TENSOR REMARK 3 S11: -1.1581 S12: 0.5443 S13: 1.3748 REMARK 3 S21: 0.0660 S22: -0.2425 S23: 0.1096 REMARK 3 S31: -1.6188 S32: 0.1900 S33: 0.6509 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 608:612) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5362 15.2698 37.2591 REMARK 3 T TENSOR REMARK 3 T11: 1.3166 T22: 0.6342 REMARK 3 T33: 1.2466 T12: 0.2061 REMARK 3 T13: 0.2857 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 6.1614 L22: 7.0949 REMARK 3 L33: 0.0113 L12: -2.3648 REMARK 3 L13: 0.3374 L23: -0.1414 REMARK 3 S TENSOR REMARK 3 S11: -0.9632 S12: 0.5036 S13: -1.2739 REMARK 3 S21: -4.9506 S22: -2.2758 S23: -1.8851 REMARK 3 S31: -0.1674 S32: -0.9209 S33: 2.3902 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 613:633) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5510 21.1945 42.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.9499 T22: 0.7418 REMARK 3 T33: 0.9057 T12: 0.1931 REMARK 3 T13: -0.0980 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 5.5969 L22: 4.0508 REMARK 3 L33: 1.3111 L12: -1.3790 REMARK 3 L13: -0.8445 L23: 2.3307 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.0552 S13: 0.6396 REMARK 3 S21: -0.9821 S22: 0.1357 S23: 0.6247 REMARK 3 S31: -0.9975 S32: -0.4397 S33: 0.0813 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 634:648) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7709 10.3689 49.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.7717 T22: 0.6024 REMARK 3 T33: 0.7706 T12: 0.0119 REMARK 3 T13: 0.0182 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.4688 L22: 3.0178 REMARK 3 L33: 0.2163 L12: 0.9638 REMARK 3 L13: -0.6376 L23: -0.2339 REMARK 3 S TENSOR REMARK 3 S11: 0.3535 S12: 0.1785 S13: 0.5205 REMARK 3 S21: -1.7399 S22: -0.1558 S23: 0.0708 REMARK 3 S31: 1.2045 S32: -0.7714 S33: 0.1964 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M NACL, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.32850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.52300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.93050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.52300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.32850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.93050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.32850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.93050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.52300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.93050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.32850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.52300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.65700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.93050 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 406 OG REMARK 470 ASN A 407 CG OD1 ND2 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 GLN A 457 CG CD OE1 NE2 REMARK 470 ARG A 463 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 509 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 470 GLU A 544 CG CD OE1 OE2 REMARK 470 ARG A 551 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 565 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 605 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 620 CG CD OE1 OE2 REMARK 470 GLN A 626 CG CD OE1 NE2 REMARK 470 GLN A 639 CG CD OE1 NE2 REMARK 470 GLU A 643 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 646 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 424 46.75 70.61 REMARK 500 ASP A 478 -51.20 -25.63 REMARK 500 LEU A 511 -73.05 -41.70 REMARK 500 ASN A 512 -33.92 -37.34 REMARK 500 ARG A 565 44.30 -97.97 REMARK 500 ARG A 588 -77.52 -44.69 REMARK 500 LEU A 640 -9.15 -59.23 REMARK 500 PRO A 646 169.82 -44.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38398.2 RELATED DB: TARGETDB DBREF 3PFM A 409 648 UNP Q4KKF5 Q4KKF5_PSEF5 409 648 SEQADV 3PFM SER A 406 UNP Q4KKF5 EXPRESSION TAG SEQADV 3PFM ASN A 407 UNP Q4KKF5 EXPRESSION TAG SEQADV 3PFM ALA A 408 UNP Q4KKF5 EXPRESSION TAG SEQRES 1 A 243 SER ASN ALA ASP HIS HIS ALA TRP HIS ARG LEU LEU ASP SEQRES 2 A 243 ARG ALA LEU SER GLU GLN HIS PHE GLN LEU TYR PHE GLN SEQRES 3 A 243 PRO VAL VAL ALA ALA ARG ASP THR HIS LEU VAL LEU HIS SEQRES 4 A 243 TYR LYS VAL LEU SER ARG LEU LEU ASP GLU GLN GLY GLN SEQRES 5 A 243 THR ILE PRO ALA GLY ARG PHE LEU PRO TRP LEU GLU ARG SEQRES 6 A 243 PHE GLY TRP THR SER ARG LEU ASP LEU LEU MSE LEU GLU SEQRES 7 A 243 GLN VAL LEU ARG GLN MSE ALA SER HIS GLU ASP CYS LEU SEQRES 8 A 243 ALA LEU ASN LEU SER ALA ALA THR LEU ALA ASP PRO HIS SEQRES 9 A 243 ALA LEU ASN ARG VAL PHE GLU ILE LEU ARG GLN HIS SER SEQRES 10 A 243 ASP LEU GLY PRO ARG LEU THR LEU GLU ILE GLY GLU GLU SEQRES 11 A 243 GLN LEU PRO GLU GLN ALA MSE LEU GLU GLN LEU THR ARG SEQRES 12 A 243 ARG LEU ARG GLU LEU GLY PHE SER LEU SER LEU GLN ARG SEQRES 13 A 243 PHE GLY GLY ARG PHE SER MSE ILE GLY ASN LEU ALA ARG SEQRES 14 A 243 LEU GLY LEU ALA TYR LEU LYS ILE ASP GLY SER TYR ILE SEQRES 15 A 243 ARG ASP ILE ASP GLN GLU SER ASP LYS ARG LEU PHE ILE SEQRES 16 A 243 GLU ALA ILE GLN ARG ALA ALA HIS SER ILE ASP LEU PRO SEQRES 17 A 243 LEU ILE ALA GLU ARG VAL GLU THR GLU GLY GLU LEU GLN SEQRES 18 A 243 VAL ILE ARG GLU MSE GLY LEU TYR GLY VAL GLN GLY GLN SEQRES 19 A 243 LEU PHE GLY GLU PRO ALA PRO TRP GLY MODRES 3PFM MSE A 481 MET SELENOMETHIONINE MODRES 3PFM MSE A 489 MET SELENOMETHIONINE MODRES 3PFM MSE A 542 MET SELENOMETHIONINE MODRES 3PFM MSE A 568 MET SELENOMETHIONINE MODRES 3PFM MSE A 631 MET SELENOMETHIONINE HET MSE A 481 8 HET MSE A 489 8 HET MSE A 542 8 HET MSE A 568 8 HET MSE A 631 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *3(H2 O) HELIX 1 1 SER A 406 GLN A 424 1 19 HELIX 2 2 PRO A 460 GLY A 472 1 13 HELIX 3 3 TRP A 473 MSE A 489 1 17 HELIX 4 4 ALA A 490 HIS A 492 5 3 HELIX 5 5 SER A 501 ASP A 507 1 7 HELIX 6 6 ASP A 507 HIS A 521 1 15 HELIX 7 7 SER A 522 GLY A 525 5 4 HELIX 8 8 GLU A 539 GLY A 554 1 16 HELIX 9 9 ARG A 565 GLY A 570 5 6 HELIX 10 10 ASN A 571 GLY A 576 1 6 HELIX 11 11 GLY A 584 ARG A 588 5 5 HELIX 12 12 SER A 594 ILE A 610 1 17 HELIX 13 13 THR A 621 GLY A 632 1 12 HELIX 14 14 GLY A 638 GLY A 642 5 5 SHEET 1 A10 THR A 458 ILE A 459 0 SHEET 2 A10 VAL A 442 LEU A 452 -1 N LEU A 451 O ILE A 459 SHEET 3 A10 LEU A 496 LEU A 500 1 O ALA A 497 N VAL A 447 SHEET 4 A10 LEU A 528 GLY A 533 1 O GLU A 531 N LEU A 498 SHEET 5 A10 SER A 556 PHE A 562 1 O SER A 556 N LEU A 530 SHEET 6 A10 TYR A 579 ILE A 582 1 O LYS A 581 N LEU A 559 SHEET 7 A10 LEU A 614 ALA A 616 1 O ILE A 615 N ILE A 582 SHEET 8 A10 GLY A 635 VAL A 636 1 O GLY A 635 N ALA A 616 SHEET 9 A10 PHE A 426 ALA A 435 -1 N VAL A 434 O VAL A 636 SHEET 10 A10 VAL A 442 LEU A 452 -1 O LEU A 448 N TYR A 429 LINK C LEU A 480 N MSE A 481 1555 1555 1.31 LINK C MSE A 481 N LEU A 482 1555 1555 1.31 LINK C GLN A 488 N MSE A 489 1555 1555 1.33 LINK C MSE A 489 N ALA A 490 1555 1555 1.32 LINK C ALA A 541 N MSE A 542 1555 1555 1.33 LINK C MSE A 542 N LEU A 543 1555 1555 1.32 LINK C SER A 567 N MSE A 568 1555 1555 1.33 LINK C MSE A 568 N ILE A 569 1555 1555 1.33 LINK C GLU A 630 N MSE A 631 1555 1555 1.33 LINK C MSE A 631 N GLY A 632 1555 1555 1.33 CRYST1 78.657 107.861 159.046 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006287 0.00000