HEADER TRANSPORT PROTEIN 03-NOV-10 3PH5 TITLE BOVINE BETA LACTOGLOBULIN CRYSTALLIZED THROUGH LIGANDATION OF YTTRIUM TITLE 2 CATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTOGLOBULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 18-178; COMPND 5 SYNONYM: BETA-LG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,T.STEHLE REVDAT 5 20-NOV-24 3PH5 1 REMARK LINK REVDAT 4 19-FEB-14 3PH5 1 JRNL REVDAT 3 09-NOV-11 3PH5 1 REMARK REVDAT 2 05-OCT-11 3PH5 1 JRNL REVDAT 1 21-SEP-11 3PH5 0 JRNL AUTH F.ZHANG,G.ZOCHER,A.SAUTER,T.STEHLE,F.SCHREIBER JRNL TITL NOVEL APPROACH TO PROTEIN CRYSTALLIZATION THROUGH JRNL TITL 2 LIGANDATION OF YTTRIUM CATIONS JRNL REF J.APPL.CRYSTALLOGR. V. 44 755 2011 JRNL REFN ISSN 0021-8898 JRNL DOI 10.1107/S0021889811017997 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 949 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2446 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.94000 REMARK 3 B22 (A**2) : -3.82000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2492 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3386 ; 0.989 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 5.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;35.729 ;26.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;14.234 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 5.950 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1834 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1583 ; 0.535 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 0.888 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 0.850 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 834 ; 1.190 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4725 -2.6150 -24.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0655 REMARK 3 T33: 0.0476 T12: 0.0115 REMARK 3 T13: 0.0211 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.3605 L22: 5.7033 REMARK 3 L33: 6.7248 L12: -0.1435 REMARK 3 L13: 1.4178 L23: 0.8349 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.1489 S13: -0.2325 REMARK 3 S21: -0.3374 S22: -0.0130 S23: -0.2307 REMARK 3 S31: 0.3531 S32: 0.0529 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8101 2.2892 5.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.0707 REMARK 3 T33: 0.1636 T12: 0.0127 REMARK 3 T13: -0.0695 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.6503 L22: 5.2037 REMARK 3 L33: 6.8449 L12: 1.6861 REMARK 3 L13: 1.6666 L23: -0.1186 REMARK 3 S TENSOR REMARK 3 S11: 0.1926 S12: -0.1227 S13: -0.0669 REMARK 3 S21: 0.8738 S22: -0.0549 S23: -0.3256 REMARK 3 S31: 0.0062 S32: 0.0669 S33: -0.1377 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 6 REMARK 3 RESIDUE RANGE : B 3 B 4 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5009 -1.6154 -20.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.3176 T22: 0.1484 REMARK 3 T33: 0.4036 T12: 0.0545 REMARK 3 T13: 0.1429 T23: -0.1638 REMARK 3 L TENSOR REMARK 3 L11: 1.1952 L22: 0.9565 REMARK 3 L33: 6.1459 L12: 0.0056 REMARK 3 L13: 2.1813 L23: -1.4033 REMARK 3 S TENSOR REMARK 3 S11: 0.1725 S12: 0.1728 S13: -0.3285 REMARK 3 S21: 0.1110 S22: 0.2222 S23: -0.0361 REMARK 3 S31: 0.2650 S32: -0.0409 S33: -0.3947 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 16 REMARK 3 RESIDUE RANGE : A 179 A 193 REMARK 3 RESIDUE RANGE : B 15 B 15 REMARK 3 RESIDUE RANGE : B 179 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9735 1.4686 -15.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0989 REMARK 3 T33: 0.2365 T12: 0.0421 REMARK 3 T13: 0.0177 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2935 L22: 1.9745 REMARK 3 L33: 4.1139 L12: 0.6949 REMARK 3 L13: 0.5369 L23: 0.2980 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: 0.0022 S13: -0.0762 REMARK 3 S21: -0.1921 S22: 0.0414 S23: -0.1762 REMARK 3 S31: -0.0371 S32: -0.1818 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-09; 13-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; SLS REMARK 200 BEAMLINE : NULL; X06DA REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.8233 REMARK 200 MONOCHROMATOR : COPPER; DCCM REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE; REMARK 200 MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14221 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : 0.52300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN PRESENTS OF 3.0 MM REMARK 280 YTTRIUM(III) CHLORID, PH 7, BATCH CRYSTALLIZATION, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 ILE B 18 REMARK 465 VAL B 19 REMARK 465 THR B 20 REMARK 465 GLN B 21 REMARK 465 THR B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 86 CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 LYS A 154 CE NZ REMARK 470 MET B 23 CG SD CE REMARK 470 LYS B 86 CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 117 CE NZ REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLN B 131 CD OE1 NE2 REMARK 470 LYS B 157 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -41.74 74.41 REMARK 500 LYS A 117 -57.70 -126.58 REMARK 500 ASP B 49 3.18 -68.86 REMARK 500 GLU B 81 148.45 -171.43 REMARK 500 TYR B 115 -40.90 69.70 REMARK 500 LYS B 117 -50.64 -130.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 1 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 ASP A 69 OD2 72.4 REMARK 620 3 GLU A 90 OE2 144.5 82.0 REMARK 620 4 GLU A 173 OE1 76.2 27.7 69.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 2 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE2 REMARK 620 2 GLU A 143 OE1 50.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 3 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 81 OE2 REMARK 620 2 GLU B 81 OE1 53.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 4 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 146 OD2 REMARK 620 2 ASP B 146 OD1 40.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PH6 RELATED DB: PDB DBREF 3PH5 A 18 178 UNP P02754 LACB_BOVIN 18 178 DBREF 3PH5 B 18 178 UNP P02754 LACB_BOVIN 18 178 SEQRES 1 A 161 ILE VAL THR GLN THR MET LYS GLY LEU ASP ILE GLN LYS SEQRES 2 A 161 VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SER SEQRES 3 A 161 ASP ILE SER LEU LEU ASP ALA GLN SER ALA PRO LEU ARG SEQRES 4 A 161 VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY ASP SEQRES 5 A 161 LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN GLY GLU CYS SEQRES 6 A 161 ALA GLN LYS LYS ILE ILE ALA GLU LYS THR LYS ILE PRO SEQRES 7 A 161 ALA VAL PHE LYS ILE ASP ALA LEU ASN GLU ASN LYS VAL SEQRES 8 A 161 LEU VAL LEU ASP THR ASP TYR LYS LYS TYR LEU LEU PHE SEQRES 9 A 161 CYS MET GLU ASN SER ALA GLU PRO GLU GLN SER LEU ALA SEQRES 10 A 161 CYS GLN CYS LEU VAL ARG THR PRO GLU VAL ASP ASP GLU SEQRES 11 A 161 ALA LEU GLU LYS PHE ASP LYS ALA LEU LYS ALA LEU PRO SEQRES 12 A 161 MET HIS ILE ARG LEU SER PHE ASN PRO THR GLN LEU GLU SEQRES 13 A 161 GLU GLN CYS HIS ILE SEQRES 1 B 161 ILE VAL THR GLN THR MET LYS GLY LEU ASP ILE GLN LYS SEQRES 2 B 161 VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SER SEQRES 3 B 161 ASP ILE SER LEU LEU ASP ALA GLN SER ALA PRO LEU ARG SEQRES 4 B 161 VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY ASP SEQRES 5 B 161 LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN GLY GLU CYS SEQRES 6 B 161 ALA GLN LYS LYS ILE ILE ALA GLU LYS THR LYS ILE PRO SEQRES 7 B 161 ALA VAL PHE LYS ILE ASP ALA LEU ASN GLU ASN LYS VAL SEQRES 8 B 161 LEU VAL LEU ASP THR ASP TYR LYS LYS TYR LEU LEU PHE SEQRES 9 B 161 CYS MET GLU ASN SER ALA GLU PRO GLU GLN SER LEU ALA SEQRES 10 B 161 CYS GLN CYS LEU VAL ARG THR PRO GLU VAL ASP ASP GLU SEQRES 11 B 161 ALA LEU GLU LYS PHE ASP LYS ALA LEU LYS ALA LEU PRO SEQRES 12 B 161 MET HIS ILE ARG LEU SER PHE ASN PRO THR GLN LEU GLU SEQRES 13 B 161 GLU GLN CYS HIS ILE HET YT3 A 1 1 HET YT3 A 2 1 HET CL A 5 1 HET CL A 6 1 HET YT3 B 3 1 HET YT3 B 4 1 HETNAM YT3 YTTRIUM (III) ION HETNAM CL CHLORIDE ION FORMUL 3 YT3 4(Y 3+) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *39(H2 O) HELIX 1 1 ASP A 27 ALA A 32 5 6 HELIX 2 2 ASP A 44 LEU A 48 5 5 HELIX 3 3 ASP A 145 LYS A 157 1 13 HELIX 4 4 ASN A 168 GLU A 174 1 7 HELIX 5 5 GLN A 175 ILE A 178 5 4 HELIX 6 6 ASP B 27 ALA B 32 5 6 HELIX 7 7 ASP B 44 LEU B 48 5 5 HELIX 8 8 ASP B 145 LEU B 156 1 12 HELIX 9 9 ASN B 168 GLU B 174 1 7 HELIX 10 10 GLN B 175 ILE B 178 5 4 SHEET 1 A20 GLY A 33 THR A 34 0 SHEET 2 A20 VAL A 57 PRO A 64 -1 O LEU A 62 N GLY A 33 SHEET 3 A20 LEU A 70 GLU A 78 -1 O GLU A 71 N LYS A 63 SHEET 4 A20 GLU A 81 LYS A 91 -1 O ILE A 87 N ILE A 72 SHEET 5 A20 VAL A 97 ALA A 102 -1 O LYS A 99 N GLU A 90 SHEET 6 A20 GLU A 105 THR A 113 -1 O VAL A 108 N PHE A 98 SHEET 7 A20 TYR A 118 GLU A 124 -1 O LEU A 120 N ASP A 112 SHEET 8 A20 ALA A 134 VAL A 139 -1 O GLN A 136 N PHE A 121 SHEET 9 A20 TYR A 36 ALA A 42 -1 N ALA A 41 O CYS A 135 SHEET 10 A20 ILE A 163 SER A 166 -1 O LEU A 165 N MET A 40 SHEET 11 A20 ILE B 163 SER B 166 -1 O ARG B 164 N ARG A 164 SHEET 12 A20 TYR B 36 ALA B 42 -1 N MET B 40 O LEU B 165 SHEET 13 A20 ALA B 134 VAL B 139 -1 O CYS B 137 N ALA B 39 SHEET 14 A20 TYR B 118 GLU B 124 -1 N MET B 123 O ALA B 134 SHEET 15 A20 GLU B 105 THR B 113 -1 N ASP B 112 O LEU B 120 SHEET 16 A20 VAL B 97 ALA B 102 -1 N PHE B 98 O VAL B 108 SHEET 17 A20 CYS B 82 LYS B 91 -1 N GLU B 90 O LYS B 99 SHEET 18 A20 LEU B 70 TRP B 77 -1 N ILE B 72 O ILE B 87 SHEET 19 A20 TYR B 58 PRO B 64 -1 N LYS B 63 O GLU B 71 SHEET 20 A20 GLY B 33 THR B 34 -1 N GLY B 33 O LEU B 62 SSBOND 1 CYS A 82 CYS A 176 1555 1555 2.04 SSBOND 2 CYS A 122 CYS A 135 1555 1555 2.03 SSBOND 3 CYS B 82 CYS B 176 1555 1555 2.04 SSBOND 4 CYS B 122 CYS B 135 1555 1555 2.04 LINK Y YT3 A 1 OE1 GLU A 67 1555 1555 2.62 LINK Y YT3 A 1 OD2 ASP A 69 1555 1555 2.21 LINK Y YT3 A 1 OE2 GLU A 90 1555 1555 2.63 LINK Y YT3 A 1 OE1 GLU A 173 3554 1555 2.01 LINK Y YT3 A 2 OE2 GLU A 143 1555 1555 2.43 LINK Y YT3 A 2 OE1 GLU A 143 1555 1555 2.71 LINK Y YT3 B 3 OE2 GLU B 81 1555 1555 2.25 LINK Y YT3 B 3 OE1 GLU B 81 1555 1555 2.58 LINK Y YT3 B 4 OD2 ASP B 146 1555 1555 2.71 LINK Y YT3 B 4 OD1 ASP B 146 1555 1555 3.35 SITE 1 AC1 5 CL A 6 GLU A 67 ASP A 69 GLU A 90 SITE 2 AC1 5 GLU A 173 SITE 1 AC2 5 CL A 5 GLU A 143 GLU B 67 ASP B 69 SITE 2 AC2 5 GLU B 90 SITE 1 AC3 4 YT3 A 2 GLU A 143 GLU B 67 GLU B 90 SITE 1 AC4 4 YT3 A 1 GLU A 67 ASP A 69 GLU A 90 SITE 1 AC5 3 GLU B 81 GLU B 147 GLU B 150 SITE 1 AC6 2 ASP B 146 GLU B 174 CRYST1 40.800 63.570 134.030 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007461 0.00000