data_3PI1 # _entry.id 3PI1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PI1 RCSB RCSB062395 WWPDB D_1000062395 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OLP . unspecified PDB 3PI2 . unspecified PDB 3PI3 . unspecified PDB 3PI4 . unspecified # _pdbx_database_status.entry_id 3PI1 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-11-05 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gavira, J.A.' 1 'Nieves-Marrero, C.A.' 2 'Ruiz-Martinez, C.R.' 3 'Estremera-Andujar, R.A.' 4 'Lopez-Garriga, J.' 5 'Garcia-Ruiz, J.M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Two-step counterdiffusion protocol for the crystallization of heamoglobin II from Lucina pectinata in the pH range 4-9' 'Acta Crystallogr.,Sect.F' F66 264 268 2010 ? DK 1744-3091 ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nieves-Marrero, C.A.' 1 ? primary 'Ruiz-Martinez, C.R.' 2 ? primary 'Estremera-Andujar, R.A.' 3 ? primary 'Lopez-Garriga, J.' 4 ? primary 'Garcia-Ruiz, J.M.' 5 ? primary 'Gavira, J.A.' 6 ? 1 'Nieves-Marrero, C.A.' 7 ? 1 'Ruiz-Martinez, C.R.' 8 ? 1 'Estremera-Andujar, R.A.' 9 ? 1 'Gonzalez-Ramirez, L.A.' 10 ? 1 'Lopez-Garriga, J.' 11 ? 1 'Gavira, J.A.' 12 ? # _cell.entry_id 3PI1 _cell.length_a 75.923 _cell.length_b 75.923 _cell.length_c 153.134 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PI1 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Hemoglobin II' 17041.557 2 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 2 ? ? ? ? 3 non-polymer syn 'OXYGEN MOLECULE' 31.999 2 ? ? ? ? 4 water nat water 18.015 224 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSS FVDHLDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _entity_poly.pdbx_seq_one_letter_code_can ;XTTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDH LDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 THR n 1 3 THR n 1 4 LEU n 1 5 THR n 1 6 ASN n 1 7 PRO n 1 8 GLN n 1 9 LYS n 1 10 ALA n 1 11 ALA n 1 12 ILE n 1 13 ARG n 1 14 SER n 1 15 SER n 1 16 TRP n 1 17 SER n 1 18 LYS n 1 19 PHE n 1 20 MET n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 SER n 1 26 ASN n 1 27 GLY n 1 28 GLN n 1 29 GLY n 1 30 PHE n 1 31 TYR n 1 32 MET n 1 33 ASP n 1 34 LEU n 1 35 PHE n 1 36 LYS n 1 37 ALA n 1 38 HIS n 1 39 PRO n 1 40 GLU n 1 41 THR n 1 42 LEU n 1 43 THR n 1 44 PRO n 1 45 PHE n 1 46 LYS n 1 47 SER n 1 48 LEU n 1 49 PHE n 1 50 GLY n 1 51 GLY n 1 52 LEU n 1 53 THR n 1 54 LEU n 1 55 ALA n 1 56 GLN n 1 57 LEU n 1 58 GLN n 1 59 ASP n 1 60 ASN n 1 61 PRO n 1 62 LYS n 1 63 MET n 1 64 LYS n 1 65 ALA n 1 66 GLN n 1 67 SER n 1 68 LEU n 1 69 VAL n 1 70 PHE n 1 71 CYS n 1 72 ASN n 1 73 GLY n 1 74 MET n 1 75 SER n 1 76 SER n 1 77 PHE n 1 78 VAL n 1 79 ASP n 1 80 HIS n 1 81 LEU n 1 82 ASP n 1 83 ASP n 1 84 ASN n 1 85 ASP n 1 86 MET n 1 87 LEU n 1 88 VAL n 1 89 VAL n 1 90 LEU n 1 91 ILE n 1 92 GLN n 1 93 LYS n 1 94 MET n 1 95 ALA n 1 96 LYS n 1 97 LEU n 1 98 HIS n 1 99 ASN n 1 100 ASN n 1 101 ARG n 1 102 GLY n 1 103 ILE n 1 104 ARG n 1 105 ALA n 1 106 SER n 1 107 ASP n 1 108 LEU n 1 109 ARG n 1 110 THR n 1 111 ALA n 1 112 TYR n 1 113 ASP n 1 114 ILE n 1 115 LEU n 1 116 ILE n 1 117 HIS n 1 118 TYR n 1 119 MET n 1 120 GLU n 1 121 ASP n 1 122 HIS n 1 123 ASN n 1 124 HIS n 1 125 MET n 1 126 VAL n 1 127 GLY n 1 128 GLY n 1 129 ALA n 1 130 LYS n 1 131 ASP n 1 132 ALA n 1 133 TRP n 1 134 GLU n 1 135 VAL n 1 136 PHE n 1 137 VAL n 1 138 GLY n 1 139 PHE n 1 140 ILE n 1 141 CYS n 1 142 LYS n 1 143 THR n 1 144 LEU n 1 145 GLY n 1 146 ASP n 1 147 TYR n 1 148 MET n 1 149 LYS n 1 150 GLU n 1 151 LEU n 1 152 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Lucina pectinata' _entity_src_nat.pdbx_organism_scientific 'Lucina pectinata' _entity_src_nat.pdbx_ncbi_taxonomy_id 244486 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q86G74_LUCPE _struct_ref.pdbx_db_accession Q86G74 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHL DDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PI1 A 2 ? 152 ? Q86G74 2 ? 152 ? 1 151 2 1 3PI1 B 2 ? 152 ? Q86G74 2 ? 152 ? 1 151 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PI1 ACE A 1 ? UNP Q86G74 ? ? 'EXPRESSION TAG' 0 1 2 3PI1 ACE B 1 ? UNP Q86G74 ? ? 'EXPRESSION TAG' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OXY non-polymer . 'OXYGEN MOLECULE' ? O2 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PI1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 62.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Capillary Counterdiffusion' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'Sodium Formate, pH 9.0, Capillary Counterdiffusion, temperature 293.0K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2008-11-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.90750 # _reflns.entry_id 3PI1 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 29432 _reflns.number_all 29432 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_Rsym_value 0.130 _reflns.pdbx_netI_over_sigmaI 7.780 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.512 _reflns_shell.pdbx_Rsym_value 0.512 _reflns_shell.meanI_over_sigI_obs 1.943 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3PI1 _refine.ls_number_reflns_obs 26732 _refine.ls_number_reflns_all 29432 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.09 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.509 _refine.ls_d_res_high 2.002 _refine.ls_percent_reflns_obs 86.34 _refine.ls_R_factor_obs 0.1921 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1901 _refine.ls_R_factor_R_free 0.2308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.97 _refine.ls_number_reflns_R_free 1329 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.220 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9420 _refine.B_iso_mean ? _refine.aniso_B[1][1] 6.9939 _refine.aniso_B[2][2] 6.9939 _refine.aniso_B[3][3] -13.9879 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.420 _refine.solvent_model_param_bsol 59.558 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 23.96 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2354 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 2668 _refine_hist.d_res_high 2.002 _refine_hist.d_res_low 19.509 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.015 ? ? 2609 'X-RAY DIFFRACTION' ? f_angle_d 1.117 ? ? 3568 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.108 ? ? 933 'X-RAY DIFFRACTION' ? f_chiral_restr 0.073 ? ? 370 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 453 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0018 2.0819 2470 0.2816 78.00 0.4130 . . 117 . . . . 'X-RAY DIFFRACTION' . 2.0819 2.1765 2675 0.2390 83.00 0.2524 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.1765 2.2911 2640 0.2219 82.00 0.2759 . . 127 . . . . 'X-RAY DIFFRACTION' . 2.2911 2.4344 2732 0.2136 85.00 0.2521 . . 153 . . . . 'X-RAY DIFFRACTION' . 2.4344 2.6219 2851 0.2113 88.00 0.2610 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.6219 2.8850 2898 0.2081 90.00 0.2460 . . 161 . . . . 'X-RAY DIFFRACTION' . 2.8850 3.3007 2979 0.1965 91.00 0.2554 . . 164 . . . . 'X-RAY DIFFRACTION' . 3.3007 4.1520 3046 0.1523 92.00 0.1875 . . 163 . . . . 'X-RAY DIFFRACTION' . 4.1520 19.5099 3112 0.1655 89.00 0.1938 . . 161 . . . . # _struct.entry_id 3PI1 _struct.title 'Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 9.0' _struct.pdbx_descriptor 'Hemoglobin II' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PI1 _struct_keywords.text 'pH behavior, Oxygen Carrier, OXYGEN TRANSPORT' _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? MET A 20 ? THR A 4 MET A 19 1 ? 16 HELX_P HELX_P2 2 ASN A 22 ? HIS A 38 ? ASN A 21 HIS A 37 1 ? 17 HELX_P HELX_P3 3 PRO A 39 ? PRO A 44 ? PRO A 38 PRO A 43 5 ? 6 HELX_P HELX_P4 4 PHE A 45 ? GLY A 50 ? PHE A 44 GLY A 49 1 ? 6 HELX_P HELX_P5 5 THR A 53 ? GLN A 58 ? THR A 52 GLN A 57 1 ? 6 HELX_P HELX_P6 6 ASN A 60 ? ASP A 79 ? ASN A 59 ASP A 78 1 ? 20 HELX_P HELX_P7 7 ASP A 83 ? ARG A 101 ? ASP A 82 ARG A 100 1 ? 19 HELX_P HELX_P8 8 ARG A 104 ? HIS A 122 ? ARG A 103 HIS A 121 1 ? 19 HELX_P HELX_P9 9 GLY A 128 ? LEU A 151 ? GLY A 127 LEU A 150 1 ? 24 HELX_P HELX_P10 10 THR B 5 ? ASP B 21 ? THR B 4 ASP B 20 1 ? 17 HELX_P HELX_P11 11 ASN B 22 ? HIS B 38 ? ASN B 21 HIS B 37 1 ? 17 HELX_P HELX_P12 12 PRO B 39 ? PRO B 44 ? PRO B 38 PRO B 43 5 ? 6 HELX_P HELX_P13 13 PHE B 45 ? GLY B 50 ? PHE B 44 GLY B 49 1 ? 6 HELX_P HELX_P14 14 ASN B 60 ? ASP B 79 ? ASN B 59 ASP B 78 1 ? 20 HELX_P HELX_P15 15 ASP B 83 ? ASN B 100 ? ASP B 82 ASN B 99 1 ? 18 HELX_P HELX_P16 16 ARG B 104 ? HIS B 122 ? ARG B 103 HIS B 121 1 ? 19 HELX_P HELX_P17 17 GLY B 128 ? GLU B 150 ? GLY B 127 GLU B 149 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? E HEM . FE ? ? ? 1_555 F OXY . O2 ? ? B HEM 500 B OXY 501 1_555 ? ? ? ? ? ? ? 1.784 ? metalc2 metalc ? ? C HEM . FE ? ? ? 1_555 D OXY . O2 ? ? A HEM 500 A OXY 501 1_555 ? ? ? ? ? ? ? 1.789 ? metalc3 metalc ? ? B HIS 98 NE2 ? ? ? 1_555 E HEM . FE ? ? B HIS 97 B HEM 500 1_555 ? ? ? ? ? ? ? 2.149 ? metalc4 metalc ? ? A HIS 98 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 97 A HEM 500 1_555 ? ? ? ? ? ? ? 2.196 ? metalc5 metalc ? ? C HEM . FE ? ? ? 1_555 D OXY . O1 ? ? A HEM 500 A OXY 501 1_555 ? ? ? ? ? ? ? 2.425 ? metalc6 metalc ? ? E HEM . FE ? ? ? 1_555 F OXY . O1 ? ? B HEM 500 B OXY 501 1_555 ? ? ? ? ? ? ? 2.495 ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A THR 2 N ? ? A ACE 0 A THR 1 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE HEM A 500' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE OXY A 501' AC3 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE HEM B 500' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE OXY B 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 PRO A 44 ? PRO A 43 . ? 1_555 ? 2 AC1 19 PHE A 45 ? PHE A 44 . ? 1_555 ? 3 AC1 19 GLN A 66 ? GLN A 65 . ? 1_555 ? 4 AC1 19 VAL A 69 ? VAL A 68 . ? 1_555 ? 5 AC1 19 MET A 94 ? MET A 93 . ? 1_555 ? 6 AC1 19 LEU A 97 ? LEU A 96 . ? 1_555 ? 7 AC1 19 HIS A 98 ? HIS A 97 . ? 1_555 ? 8 AC1 19 ARG A 101 ? ARG A 100 . ? 1_555 ? 9 AC1 19 ILE A 103 ? ILE A 102 . ? 1_555 ? 10 AC1 19 ASP A 107 ? ASP A 106 . ? 1_555 ? 11 AC1 19 LEU A 108 ? LEU A 107 . ? 1_555 ? 12 AC1 19 TYR A 112 ? TYR A 111 . ? 1_555 ? 13 AC1 19 HOH G . ? HOH A 234 . ? 1_555 ? 14 AC1 19 HOH G . ? HOH A 235 . ? 1_555 ? 15 AC1 19 HOH G . ? HOH A 239 . ? 1_555 ? 16 AC1 19 HOH G . ? HOH A 241 . ? 1_555 ? 17 AC1 19 HOH G . ? HOH A 245 . ? 1_555 ? 18 AC1 19 OXY D . ? OXY A 501 . ? 1_555 ? 19 AC1 19 LYS B 93 ? LYS B 92 . ? 1_555 ? 20 AC2 3 TYR A 31 ? TYR A 30 . ? 1_555 ? 21 AC2 3 GLN A 66 ? GLN A 65 . ? 1_555 ? 22 AC2 3 HEM C . ? HEM A 500 . ? 1_555 ? 23 AC3 20 LYS A 93 ? LYS A 92 . ? 1_555 ? 24 AC3 20 LEU A 97 ? LEU A 96 . ? 1_555 ? 25 AC3 20 PRO B 44 ? PRO B 43 . ? 1_555 ? 26 AC3 20 PHE B 45 ? PHE B 44 . ? 1_555 ? 27 AC3 20 GLN B 66 ? GLN B 65 . ? 1_555 ? 28 AC3 20 VAL B 69 ? VAL B 68 . ? 1_555 ? 29 AC3 20 PHE B 70 ? PHE B 69 . ? 1_555 ? 30 AC3 20 MET B 94 ? MET B 93 . ? 1_555 ? 31 AC3 20 LEU B 97 ? LEU B 96 . ? 1_555 ? 32 AC3 20 HIS B 98 ? HIS B 97 . ? 1_555 ? 33 AC3 20 ARG B 101 ? ARG B 100 . ? 1_555 ? 34 AC3 20 ILE B 103 ? ILE B 102 . ? 1_555 ? 35 AC3 20 LEU B 108 ? LEU B 107 . ? 1_555 ? 36 AC3 20 TYR B 112 ? TYR B 111 . ? 1_555 ? 37 AC3 20 HOH H . ? HOH B 176 . ? 1_555 ? 38 AC3 20 HOH H . ? HOH B 184 . ? 1_555 ? 39 AC3 20 HOH H . ? HOH B 189 . ? 1_555 ? 40 AC3 20 HOH H . ? HOH B 195 . ? 1_555 ? 41 AC3 20 HOH H . ? HOH B 197 . ? 1_555 ? 42 AC3 20 OXY F . ? OXY B 501 . ? 1_555 ? 43 AC4 3 TYR B 31 ? TYR B 30 . ? 1_555 ? 44 AC4 3 GLN B 66 ? GLN B 65 . ? 1_555 ? 45 AC4 3 HEM E . ? HEM B 500 . ? 1_555 ? # _atom_sites.entry_id 3PI1 _atom_sites.fract_transf_matrix[1][1] 0.013171 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013171 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006530 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 THR 2 1 1 THR THR A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 GLN 8 7 7 GLN GLN A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 TRP 16 15 15 TRP TRP A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 MET 20 19 19 MET MET A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 MET 32 31 31 MET MET A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 HIS 38 37 37 HIS HIS A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 GLN 58 57 57 GLN GLN A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 PRO 61 60 60 PRO PRO A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 MET 63 62 62 MET MET A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 CYS 71 70 70 CYS CYS A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 MET 74 73 73 MET MET A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 HIS 80 79 79 HIS HIS A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 MET 86 85 85 MET MET A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 GLN 92 91 91 GLN GLN A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 MET 94 93 93 MET MET A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 HIS 98 97 97 HIS HIS A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 TYR 112 111 111 TYR TYR A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 HIS 117 116 116 HIS HIS A . n A 1 118 TYR 118 117 117 TYR TYR A . n A 1 119 MET 119 118 118 MET MET A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 HIS 122 121 121 HIS HIS A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 HIS 124 123 123 HIS HIS A . n A 1 125 MET 125 124 124 MET MET A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 TRP 133 132 132 TRP TRP A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 PHE 136 135 135 PHE PHE A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 CYS 141 140 140 CYS CYS A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 MET 148 147 147 MET MET A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 SER 152 151 151 SER SER A . n B 1 1 ACE 1 0 ? ? ? B . n B 1 2 THR 2 1 1 THR THR B . n B 1 3 THR 3 2 2 THR THR B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 THR 5 4 4 THR THR B . n B 1 6 ASN 6 5 5 ASN ASN B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 GLN 8 7 7 GLN GLN B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 ALA 10 9 9 ALA ALA B . n B 1 11 ALA 11 10 10 ALA ALA B . n B 1 12 ILE 12 11 11 ILE ILE B . n B 1 13 ARG 13 12 12 ARG ARG B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 TRP 16 15 15 TRP TRP B . n B 1 17 SER 17 16 16 SER SER B . n B 1 18 LYS 18 17 17 LYS LYS B . n B 1 19 PHE 19 18 18 PHE PHE B . n B 1 20 MET 20 19 19 MET MET B . n B 1 21 ASP 21 20 20 ASP ASP B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 SER 25 24 24 SER SER B . n B 1 26 ASN 26 25 25 ASN ASN B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 GLN 28 27 27 GLN GLN B . n B 1 29 GLY 29 28 28 GLY GLY B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 TYR 31 30 30 TYR TYR B . n B 1 32 MET 32 31 31 MET MET B . n B 1 33 ASP 33 32 32 ASP ASP B . n B 1 34 LEU 34 33 33 LEU LEU B . n B 1 35 PHE 35 34 34 PHE PHE B . n B 1 36 LYS 36 35 35 LYS LYS B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 HIS 38 37 37 HIS HIS B . n B 1 39 PRO 39 38 38 PRO PRO B . n B 1 40 GLU 40 39 39 GLU GLU B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 THR 43 42 42 THR THR B . n B 1 44 PRO 44 43 43 PRO PRO B . n B 1 45 PHE 45 44 44 PHE PHE B . n B 1 46 LYS 46 45 45 LYS LYS B . n B 1 47 SER 47 46 46 SER SER B . n B 1 48 LEU 48 47 47 LEU LEU B . n B 1 49 PHE 49 48 48 PHE PHE B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 GLY 51 50 50 GLY GLY B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 THR 53 52 52 THR THR B . n B 1 54 LEU 54 53 53 LEU LEU B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 GLN 56 55 55 GLN GLN B . n B 1 57 LEU 57 56 56 LEU LEU B . n B 1 58 GLN 58 57 57 GLN GLN B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 ASN 60 59 59 ASN ASN B . n B 1 61 PRO 61 60 60 PRO PRO B . n B 1 62 LYS 62 61 61 LYS LYS B . n B 1 63 MET 63 62 62 MET MET B . n B 1 64 LYS 64 63 63 LYS LYS B . n B 1 65 ALA 65 64 64 ALA ALA B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 LEU 68 67 67 LEU LEU B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 PHE 70 69 69 PHE PHE B . n B 1 71 CYS 71 70 70 CYS CYS B . n B 1 72 ASN 72 71 71 ASN ASN B . n B 1 73 GLY 73 72 72 GLY GLY B . n B 1 74 MET 74 73 73 MET MET B . n B 1 75 SER 75 74 74 SER SER B . n B 1 76 SER 76 75 75 SER SER B . n B 1 77 PHE 77 76 76 PHE PHE B . n B 1 78 VAL 78 77 77 VAL VAL B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 HIS 80 79 79 HIS HIS B . n B 1 81 LEU 81 80 80 LEU LEU B . n B 1 82 ASP 82 81 81 ASP ASP B . n B 1 83 ASP 83 82 82 ASP ASP B . n B 1 84 ASN 84 83 83 ASN ASN B . n B 1 85 ASP 85 84 84 ASP ASP B . n B 1 86 MET 86 85 85 MET MET B . n B 1 87 LEU 87 86 86 LEU LEU B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 VAL 89 88 88 VAL VAL B . n B 1 90 LEU 90 89 89 LEU LEU B . n B 1 91 ILE 91 90 90 ILE ILE B . n B 1 92 GLN 92 91 91 GLN GLN B . n B 1 93 LYS 93 92 92 LYS LYS B . n B 1 94 MET 94 93 93 MET MET B . n B 1 95 ALA 95 94 94 ALA ALA B . n B 1 96 LYS 96 95 95 LYS LYS B . n B 1 97 LEU 97 96 96 LEU LEU B . n B 1 98 HIS 98 97 97 HIS HIS B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ASN 100 99 99 ASN ASN B . n B 1 101 ARG 101 100 100 ARG ARG B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 ILE 103 102 102 ILE ILE B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 ALA 105 104 104 ALA ALA B . n B 1 106 SER 106 105 105 SER SER B . n B 1 107 ASP 107 106 106 ASP ASP B . n B 1 108 LEU 108 107 107 LEU LEU B . n B 1 109 ARG 109 108 108 ARG ARG B . n B 1 110 THR 110 109 109 THR THR B . n B 1 111 ALA 111 110 110 ALA ALA B . n B 1 112 TYR 112 111 111 TYR TYR B . n B 1 113 ASP 113 112 112 ASP ASP B . n B 1 114 ILE 114 113 113 ILE ILE B . n B 1 115 LEU 115 114 114 LEU LEU B . n B 1 116 ILE 116 115 115 ILE ILE B . n B 1 117 HIS 117 116 116 HIS HIS B . n B 1 118 TYR 118 117 117 TYR TYR B . n B 1 119 MET 119 118 118 MET MET B . n B 1 120 GLU 120 119 119 GLU GLU B . n B 1 121 ASP 121 120 120 ASP ASP B . n B 1 122 HIS 122 121 121 HIS HIS B . n B 1 123 ASN 123 122 122 ASN ASN B . n B 1 124 HIS 124 123 123 HIS HIS B . n B 1 125 MET 125 124 124 MET MET B . n B 1 126 VAL 126 125 125 VAL VAL B . n B 1 127 GLY 127 126 126 GLY GLY B . n B 1 128 GLY 128 127 127 GLY GLY B . n B 1 129 ALA 129 128 128 ALA ALA B . n B 1 130 LYS 130 129 129 LYS LYS B . n B 1 131 ASP 131 130 130 ASP ASP B . n B 1 132 ALA 132 131 131 ALA ALA B . n B 1 133 TRP 133 132 132 TRP TRP B . n B 1 134 GLU 134 133 133 GLU GLU B . n B 1 135 VAL 135 134 134 VAL VAL B . n B 1 136 PHE 136 135 135 PHE PHE B . n B 1 137 VAL 137 136 136 VAL VAL B . n B 1 138 GLY 138 137 137 GLY GLY B . n B 1 139 PHE 139 138 138 PHE PHE B . n B 1 140 ILE 140 139 139 ILE ILE B . n B 1 141 CYS 141 140 140 CYS CYS B . n B 1 142 LYS 142 141 141 LYS LYS B . n B 1 143 THR 143 142 142 THR THR B . n B 1 144 LEU 144 143 143 LEU LEU B . n B 1 145 GLY 145 144 144 GLY GLY B . n B 1 146 ASP 146 145 145 ASP ASP B . n B 1 147 TYR 147 146 146 TYR TYR B . n B 1 148 MET 148 147 147 MET MET B . n B 1 149 LYS 149 148 148 LYS LYS B . n B 1 150 GLU 150 149 149 GLU GLU B . n B 1 151 LEU 151 150 150 LEU LEU B . n B 1 152 SER 152 151 151 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM 1 500 500 HEM HEM A . D 3 OXY 1 501 501 OXY OXY A . E 2 HEM 1 500 500 HEM HEM B . F 3 OXY 1 501 501 OXY OXY B . G 4 HOH 1 153 153 HOH HOH A . G 4 HOH 2 154 154 HOH HOH A . G 4 HOH 3 155 155 HOH HOH A . G 4 HOH 4 156 156 HOH HOH A . G 4 HOH 5 157 157 HOH HOH A . G 4 HOH 6 158 158 HOH HOH A . G 4 HOH 7 159 159 HOH HOH A . G 4 HOH 8 160 160 HOH HOH A . G 4 HOH 9 161 161 HOH HOH A . G 4 HOH 10 162 162 HOH HOH A . G 4 HOH 11 163 163 HOH HOH A . G 4 HOH 12 164 164 HOH HOH A . G 4 HOH 13 165 165 HOH HOH A . G 4 HOH 14 166 166 HOH HOH A . G 4 HOH 15 167 167 HOH HOH A . G 4 HOH 16 168 168 HOH HOH A . G 4 HOH 17 169 169 HOH HOH A . G 4 HOH 18 170 170 HOH HOH A . G 4 HOH 19 171 171 HOH HOH A . G 4 HOH 20 172 172 HOH HOH A . G 4 HOH 21 173 173 HOH HOH A . G 4 HOH 22 174 174 HOH HOH A . G 4 HOH 23 175 175 HOH HOH A . G 4 HOH 24 176 176 HOH HOH A . G 4 HOH 25 177 177 HOH HOH A . G 4 HOH 26 178 178 HOH HOH A . G 4 HOH 27 179 179 HOH HOH A . G 4 HOH 28 180 180 HOH HOH A . G 4 HOH 29 181 181 HOH HOH A . G 4 HOH 30 182 182 HOH HOH A . G 4 HOH 31 183 183 HOH HOH A . G 4 HOH 32 184 184 HOH HOH A . G 4 HOH 33 185 185 HOH HOH A . G 4 HOH 34 186 186 HOH HOH A . G 4 HOH 35 187 187 HOH HOH A . G 4 HOH 36 188 188 HOH HOH A . G 4 HOH 37 189 189 HOH HOH A . G 4 HOH 38 190 190 HOH HOH A . G 4 HOH 39 191 191 HOH HOH A . G 4 HOH 40 192 192 HOH HOH A . G 4 HOH 41 193 193 HOH HOH A . G 4 HOH 42 194 194 HOH HOH A . G 4 HOH 43 195 195 HOH HOH A . G 4 HOH 44 196 196 HOH HOH A . G 4 HOH 45 197 197 HOH HOH A . G 4 HOH 46 198 198 HOH HOH A . G 4 HOH 47 199 199 HOH HOH A . G 4 HOH 48 200 200 HOH HOH A . G 4 HOH 49 201 201 HOH HOH A . G 4 HOH 50 202 202 HOH HOH A . G 4 HOH 51 203 203 HOH HOH A . G 4 HOH 52 204 204 HOH HOH A . G 4 HOH 53 205 205 HOH HOH A . G 4 HOH 54 206 206 HOH HOH A . G 4 HOH 55 207 207 HOH HOH A . G 4 HOH 56 208 208 HOH HOH A . G 4 HOH 57 209 209 HOH HOH A . G 4 HOH 58 210 210 HOH HOH A . G 4 HOH 59 211 211 HOH HOH A . G 4 HOH 60 212 212 HOH HOH A . G 4 HOH 61 213 213 HOH HOH A . G 4 HOH 62 214 214 HOH HOH A . G 4 HOH 63 215 215 HOH HOH A . G 4 HOH 64 216 216 HOH HOH A . G 4 HOH 65 217 217 HOH HOH A . G 4 HOH 66 218 218 HOH HOH A . G 4 HOH 67 219 219 HOH HOH A . G 4 HOH 68 220 220 HOH HOH A . G 4 HOH 69 221 221 HOH HOH A . G 4 HOH 70 222 222 HOH HOH A . G 4 HOH 71 223 223 HOH HOH A . G 4 HOH 72 224 224 HOH HOH A . G 4 HOH 73 225 225 HOH HOH A . G 4 HOH 74 226 226 HOH HOH A . G 4 HOH 75 227 227 HOH HOH A . G 4 HOH 76 228 228 HOH HOH A . G 4 HOH 77 229 229 HOH HOH A . G 4 HOH 78 230 230 HOH HOH A . G 4 HOH 79 231 231 HOH HOH A . G 4 HOH 80 232 232 HOH HOH A . G 4 HOH 81 233 233 HOH HOH A . G 4 HOH 82 234 234 HOH HOH A . G 4 HOH 83 235 235 HOH HOH A . G 4 HOH 84 236 236 HOH HOH A . G 4 HOH 85 237 237 HOH HOH A . G 4 HOH 86 238 238 HOH HOH A . G 4 HOH 87 239 239 HOH HOH A . G 4 HOH 88 240 240 HOH HOH A . G 4 HOH 89 241 241 HOH HOH A . G 4 HOH 90 242 242 HOH HOH A . G 4 HOH 91 243 243 HOH HOH A . G 4 HOH 92 244 244 HOH HOH A . G 4 HOH 93 245 245 HOH HOH A . G 4 HOH 94 246 246 HOH HOH A . G 4 HOH 95 247 247 HOH HOH A . G 4 HOH 96 248 248 HOH HOH A . G 4 HOH 97 249 249 HOH HOH A . G 4 HOH 98 250 250 HOH HOH A . G 4 HOH 99 251 251 HOH HOH A . G 4 HOH 100 252 252 HOH HOH A . G 4 HOH 101 253 253 HOH HOH A . G 4 HOH 102 254 201 HOH HOH A . G 4 HOH 103 255 255 HOH HOH A . G 4 HOH 104 256 256 HOH HOH A . G 4 HOH 105 257 257 HOH HOH A . G 4 HOH 106 258 258 HOH HOH A . G 4 HOH 107 259 259 HOH HOH A . G 4 HOH 108 260 260 HOH HOH A . G 4 HOH 109 261 230 HOH HOH A . G 4 HOH 110 262 262 HOH HOH A . G 4 HOH 111 263 263 HOH HOH A . G 4 HOH 112 264 264 HOH HOH A . G 4 HOH 113 265 265 HOH HOH A . G 4 HOH 114 267 267 HOH HOH A . G 4 HOH 115 268 268 HOH HOH A . G 4 HOH 116 269 269 HOH HOH A . G 4 HOH 117 270 270 HOH HOH A . G 4 HOH 118 271 271 HOH HOH A . G 4 HOH 119 272 272 HOH HOH A . G 4 HOH 120 273 273 HOH HOH A . G 4 HOH 121 274 274 HOH HOH A . G 4 HOH 122 275 275 HOH HOH A . G 4 HOH 123 276 276 HOH HOH A . G 4 HOH 124 277 277 HOH HOH A . G 4 HOH 125 278 278 HOH HOH A . G 4 HOH 126 279 279 HOH HOH A . G 4 HOH 127 280 280 HOH HOH A . G 4 HOH 128 281 281 HOH HOH A . G 4 HOH 129 282 282 HOH HOH A . G 4 HOH 130 283 283 HOH HOH A . G 4 HOH 131 284 284 HOH HOH A . G 4 HOH 132 285 285 HOH HOH A . H 4 HOH 1 153 153 HOH HOH B . H 4 HOH 2 154 154 HOH HOH B . H 4 HOH 3 155 155 HOH HOH B . H 4 HOH 4 156 156 HOH HOH B . H 4 HOH 5 157 157 HOH HOH B . H 4 HOH 6 158 158 HOH HOH B . H 4 HOH 7 159 159 HOH HOH B . H 4 HOH 8 160 160 HOH HOH B . H 4 HOH 9 161 161 HOH HOH B . H 4 HOH 10 162 162 HOH HOH B . H 4 HOH 11 163 163 HOH HOH B . H 4 HOH 12 164 164 HOH HOH B . H 4 HOH 13 165 165 HOH HOH B . H 4 HOH 14 166 166 HOH HOH B . H 4 HOH 15 167 167 HOH HOH B . H 4 HOH 16 168 168 HOH HOH B . H 4 HOH 17 169 169 HOH HOH B . H 4 HOH 18 170 170 HOH HOH B . H 4 HOH 19 171 171 HOH HOH B . H 4 HOH 20 172 172 HOH HOH B . H 4 HOH 21 173 173 HOH HOH B . H 4 HOH 22 174 174 HOH HOH B . H 4 HOH 23 175 175 HOH HOH B . H 4 HOH 24 176 176 HOH HOH B . H 4 HOH 25 177 177 HOH HOH B . H 4 HOH 26 178 178 HOH HOH B . H 4 HOH 27 179 179 HOH HOH B . H 4 HOH 28 180 180 HOH HOH B . H 4 HOH 29 181 181 HOH HOH B . H 4 HOH 30 182 182 HOH HOH B . H 4 HOH 31 183 183 HOH HOH B . H 4 HOH 32 184 184 HOH HOH B . H 4 HOH 33 185 185 HOH HOH B . H 4 HOH 34 186 186 HOH HOH B . H 4 HOH 35 187 187 HOH HOH B . H 4 HOH 36 188 188 HOH HOH B . H 4 HOH 37 189 189 HOH HOH B . H 4 HOH 38 190 190 HOH HOH B . H 4 HOH 39 191 191 HOH HOH B . H 4 HOH 40 192 192 HOH HOH B . H 4 HOH 41 193 193 HOH HOH B . H 4 HOH 42 194 194 HOH HOH B . H 4 HOH 43 195 195 HOH HOH B . H 4 HOH 44 196 196 HOH HOH B . H 4 HOH 45 197 197 HOH HOH B . H 4 HOH 46 198 198 HOH HOH B . H 4 HOH 47 199 199 HOH HOH B . H 4 HOH 48 200 200 HOH HOH B . H 4 HOH 49 202 202 HOH HOH B . H 4 HOH 50 203 203 HOH HOH B . H 4 HOH 51 204 204 HOH HOH B . H 4 HOH 52 205 205 HOH HOH B . H 4 HOH 53 206 206 HOH HOH B . H 4 HOH 54 207 207 HOH HOH B . H 4 HOH 55 208 208 HOH HOH B . H 4 HOH 56 209 209 HOH HOH B . H 4 HOH 57 210 210 HOH HOH B . H 4 HOH 58 211 211 HOH HOH B . H 4 HOH 59 212 212 HOH HOH B . H 4 HOH 60 213 213 HOH HOH B . H 4 HOH 61 214 214 HOH HOH B . H 4 HOH 62 215 215 HOH HOH B . H 4 HOH 63 216 216 HOH HOH B . H 4 HOH 64 217 217 HOH HOH B . H 4 HOH 65 218 218 HOH HOH B . H 4 HOH 66 219 219 HOH HOH B . H 4 HOH 67 220 220 HOH HOH B . H 4 HOH 68 221 221 HOH HOH B . H 4 HOH 69 222 222 HOH HOH B . H 4 HOH 70 223 223 HOH HOH B . H 4 HOH 71 224 224 HOH HOH B . H 4 HOH 72 226 226 HOH HOH B . H 4 HOH 73 227 227 HOH HOH B . H 4 HOH 74 228 228 HOH HOH B . H 4 HOH 75 229 229 HOH HOH B . H 4 HOH 76 231 231 HOH HOH B . H 4 HOH 77 232 232 HOH HOH B . H 4 HOH 78 233 233 HOH HOH B . H 4 HOH 79 234 234 HOH HOH B . H 4 HOH 80 235 235 HOH HOH B . H 4 HOH 81 236 236 HOH HOH B . H 4 HOH 82 237 237 HOH HOH B . H 4 HOH 83 238 238 HOH HOH B . H 4 HOH 84 239 239 HOH HOH B . H 4 HOH 85 240 240 HOH HOH B . H 4 HOH 86 241 241 HOH HOH B . H 4 HOH 87 242 242 HOH HOH B . H 4 HOH 88 243 243 HOH HOH B . H 4 HOH 89 244 244 HOH HOH B . H 4 HOH 90 254 254 HOH HOH B . H 4 HOH 91 261 261 HOH HOH B . H 4 HOH 92 266 266 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H 3 1,3,4,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5120 ? 1 MORE -58 ? 1 'SSA (A^2)' 13290 ? 2 'ABSA (A^2)' 11470 ? 2 MORE -125 ? 2 'SSA (A^2)' 25350 ? 3 'ABSA (A^2)' 26880 ? 3 MORE -245 ? 3 'SSA (A^2)' 46770 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_556 -y,-x,-z+1 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 153.1340000000 3 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 153.1340000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NA ? E HEM . ? B HEM 500 ? 1_555 82.9 ? 2 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NB ? E HEM . ? B HEM 500 ? 1_555 88.2 ? 3 NA ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NB ? E HEM . ? B HEM 500 ? 1_555 90.6 ? 4 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NC ? E HEM . ? B HEM 500 ? 1_555 93.6 ? 5 NA ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NC ? E HEM . ? B HEM 500 ? 1_555 174.2 ? 6 NB ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NC ? E HEM . ? B HEM 500 ? 1_555 84.6 ? 7 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 ND ? E HEM . ? B HEM 500 ? 1_555 90.7 ? 8 NA ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 ND ? E HEM . ? B HEM 500 ? 1_555 90.6 ? 9 NB ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 ND ? E HEM . ? B HEM 500 ? 1_555 178.2 ? 10 NC ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 ND ? E HEM . ? B HEM 500 ? 1_555 94.1 ? 11 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 176.5 ? 12 NA ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 94.2 ? 13 NB ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 90.0 ? 14 NC ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 89.1 ? 15 ND ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 91.2 ? 16 O2 ? F OXY . ? B OXY 501 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 26.5 ? 17 NA ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 103.1 ? 18 NB ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 71.3 ? 19 NC ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 72.3 ? 20 ND ? E HEM . ? B HEM 500 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 107.2 ? 21 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 FE ? E HEM . ? B HEM 500 ? 1_555 O1 ? F OXY . ? B OXY 501 ? 1_555 154.4 ? 22 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NA ? C HEM . ? A HEM 500 ? 1_555 82.5 ? 23 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NB ? C HEM . ? A HEM 500 ? 1_555 87.9 ? 24 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NB ? C HEM . ? A HEM 500 ? 1_555 89.6 ? 25 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 96.1 ? 26 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 178.5 ? 27 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 90.9 ? 28 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 92.7 ? 29 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 87.3 ? 30 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 176.8 ? 31 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 92.2 ? 32 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 168.8 ? 33 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 87.2 ? 34 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 87.9 ? 35 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 94.3 ? 36 ND ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 90.9 ? 37 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 28.5 ? 38 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 102.2 ? 39 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 67.8 ? 40 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 76.7 ? 41 ND ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 113.9 ? 42 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 153.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-09 2 'Structure model' 1 1 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.contact_author' 3 2 'Structure model' '_software.contact_author_email' 4 2 'Structure model' '_software.location' 5 2 'Structure model' '_software.name' 6 2 'Structure model' '_software.type' 7 2 'Structure model' '_software.version' 8 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_phasing_MR.entry_id 3PI1 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 19.510 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 19.510 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.6.1_357 ? ? ? ? refinement ? ? ? 2 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 8 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ACE _pdbx_validate_rmsd_angle.auth_seq_id_1 0 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ACE _pdbx_validate_rmsd_angle.auth_seq_id_2 0 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 THR _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.56 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -10.14 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 69.93 _pdbx_validate_torsion.psi -1.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 103 ? NE ? A ARG 104 NE 2 1 Y 1 A ARG 103 ? CZ ? A ARG 104 CZ 3 1 Y 1 A ARG 103 ? NH1 ? A ARG 104 NH1 4 1 Y 1 A ARG 103 ? NH2 ? A ARG 104 NH2 5 1 Y 1 A LYS 141 ? CD ? A LYS 142 CD 6 1 Y 1 A LYS 141 ? CE ? A LYS 142 CE 7 1 Y 1 A LYS 141 ? NZ ? A LYS 142 NZ 8 1 Y 1 A SER 151 ? OG ? A SER 152 OG 9 1 Y 1 B LYS 45 ? CG ? B LYS 46 CG 10 1 Y 1 B LYS 45 ? CD ? B LYS 46 CD 11 1 Y 1 B LYS 45 ? CE ? B LYS 46 CE 12 1 Y 1 B LYS 45 ? NZ ? B LYS 46 NZ 13 1 Y 1 B ARG 103 ? CD ? B ARG 104 CD 14 1 Y 1 B ARG 103 ? NE ? B ARG 104 NE 15 1 Y 1 B ARG 103 ? CZ ? B ARG 104 CZ 16 1 Y 1 B ARG 103 ? NH1 ? B ARG 104 NH1 17 1 Y 1 B ARG 103 ? NH2 ? B ARG 104 NH2 18 1 Y 1 B ARG 108 ? CD ? B ARG 109 CD 19 1 Y 1 B ARG 108 ? NE ? B ARG 109 NE 20 1 Y 1 B ARG 108 ? CZ ? B ARG 109 CZ 21 1 Y 1 B ARG 108 ? NH1 ? B ARG 109 NH1 22 1 Y 1 B ARG 108 ? NH2 ? B ARG 109 NH2 23 1 Y 1 B LYS 141 ? CD ? B LYS 142 CD 24 1 Y 1 B LYS 141 ? CE ? B LYS 142 CE 25 1 Y 1 B LYS 141 ? NZ ? B LYS 142 NZ 26 1 Y 1 B LYS 148 ? CD ? B LYS 149 CD 27 1 Y 1 B LYS 148 ? CE ? B LYS 149 CE 28 1 Y 1 B LYS 148 ? NZ ? B LYS 149 NZ 29 1 Y 1 B SER 151 ? OG ? B SER 152 OG # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id ACE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id ACE _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _cell_measurement.reflns_used 126200 _cell_measurement.entry_id 3PI1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'OXYGEN MOLECULE' OXY 4 water HOH #