data_3PIR # _entry.id 3PIR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PIR pdb_00003pir 10.2210/pdb3pir/pdb RCSB RCSB062421 ? ? WWPDB D_1000062421 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1X1S . unspecified PDB 3KKP . unspecified PDB 3KKO . unspecified PDB 3KKM . unspecified PDB 3PIT . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PIR _pdbx_database_status.recvd_initial_deposition_date 2010-11-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Muraoka, S.' 1 'Matsumoto, K.' 2 'Shima, F.' 3 'Hu, L.' 4 'Ijiri, Y.' 5 'Hirai, R.' 6 'Liao, J.' 7 'Kataoka, T.' 8 # _citation.id primary _citation.title 'Crystal structure of M-RasD41E in complex with GppNHp (type 1)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Muraoka, S.' 1 ? primary 'Matsumoto, K.' 2 ? primary 'Shima, F.' 3 ? primary 'Hu, L.' 4 ? primary 'Ijiri, Y.' 5 ? primary 'Hirai, R.' 6 ? primary 'Liao, J.' 7 ? primary 'Kataoka, T.' 8 ? # _cell.entry_id 3PIR _cell.length_a 109.421 _cell.length_b 109.421 _cell.length_c 68.211 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PIR _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein M-Ras' 20850.758 1 ? D41E 'G domain, UNP residues 1-178' ? 2 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Muscle and microspikes Ras, Ras-related protein R-Ras3, X-Ras' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET SAKDPPLNVDKTFHDLVRVIRQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET SAKDPPLNVDKTFHDLVRVIRQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 ALA n 1 8 THR n 1 9 SER n 1 10 ALA n 1 11 VAL n 1 12 PRO n 1 13 SER n 1 14 GLU n 1 15 ASN n 1 16 LEU n 1 17 PRO n 1 18 THR n 1 19 TYR n 1 20 LYS n 1 21 LEU n 1 22 VAL n 1 23 VAL n 1 24 VAL n 1 25 GLY n 1 26 ASP n 1 27 GLY n 1 28 GLY n 1 29 VAL n 1 30 GLY n 1 31 LYS n 1 32 SER n 1 33 ALA n 1 34 LEU n 1 35 THR n 1 36 ILE n 1 37 GLN n 1 38 PHE n 1 39 PHE n 1 40 GLN n 1 41 LYS n 1 42 ILE n 1 43 PHE n 1 44 VAL n 1 45 PRO n 1 46 GLU n 1 47 TYR n 1 48 ASP n 1 49 PRO n 1 50 THR n 1 51 ILE n 1 52 GLU n 1 53 ASP n 1 54 SER n 1 55 TYR n 1 56 LEU n 1 57 LYS n 1 58 HIS n 1 59 THR n 1 60 GLU n 1 61 ILE n 1 62 ASP n 1 63 ASN n 1 64 GLN n 1 65 TRP n 1 66 ALA n 1 67 ILE n 1 68 LEU n 1 69 ASP n 1 70 VAL n 1 71 LEU n 1 72 ASP n 1 73 THR n 1 74 ALA n 1 75 GLY n 1 76 GLN n 1 77 GLU n 1 78 GLU n 1 79 PHE n 1 80 SER n 1 81 ALA n 1 82 MET n 1 83 ARG n 1 84 GLU n 1 85 GLN n 1 86 TYR n 1 87 MET n 1 88 ARG n 1 89 THR n 1 90 GLY n 1 91 ASP n 1 92 GLY n 1 93 PHE n 1 94 LEU n 1 95 ILE n 1 96 VAL n 1 97 TYR n 1 98 SER n 1 99 VAL n 1 100 THR n 1 101 ASP n 1 102 LYS n 1 103 ALA n 1 104 SER n 1 105 PHE n 1 106 GLU n 1 107 HIS n 1 108 VAL n 1 109 ASP n 1 110 ARG n 1 111 PHE n 1 112 HIS n 1 113 GLN n 1 114 LEU n 1 115 ILE n 1 116 LEU n 1 117 ARG n 1 118 VAL n 1 119 LYS n 1 120 ASP n 1 121 ARG n 1 122 GLU n 1 123 SER n 1 124 PHE n 1 125 PRO n 1 126 MET n 1 127 ILE n 1 128 LEU n 1 129 VAL n 1 130 ALA n 1 131 ASN n 1 132 LYS n 1 133 VAL n 1 134 ASP n 1 135 LEU n 1 136 MET n 1 137 HIS n 1 138 LEU n 1 139 ARG n 1 140 LYS n 1 141 VAL n 1 142 THR n 1 143 ARG n 1 144 ASP n 1 145 GLN n 1 146 GLY n 1 147 LYS n 1 148 GLU n 1 149 MET n 1 150 ALA n 1 151 THR n 1 152 LYS n 1 153 TYR n 1 154 ASN n 1 155 ILE n 1 156 PRO n 1 157 TYR n 1 158 ILE n 1 159 GLU n 1 160 THR n 1 161 SER n 1 162 ALA n 1 163 LYS n 1 164 ASP n 1 165 PRO n 1 166 PRO n 1 167 LEU n 1 168 ASN n 1 169 VAL n 1 170 ASP n 1 171 LYS n 1 172 THR n 1 173 PHE n 1 174 HIS n 1 175 ASP n 1 176 LEU n 1 177 VAL n 1 178 ARG n 1 179 VAL n 1 180 ILE n 1 181 ARG n 1 182 GLN n 1 183 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Mras, Xras' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASM_MOUSE _struct_ref.pdbx_db_accession O08989 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP PLNVDKTFHDLVRVIRQQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PIR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O08989 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 178 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PIR GLY A 1 ? UNP O08989 ? ? 'expression tag' -4 1 1 3PIR PRO A 2 ? UNP O08989 ? ? 'expression tag' -3 2 1 3PIR LEU A 3 ? UNP O08989 ? ? 'expression tag' -2 3 1 3PIR GLY A 4 ? UNP O08989 ? ? 'expression tag' -1 4 1 3PIR SER A 5 ? UNP O08989 ? ? 'expression tag' 0 5 1 3PIR GLU A 46 ? UNP O08989 ASP 41 'engineered mutation' 41 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PIR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, 0.2M magnesium chloride, 20% PEG 8000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-07-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3PIR _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 32.1 _reflns.d_resolution_high 2.75 _reflns.number_obs 6653 _reflns.number_all 6653 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 66.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.293 _reflns_shell.pdbx_Rsym_value 0.293 _reflns_shell.meanI_over_sigI_obs 19.3 _reflns_shell.pdbx_redundancy 21.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 634 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3PIR _refine.ls_number_reflns_obs 6335 _refine.ls_number_reflns_all 6335 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.09 _refine.ls_d_res_high 2.75 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.21386 _refine.ls_R_factor_all 0.21386 _refine.ls_R_factor_R_work 0.21023 _refine.ls_R_factor_R_free 0.28682 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 313 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.916 _refine.correlation_coeff_Fo_to_Fc_free 0.859 _refine.B_iso_mean 26.782 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.pdbx_starting_model 'PDB ENTRY 1X1S' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.380 _refine.overall_SU_ML 0.255 _refine.overall_SU_B 12.229 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1370 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 1422 _refine_hist.d_res_high 2.75 _refine_hist.d_res_low 32.09 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1433 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.501 1.989 ? 1947 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.096 5.000 ? 167 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.601 24.203 ? 69 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.012 15.000 ? 253 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.218 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 216 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1068 'X-RAY DIFFRACTION' ? r_mcbond_it 0.767 1.500 ? 839 'X-RAY DIFFRACTION' ? r_mcangle_it 1.470 2.000 ? 1370 'X-RAY DIFFRACTION' ? r_scbond_it 1.991 3.000 ? 594 'X-RAY DIFFRACTION' ? r_scangle_it 3.382 4.500 ? 577 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.750 _refine_ls_shell.d_res_low 2.821 _refine_ls_shell.number_reflns_R_work 454 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.353 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 454 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3PIR _struct.title 'Crystal structure of M-RasD41E in complex with GppNHp (type 1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PIR _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'GTP-binding, GTPase, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 30 ? LYS A 41 ? GLY A 25 LYS A 36 1 ? 12 HELX_P HELX_P2 2 SER A 80 ? GLY A 90 ? SER A 75 GLY A 85 1 ? 11 HELX_P HELX_P3 3 ASP A 101 ? HIS A 107 ? ASP A 96 HIS A 102 1 ? 7 HELX_P HELX_P4 4 HIS A 107 ? LYS A 119 ? HIS A 102 LYS A 114 1 ? 13 HELX_P HELX_P5 5 LEU A 135 ? ARG A 139 ? LEU A 130 ARG A 134 5 ? 5 HELX_P HELX_P6 6 THR A 142 ? TYR A 153 ? THR A 137 TYR A 148 1 ? 12 HELX_P HELX_P7 7 ASN A 168 ? GLN A 182 ? ASN A 163 GLN A 177 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 32 OG ? ? ? 1_555 C MG . MG ? ? A SER 27 A MG 180 1_555 ? ? ? ? ? ? ? 1.894 ? ? metalc2 metalc ? ? B GNP . O2G ? ? ? 1_555 C MG . MG ? ? A GNP 179 A MG 180 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc3 metalc ? ? B GNP . O2B ? ? ? 1_555 C MG . MG ? ? A GNP 179 A MG 180 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 180 A HOH 1001 1_555 ? ? ? ? ? ? ? 1.914 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 180 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.102 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 164 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 165 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.18 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 53 ? ILE A 61 ? ASP A 48 ILE A 56 A 2 GLN A 64 ? ASP A 72 ? GLN A 59 ASP A 67 A 3 THR A 18 ? VAL A 24 ? THR A 13 VAL A 19 A 4 GLY A 92 ? SER A 98 ? GLY A 87 SER A 93 A 5 MET A 126 ? ASN A 131 ? MET A 121 ASN A 126 A 6 TYR A 157 ? THR A 160 ? TYR A 152 THR A 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 53 ? N ASP A 48 O ASP A 72 ? O ASP A 67 A 2 3 O ILE A 67 ? O ILE A 62 N TYR A 19 ? N TYR A 14 A 3 4 N VAL A 22 ? N VAL A 17 O LEU A 94 ? O LEU A 89 A 4 5 N ILE A 95 ? N ILE A 90 O VAL A 129 ? O VAL A 124 A 5 6 N ALA A 130 ? N ALA A 125 O ILE A 158 ? O ILE A 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GNP 179 ? 20 'BINDING SITE FOR RESIDUE GNP A 179' AC2 Software A MG 180 ? 4 'BINDING SITE FOR RESIDUE MG A 180' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 GLY A 27 ? GLY A 22 . ? 1_555 ? 2 AC1 20 GLY A 28 ? GLY A 23 . ? 1_555 ? 3 AC1 20 VAL A 29 ? VAL A 24 . ? 1_555 ? 4 AC1 20 GLY A 30 ? GLY A 25 . ? 1_555 ? 5 AC1 20 LYS A 31 ? LYS A 26 . ? 1_555 ? 6 AC1 20 SER A 32 ? SER A 27 . ? 1_555 ? 7 AC1 20 ALA A 33 ? ALA A 28 . ? 1_555 ? 8 AC1 20 PHE A 43 ? PHE A 38 . ? 1_555 ? 9 AC1 20 ASN A 131 ? ASN A 126 . ? 1_555 ? 10 AC1 20 LYS A 132 ? LYS A 127 . ? 1_555 ? 11 AC1 20 ASP A 134 ? ASP A 129 . ? 1_555 ? 12 AC1 20 LEU A 135 ? LEU A 130 . ? 1_555 ? 13 AC1 20 SER A 161 ? SER A 156 . ? 1_555 ? 14 AC1 20 ALA A 162 ? ALA A 157 . ? 1_555 ? 15 AC1 20 LYS A 163 ? LYS A 158 . ? 1_555 ? 16 AC1 20 MG C . ? MG A 180 . ? 1_555 ? 17 AC1 20 HOH D . ? HOH A 1001 . ? 1_555 ? 18 AC1 20 HOH D . ? HOH A 1002 . ? 1_555 ? 19 AC1 20 HOH D . ? HOH A 1003 . ? 1_555 ? 20 AC1 20 HOH D . ? HOH A 1014 . ? 1_555 ? 21 AC2 4 SER A 32 ? SER A 27 . ? 1_555 ? 22 AC2 4 GNP B . ? GNP A 179 . ? 1_555 ? 23 AC2 4 HOH D . ? HOH A 1001 . ? 1_555 ? 24 AC2 4 HOH D . ? HOH A 1002 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PIR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PIR _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0.005276 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010553 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014660 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 MET 6 1 ? ? ? A . n A 1 7 ALA 7 2 ? ? ? A . n A 1 8 THR 8 3 ? ? ? A . n A 1 9 SER 9 4 ? ? ? A . n A 1 10 ALA 10 5 ? ? ? A . n A 1 11 VAL 11 6 ? ? ? A . n A 1 12 PRO 12 7 ? ? ? A . n A 1 13 SER 13 8 ? ? ? A . n A 1 14 GLU 14 9 ? ? ? A . n A 1 15 ASN 15 10 ? ? ? A . n A 1 16 LEU 16 11 11 LEU LEU A . n A 1 17 PRO 17 12 12 PRO PRO A . n A 1 18 THR 18 13 13 THR THR A . n A 1 19 TYR 19 14 14 TYR TYR A . n A 1 20 LYS 20 15 15 LYS LYS A . n A 1 21 LEU 21 16 16 LEU LEU A . n A 1 22 VAL 22 17 17 VAL VAL A . n A 1 23 VAL 23 18 18 VAL VAL A . n A 1 24 VAL 24 19 19 VAL VAL A . n A 1 25 GLY 25 20 20 GLY GLY A . n A 1 26 ASP 26 21 21 ASP ASP A . n A 1 27 GLY 27 22 22 GLY GLY A . n A 1 28 GLY 28 23 23 GLY GLY A . n A 1 29 VAL 29 24 24 VAL VAL A . n A 1 30 GLY 30 25 25 GLY GLY A . n A 1 31 LYS 31 26 26 LYS LYS A . n A 1 32 SER 32 27 27 SER SER A . n A 1 33 ALA 33 28 28 ALA ALA A . n A 1 34 LEU 34 29 29 LEU LEU A . n A 1 35 THR 35 30 30 THR THR A . n A 1 36 ILE 36 31 31 ILE ILE A . n A 1 37 GLN 37 32 32 GLN GLN A . n A 1 38 PHE 38 33 33 PHE PHE A . n A 1 39 PHE 39 34 34 PHE PHE A . n A 1 40 GLN 40 35 35 GLN GLN A . n A 1 41 LYS 41 36 36 LYS LYS A . n A 1 42 ILE 42 37 37 ILE ILE A . n A 1 43 PHE 43 38 38 PHE PHE A . n A 1 44 VAL 44 39 39 VAL VAL A . n A 1 45 PRO 45 40 40 PRO PRO A . n A 1 46 GLU 46 41 41 GLU GLU A . n A 1 47 TYR 47 42 42 TYR TYR A . n A 1 48 ASP 48 43 43 ASP ASP A . n A 1 49 PRO 49 44 44 PRO PRO A . n A 1 50 THR 50 45 45 THR THR A . n A 1 51 ILE 51 46 46 ILE ILE A . n A 1 52 GLU 52 47 47 GLU GLU A . n A 1 53 ASP 53 48 48 ASP ASP A . n A 1 54 SER 54 49 49 SER SER A . n A 1 55 TYR 55 50 50 TYR TYR A . n A 1 56 LEU 56 51 51 LEU LEU A . n A 1 57 LYS 57 52 52 LYS LYS A . n A 1 58 HIS 58 53 53 HIS HIS A . n A 1 59 THR 59 54 54 THR THR A . n A 1 60 GLU 60 55 55 GLU GLU A . n A 1 61 ILE 61 56 56 ILE ILE A . n A 1 62 ASP 62 57 57 ASP ASP A . n A 1 63 ASN 63 58 58 ASN ASN A . n A 1 64 GLN 64 59 59 GLN GLN A . n A 1 65 TRP 65 60 60 TRP TRP A . n A 1 66 ALA 66 61 61 ALA ALA A . n A 1 67 ILE 67 62 62 ILE ILE A . n A 1 68 LEU 68 63 63 LEU LEU A . n A 1 69 ASP 69 64 64 ASP ASP A . n A 1 70 VAL 70 65 65 VAL VAL A . n A 1 71 LEU 71 66 66 LEU LEU A . n A 1 72 ASP 72 67 67 ASP ASP A . n A 1 73 THR 73 68 68 THR THR A . n A 1 74 ALA 74 69 69 ALA ALA A . n A 1 75 GLY 75 70 70 GLY GLY A . n A 1 76 GLN 76 71 71 GLN GLN A . n A 1 77 GLU 77 72 72 GLU GLU A . n A 1 78 GLU 78 73 73 GLU GLU A . n A 1 79 PHE 79 74 74 PHE PHE A . n A 1 80 SER 80 75 75 SER SER A . n A 1 81 ALA 81 76 76 ALA ALA A . n A 1 82 MET 82 77 77 MET MET A . n A 1 83 ARG 83 78 78 ARG ARG A . n A 1 84 GLU 84 79 79 GLU GLU A . n A 1 85 GLN 85 80 80 GLN GLN A . n A 1 86 TYR 86 81 81 TYR TYR A . n A 1 87 MET 87 82 82 MET MET A . n A 1 88 ARG 88 83 83 ARG ARG A . n A 1 89 THR 89 84 84 THR THR A . n A 1 90 GLY 90 85 85 GLY GLY A . n A 1 91 ASP 91 86 86 ASP ASP A . n A 1 92 GLY 92 87 87 GLY GLY A . n A 1 93 PHE 93 88 88 PHE PHE A . n A 1 94 LEU 94 89 89 LEU LEU A . n A 1 95 ILE 95 90 90 ILE ILE A . n A 1 96 VAL 96 91 91 VAL VAL A . n A 1 97 TYR 97 92 92 TYR TYR A . n A 1 98 SER 98 93 93 SER SER A . n A 1 99 VAL 99 94 94 VAL VAL A . n A 1 100 THR 100 95 95 THR THR A . n A 1 101 ASP 101 96 96 ASP ASP A . n A 1 102 LYS 102 97 97 LYS LYS A . n A 1 103 ALA 103 98 98 ALA ALA A . n A 1 104 SER 104 99 99 SER SER A . n A 1 105 PHE 105 100 100 PHE PHE A . n A 1 106 GLU 106 101 101 GLU GLU A . n A 1 107 HIS 107 102 102 HIS HIS A . n A 1 108 VAL 108 103 103 VAL VAL A . n A 1 109 ASP 109 104 104 ASP ASP A . n A 1 110 ARG 110 105 105 ARG ARG A . n A 1 111 PHE 111 106 106 PHE PHE A . n A 1 112 HIS 112 107 107 HIS HIS A . n A 1 113 GLN 113 108 108 GLN GLN A . n A 1 114 LEU 114 109 109 LEU LEU A . n A 1 115 ILE 115 110 110 ILE ILE A . n A 1 116 LEU 116 111 111 LEU LEU A . n A 1 117 ARG 117 112 112 ARG ARG A . n A 1 118 VAL 118 113 113 VAL VAL A . n A 1 119 LYS 119 114 114 LYS LYS A . n A 1 120 ASP 120 115 115 ASP ASP A . n A 1 121 ARG 121 116 116 ARG ARG A . n A 1 122 GLU 122 117 117 GLU GLU A . n A 1 123 SER 123 118 118 SER SER A . n A 1 124 PHE 124 119 119 PHE PHE A . n A 1 125 PRO 125 120 120 PRO PRO A . n A 1 126 MET 126 121 121 MET MET A . n A 1 127 ILE 127 122 122 ILE ILE A . n A 1 128 LEU 128 123 123 LEU LEU A . n A 1 129 VAL 129 124 124 VAL VAL A . n A 1 130 ALA 130 125 125 ALA ALA A . n A 1 131 ASN 131 126 126 ASN ASN A . n A 1 132 LYS 132 127 127 LYS LYS A . n A 1 133 VAL 133 128 128 VAL VAL A . n A 1 134 ASP 134 129 129 ASP ASP A . n A 1 135 LEU 135 130 130 LEU LEU A . n A 1 136 MET 136 131 131 MET MET A . n A 1 137 HIS 137 132 132 HIS HIS A . n A 1 138 LEU 138 133 133 LEU LEU A . n A 1 139 ARG 139 134 134 ARG ARG A . n A 1 140 LYS 140 135 135 LYS LYS A . n A 1 141 VAL 141 136 136 VAL VAL A . n A 1 142 THR 142 137 137 THR THR A . n A 1 143 ARG 143 138 138 ARG ARG A . n A 1 144 ASP 144 139 139 ASP ASP A . n A 1 145 GLN 145 140 140 GLN GLN A . n A 1 146 GLY 146 141 141 GLY GLY A . n A 1 147 LYS 147 142 142 LYS LYS A . n A 1 148 GLU 148 143 143 GLU GLU A . n A 1 149 MET 149 144 144 MET MET A . n A 1 150 ALA 150 145 145 ALA ALA A . n A 1 151 THR 151 146 146 THR THR A . n A 1 152 LYS 152 147 147 LYS LYS A . n A 1 153 TYR 153 148 148 TYR TYR A . n A 1 154 ASN 154 149 149 ASN ASN A . n A 1 155 ILE 155 150 150 ILE ILE A . n A 1 156 PRO 156 151 151 PRO PRO A . n A 1 157 TYR 157 152 152 TYR TYR A . n A 1 158 ILE 158 153 153 ILE ILE A . n A 1 159 GLU 159 154 154 GLU GLU A . n A 1 160 THR 160 155 155 THR THR A . n A 1 161 SER 161 156 156 SER SER A . n A 1 162 ALA 162 157 157 ALA ALA A . n A 1 163 LYS 163 158 158 LYS LYS A . n A 1 164 ASP 164 159 159 ASP ASP A . n A 1 165 PRO 165 160 160 PRO PRO A . n A 1 166 PRO 166 161 161 PRO PRO A . n A 1 167 LEU 167 162 162 LEU LEU A . n A 1 168 ASN 168 163 163 ASN ASN A . n A 1 169 VAL 169 164 164 VAL VAL A . n A 1 170 ASP 170 165 165 ASP ASP A . n A 1 171 LYS 171 166 166 LYS LYS A . n A 1 172 THR 172 167 167 THR THR A . n A 1 173 PHE 173 168 168 PHE PHE A . n A 1 174 HIS 174 169 169 HIS HIS A . n A 1 175 ASP 175 170 170 ASP ASP A . n A 1 176 LEU 176 171 171 LEU LEU A . n A 1 177 VAL 177 172 172 VAL VAL A . n A 1 178 ARG 178 173 173 ARG ARG A . n A 1 179 VAL 179 174 174 VAL VAL A . n A 1 180 ILE 180 175 175 ILE ILE A . n A 1 181 ARG 181 176 176 ARG ARG A . n A 1 182 GLN 182 177 177 GLN GLN A . n A 1 183 GLN 183 178 178 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP 1 179 179 GNP GNP A . C 3 MG 1 180 180 MG MG A . D 4 HOH 1 1001 1001 HOH HOH A . D 4 HOH 2 1002 1002 HOH HOH A . D 4 HOH 3 1003 1003 HOH HOH A . D 4 HOH 4 1004 1004 HOH HOH A . D 4 HOH 5 1005 1005 HOH HOH A . D 4 HOH 6 1006 1006 HOH HOH A . D 4 HOH 7 1007 1007 HOH HOH A . D 4 HOH 8 1008 1008 HOH HOH A . D 4 HOH 9 1009 1009 HOH HOH A . D 4 HOH 10 1010 1010 HOH HOH A . D 4 HOH 11 1011 1011 HOH HOH A . D 4 HOH 12 1012 1012 HOH HOH A . D 4 HOH 13 1013 1013 HOH HOH A . D 4 HOH 14 1014 1014 HOH HOH A . D 4 HOH 15 1015 1015 HOH HOH A . D 4 HOH 16 1016 1016 HOH HOH A . D 4 HOH 17 1017 1017 HOH HOH A . D 4 HOH 18 1018 1018 HOH HOH A . D 4 HOH 19 1019 1019 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 32 ? A SER 27 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O2G ? B GNP . ? A GNP 179 ? 1_555 145.0 ? 2 OG ? A SER 32 ? A SER 27 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O2B ? B GNP . ? A GNP 179 ? 1_555 76.5 ? 3 O2G ? B GNP . ? A GNP 179 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O2B ? B GNP . ? A GNP 179 ? 1_555 68.5 ? 4 OG ? A SER 32 ? A SER 27 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 93.7 ? 5 O2G ? B GNP . ? A GNP 179 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 84.5 ? 6 O2B ? B GNP . ? A GNP 179 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 84.2 ? 7 OG ? A SER 32 ? A SER 27 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 86.4 ? 8 O2G ? B GNP . ? A GNP 179 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 81.6 ? 9 O2B ? B GNP . ? A GNP 179 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 72.0 ? 10 O ? D HOH . ? A HOH 1001 ? 1_555 MG ? C MG . ? A MG 180 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 155.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.value' 14 3 'Structure model' '_struct_conn.pdbx_dist_value' 15 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 3 'Structure model' '_struct_ref_seq_dif.details' 26 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BSS 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 115 ? ? 36.53 57.15 2 1 PRO A 120 ? ? -44.37 107.90 3 1 LYS A 127 ? ? 79.58 36.95 4 1 GLN A 177 ? ? -102.21 49.69 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A MET 1 ? A MET 6 7 1 Y 1 A ALA 2 ? A ALA 7 8 1 Y 1 A THR 3 ? A THR 8 9 1 Y 1 A SER 4 ? A SER 9 10 1 Y 1 A ALA 5 ? A ALA 10 11 1 Y 1 A VAL 6 ? A VAL 11 12 1 Y 1 A PRO 7 ? A PRO 12 13 1 Y 1 A SER 8 ? A SER 13 14 1 Y 1 A GLU 9 ? A GLU 14 15 1 Y 1 A ASN 10 ? A ASN 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GNP PG P N N 123 GNP O1G O N N 124 GNP O2G O N N 125 GNP O3G O N N 126 GNP N3B N N N 127 GNP PB P N R 128 GNP O1B O N N 129 GNP O2B O N N 130 GNP O3A O N N 131 GNP PA P N S 132 GNP O1A O N N 133 GNP O2A O N N 134 GNP "O5'" O N N 135 GNP "C5'" C N N 136 GNP "C4'" C N R 137 GNP "O4'" O N N 138 GNP "C3'" C N S 139 GNP "O3'" O N N 140 GNP "C2'" C N R 141 GNP "O2'" O N N 142 GNP "C1'" C N R 143 GNP N9 N Y N 144 GNP C8 C Y N 145 GNP N7 N Y N 146 GNP C5 C Y N 147 GNP C6 C Y N 148 GNP O6 O N N 149 GNP N1 N Y N 150 GNP C2 C Y N 151 GNP N2 N N N 152 GNP N3 N Y N 153 GNP C4 C Y N 154 GNP HOG2 H N N 155 GNP HOG3 H N N 156 GNP HNB3 H N N 157 GNP HOB2 H N N 158 GNP HOA2 H N N 159 GNP "H5'2" H N N 160 GNP "H5'1" H N N 161 GNP "H4'" H N N 162 GNP "H3'" H N N 163 GNP "HO3'" H N N 164 GNP "H2'" H N N 165 GNP "HO2'" H N N 166 GNP "H1'" H N N 167 GNP H8 H N N 168 GNP HN1 H N N 169 GNP HN21 H N N 170 GNP HN22 H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LYS N N N N 240 LYS CA C N S 241 LYS C C N N 242 LYS O O N N 243 LYS CB C N N 244 LYS CG C N N 245 LYS CD C N N 246 LYS CE C N N 247 LYS NZ N N N 248 LYS OXT O N N 249 LYS H H N N 250 LYS H2 H N N 251 LYS HA H N N 252 LYS HB2 H N N 253 LYS HB3 H N N 254 LYS HG2 H N N 255 LYS HG3 H N N 256 LYS HD2 H N N 257 LYS HD3 H N N 258 LYS HE2 H N N 259 LYS HE3 H N N 260 LYS HZ1 H N N 261 LYS HZ2 H N N 262 LYS HZ3 H N N 263 LYS HXT H N N 264 MET N N N N 265 MET CA C N S 266 MET C C N N 267 MET O O N N 268 MET CB C N N 269 MET CG C N N 270 MET SD S N N 271 MET CE C N N 272 MET OXT O N N 273 MET H H N N 274 MET H2 H N N 275 MET HA H N N 276 MET HB2 H N N 277 MET HB3 H N N 278 MET HG2 H N N 279 MET HG3 H N N 280 MET HE1 H N N 281 MET HE2 H N N 282 MET HE3 H N N 283 MET HXT H N N 284 MG MG MG N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GNP PG O1G doub N N 116 GNP PG O2G sing N N 117 GNP PG O3G sing N N 118 GNP PG N3B sing N N 119 GNP O2G HOG2 sing N N 120 GNP O3G HOG3 sing N N 121 GNP N3B PB sing N N 122 GNP N3B HNB3 sing N N 123 GNP PB O1B doub N N 124 GNP PB O2B sing N N 125 GNP PB O3A sing N N 126 GNP O2B HOB2 sing N N 127 GNP O3A PA sing N N 128 GNP PA O1A doub N N 129 GNP PA O2A sing N N 130 GNP PA "O5'" sing N N 131 GNP O2A HOA2 sing N N 132 GNP "O5'" "C5'" sing N N 133 GNP "C5'" "C4'" sing N N 134 GNP "C5'" "H5'2" sing N N 135 GNP "C5'" "H5'1" sing N N 136 GNP "C4'" "O4'" sing N N 137 GNP "C4'" "C3'" sing N N 138 GNP "C4'" "H4'" sing N N 139 GNP "O4'" "C1'" sing N N 140 GNP "C3'" "O3'" sing N N 141 GNP "C3'" "C2'" sing N N 142 GNP "C3'" "H3'" sing N N 143 GNP "O3'" "HO3'" sing N N 144 GNP "C2'" "O2'" sing N N 145 GNP "C2'" "C1'" sing N N 146 GNP "C2'" "H2'" sing N N 147 GNP "O2'" "HO2'" sing N N 148 GNP "C1'" N9 sing N N 149 GNP "C1'" "H1'" sing N N 150 GNP N9 C8 sing Y N 151 GNP N9 C4 sing Y N 152 GNP C8 N7 doub Y N 153 GNP C8 H8 sing N N 154 GNP N7 C5 sing Y N 155 GNP C5 C6 sing Y N 156 GNP C5 C4 doub Y N 157 GNP C6 O6 doub N N 158 GNP C6 N1 sing Y N 159 GNP N1 C2 sing Y N 160 GNP N1 HN1 sing N N 161 GNP C2 N2 sing N N 162 GNP C2 N3 doub Y N 163 GNP N2 HN21 sing N N 164 GNP N2 HN22 sing N N 165 GNP N3 C4 sing Y N 166 HIS N CA sing N N 167 HIS N H sing N N 168 HIS N H2 sing N N 169 HIS CA C sing N N 170 HIS CA CB sing N N 171 HIS CA HA sing N N 172 HIS C O doub N N 173 HIS C OXT sing N N 174 HIS CB CG sing N N 175 HIS CB HB2 sing N N 176 HIS CB HB3 sing N N 177 HIS CG ND1 sing Y N 178 HIS CG CD2 doub Y N 179 HIS ND1 CE1 doub Y N 180 HIS ND1 HD1 sing N N 181 HIS CD2 NE2 sing Y N 182 HIS CD2 HD2 sing N N 183 HIS CE1 NE2 sing Y N 184 HIS CE1 HE1 sing N N 185 HIS NE2 HE2 sing N N 186 HIS OXT HXT sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 ILE N CA sing N N 190 ILE N H sing N N 191 ILE N H2 sing N N 192 ILE CA C sing N N 193 ILE CA CB sing N N 194 ILE CA HA sing N N 195 ILE C O doub N N 196 ILE C OXT sing N N 197 ILE CB CG1 sing N N 198 ILE CB CG2 sing N N 199 ILE CB HB sing N N 200 ILE CG1 CD1 sing N N 201 ILE CG1 HG12 sing N N 202 ILE CG1 HG13 sing N N 203 ILE CG2 HG21 sing N N 204 ILE CG2 HG22 sing N N 205 ILE CG2 HG23 sing N N 206 ILE CD1 HD11 sing N N 207 ILE CD1 HD12 sing N N 208 ILE CD1 HD13 sing N N 209 ILE OXT HXT sing N N 210 LEU N CA sing N N 211 LEU N H sing N N 212 LEU N H2 sing N N 213 LEU CA C sing N N 214 LEU CA CB sing N N 215 LEU CA HA sing N N 216 LEU C O doub N N 217 LEU C OXT sing N N 218 LEU CB CG sing N N 219 LEU CB HB2 sing N N 220 LEU CB HB3 sing N N 221 LEU CG CD1 sing N N 222 LEU CG CD2 sing N N 223 LEU CG HG sing N N 224 LEU CD1 HD11 sing N N 225 LEU CD1 HD12 sing N N 226 LEU CD1 HD13 sing N N 227 LEU CD2 HD21 sing N N 228 LEU CD2 HD22 sing N N 229 LEU CD2 HD23 sing N N 230 LEU OXT HXT sing N N 231 LYS N CA sing N N 232 LYS N H sing N N 233 LYS N H2 sing N N 234 LYS CA C sing N N 235 LYS CA CB sing N N 236 LYS CA HA sing N N 237 LYS C O doub N N 238 LYS C OXT sing N N 239 LYS CB CG sing N N 240 LYS CB HB2 sing N N 241 LYS CB HB3 sing N N 242 LYS CG CD sing N N 243 LYS CG HG2 sing N N 244 LYS CG HG3 sing N N 245 LYS CD CE sing N N 246 LYS CD HD2 sing N N 247 LYS CD HD3 sing N N 248 LYS CE NZ sing N N 249 LYS CE HE2 sing N N 250 LYS CE HE3 sing N N 251 LYS NZ HZ1 sing N N 252 LYS NZ HZ2 sing N N 253 LYS NZ HZ3 sing N N 254 LYS OXT HXT sing N N 255 MET N CA sing N N 256 MET N H sing N N 257 MET N H2 sing N N 258 MET CA C sing N N 259 MET CA CB sing N N 260 MET CA HA sing N N 261 MET C O doub N N 262 MET C OXT sing N N 263 MET CB CG sing N N 264 MET CB HB2 sing N N 265 MET CB HB3 sing N N 266 MET CG SD sing N N 267 MET CG HG2 sing N N 268 MET CG HG3 sing N N 269 MET SD CE sing N N 270 MET CE HE1 sing N N 271 MET CE HE2 sing N N 272 MET CE HE3 sing N N 273 MET OXT HXT sing N N 274 PHE N CA sing N N 275 PHE N H sing N N 276 PHE N H2 sing N N 277 PHE CA C sing N N 278 PHE CA CB sing N N 279 PHE CA HA sing N N 280 PHE C O doub N N 281 PHE C OXT sing N N 282 PHE CB CG sing N N 283 PHE CB HB2 sing N N 284 PHE CB HB3 sing N N 285 PHE CG CD1 doub Y N 286 PHE CG CD2 sing Y N 287 PHE CD1 CE1 sing Y N 288 PHE CD1 HD1 sing N N 289 PHE CD2 CE2 doub Y N 290 PHE CD2 HD2 sing N N 291 PHE CE1 CZ doub Y N 292 PHE CE1 HE1 sing N N 293 PHE CE2 CZ sing Y N 294 PHE CE2 HE2 sing N N 295 PHE CZ HZ sing N N 296 PHE OXT HXT sing N N 297 PRO N CA sing N N 298 PRO N CD sing N N 299 PRO N H sing N N 300 PRO CA C sing N N 301 PRO CA CB sing N N 302 PRO CA HA sing N N 303 PRO C O doub N N 304 PRO C OXT sing N N 305 PRO CB CG sing N N 306 PRO CB HB2 sing N N 307 PRO CB HB3 sing N N 308 PRO CG CD sing N N 309 PRO CG HG2 sing N N 310 PRO CG HG3 sing N N 311 PRO CD HD2 sing N N 312 PRO CD HD3 sing N N 313 PRO OXT HXT sing N N 314 SER N CA sing N N 315 SER N H sing N N 316 SER N H2 sing N N 317 SER CA C sing N N 318 SER CA CB sing N N 319 SER CA HA sing N N 320 SER C O doub N N 321 SER C OXT sing N N 322 SER CB OG sing N N 323 SER CB HB2 sing N N 324 SER CB HB3 sing N N 325 SER OG HG sing N N 326 SER OXT HXT sing N N 327 THR N CA sing N N 328 THR N H sing N N 329 THR N H2 sing N N 330 THR CA C sing N N 331 THR CA CB sing N N 332 THR CA HA sing N N 333 THR C O doub N N 334 THR C OXT sing N N 335 THR CB OG1 sing N N 336 THR CB CG2 sing N N 337 THR CB HB sing N N 338 THR OG1 HG1 sing N N 339 THR CG2 HG21 sing N N 340 THR CG2 HG22 sing N N 341 THR CG2 HG23 sing N N 342 THR OXT HXT sing N N 343 TRP N CA sing N N 344 TRP N H sing N N 345 TRP N H2 sing N N 346 TRP CA C sing N N 347 TRP CA CB sing N N 348 TRP CA HA sing N N 349 TRP C O doub N N 350 TRP C OXT sing N N 351 TRP CB CG sing N N 352 TRP CB HB2 sing N N 353 TRP CB HB3 sing N N 354 TRP CG CD1 doub Y N 355 TRP CG CD2 sing Y N 356 TRP CD1 NE1 sing Y N 357 TRP CD1 HD1 sing N N 358 TRP CD2 CE2 doub Y N 359 TRP CD2 CE3 sing Y N 360 TRP NE1 CE2 sing Y N 361 TRP NE1 HE1 sing N N 362 TRP CE2 CZ2 sing Y N 363 TRP CE3 CZ3 doub Y N 364 TRP CE3 HE3 sing N N 365 TRP CZ2 CH2 doub Y N 366 TRP CZ2 HZ2 sing N N 367 TRP CZ3 CH2 sing Y N 368 TRP CZ3 HZ3 sing N N 369 TRP CH2 HH2 sing N N 370 TRP OXT HXT sing N N 371 TYR N CA sing N N 372 TYR N H sing N N 373 TYR N H2 sing N N 374 TYR CA C sing N N 375 TYR CA CB sing N N 376 TYR CA HA sing N N 377 TYR C O doub N N 378 TYR C OXT sing N N 379 TYR CB CG sing N N 380 TYR CB HB2 sing N N 381 TYR CB HB3 sing N N 382 TYR CG CD1 doub Y N 383 TYR CG CD2 sing Y N 384 TYR CD1 CE1 sing Y N 385 TYR CD1 HD1 sing N N 386 TYR CD2 CE2 doub Y N 387 TYR CD2 HD2 sing N N 388 TYR CE1 CZ doub Y N 389 TYR CE1 HE1 sing N N 390 TYR CE2 CZ sing Y N 391 TYR CE2 HE2 sing N N 392 TYR CZ OH sing N N 393 TYR OH HH sing N N 394 TYR OXT HXT sing N N 395 VAL N CA sing N N 396 VAL N H sing N N 397 VAL N H2 sing N N 398 VAL CA C sing N N 399 VAL CA CB sing N N 400 VAL CA HA sing N N 401 VAL C O doub N N 402 VAL C OXT sing N N 403 VAL CB CG1 sing N N 404 VAL CB CG2 sing N N 405 VAL CB HB sing N N 406 VAL CG1 HG11 sing N N 407 VAL CG1 HG12 sing N N 408 VAL CG1 HG13 sing N N 409 VAL CG2 HG21 sing N N 410 VAL CG2 HG22 sing N N 411 VAL CG2 HG23 sing N N 412 VAL OXT HXT sing N N 413 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1X1S _pdbx_initial_refinement_model.details 'PDB ENTRY 1X1S' #