data_3PIV # _entry.id 3PIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.290 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PIV RCSB RCSB062425 WWPDB D_1000062425 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3PIW _pdbx_database_related.details 'Related protein from same citation' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PIV _pdbx_database_status.recvd_initial_deposition_date 2010-11-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hamming, O.J.' 1 'Hartmann, R.' 2 'Lutfalla, G.' 3 'Levraud, J.-P.' 4 # _citation.id primary _citation.title 'Crystal Structure of Zebrafish Interferons I and II Reveals Conservation of Type I Interferon Structure in Vertebrates.' _citation.journal_abbrev J.Virol. _citation.journal_volume 85 _citation.page_first 8181 _citation.page_last 8187 _citation.year 2011 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21653665 _citation.pdbx_database_id_DOI 10.1128/JVI.00521-11 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hamming, O.J.' 1 primary 'Lutfalla, G.' 2 primary 'Levraud, J.P.' 3 primary 'Hartmann, R.' 4 # _cell.entry_id 3PIV _cell.length_a 48.834 _cell.length_b 62.247 _cell.length_c 51.306 _cell.angle_alpha 90.00 _cell.angle_beta 91.42 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PIV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Interferon 19433.566 2 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 3 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSTCEWLGRYRIITTESLNLLKNMGGKYADLETPFPSRLYTLMDKSKVEDQVKFLVLTLDHIIHLMDAREHMNSVNWDQN TVEDFLNILHRKSSDLKECVARYAKPAHKESYEIRIKRHFRTLKKILKKKQYSAEAWEQIRRVVKSHLQRMDIIASNARV NPRV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSTCEWLGRYRIITTESLNLLKNMGGKYADLETPFPSRLYTLMDKSKVEDQVKFLVLTLDHIIHLMDAREHMNSVNWDQN TVEDFLNILHRKSSDLKECVARYAKPAHKESYEIRIKRHFRTLKKILKKKQYSAEAWEQIRRVVKSHLQRMDIIASNARV NPRV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 CYS n 1 5 GLU n 1 6 TRP n 1 7 LEU n 1 8 GLY n 1 9 ARG n 1 10 TYR n 1 11 ARG n 1 12 ILE n 1 13 ILE n 1 14 THR n 1 15 THR n 1 16 GLU n 1 17 SER n 1 18 LEU n 1 19 ASN n 1 20 LEU n 1 21 LEU n 1 22 LYS n 1 23 ASN n 1 24 MET n 1 25 GLY n 1 26 GLY n 1 27 LYS n 1 28 TYR n 1 29 ALA n 1 30 ASP n 1 31 LEU n 1 32 GLU n 1 33 THR n 1 34 PRO n 1 35 PHE n 1 36 PRO n 1 37 SER n 1 38 ARG n 1 39 LEU n 1 40 TYR n 1 41 THR n 1 42 LEU n 1 43 MET n 1 44 ASP n 1 45 LYS n 1 46 SER n 1 47 LYS n 1 48 VAL n 1 49 GLU n 1 50 ASP n 1 51 GLN n 1 52 VAL n 1 53 LYS n 1 54 PHE n 1 55 LEU n 1 56 VAL n 1 57 LEU n 1 58 THR n 1 59 LEU n 1 60 ASP n 1 61 HIS n 1 62 ILE n 1 63 ILE n 1 64 HIS n 1 65 LEU n 1 66 MET n 1 67 ASP n 1 68 ALA n 1 69 ARG n 1 70 GLU n 1 71 HIS n 1 72 MET n 1 73 ASN n 1 74 SER n 1 75 VAL n 1 76 ASN n 1 77 TRP n 1 78 ASP n 1 79 GLN n 1 80 ASN n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 ASP n 1 85 PHE n 1 86 LEU n 1 87 ASN n 1 88 ILE n 1 89 LEU n 1 90 HIS n 1 91 ARG n 1 92 LYS n 1 93 SER n 1 94 SER n 1 95 ASP n 1 96 LEU n 1 97 LYS n 1 98 GLU n 1 99 CYS n 1 100 VAL n 1 101 ALA n 1 102 ARG n 1 103 TYR n 1 104 ALA n 1 105 LYS n 1 106 PRO n 1 107 ALA n 1 108 HIS n 1 109 LYS n 1 110 GLU n 1 111 SER n 1 112 TYR n 1 113 GLU n 1 114 ILE n 1 115 ARG n 1 116 ILE n 1 117 LYS n 1 118 ARG n 1 119 HIS n 1 120 PHE n 1 121 ARG n 1 122 THR n 1 123 LEU n 1 124 LYS n 1 125 LYS n 1 126 ILE n 1 127 LEU n 1 128 LYS n 1 129 LYS n 1 130 LYS n 1 131 GLN n 1 132 TYR n 1 133 SER n 1 134 ALA n 1 135 GLU n 1 136 ALA n 1 137 TRP n 1 138 GLU n 1 139 GLN n 1 140 ILE n 1 141 ARG n 1 142 ARG n 1 143 VAL n 1 144 VAL n 1 145 LYS n 1 146 SER n 1 147 HIS n 1 148 LEU n 1 149 GLN n 1 150 ARG n 1 151 MET n 1 152 ASP n 1 153 ILE n 1 154 ILE n 1 155 ALA n 1 156 SER n 1 157 ASN n 1 158 ALA n 1 159 ARG n 1 160 VAL n 1 161 ASN n 1 162 PRO n 1 163 ARG n 1 164 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'leopard danio,zebra danio,zebra fish' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ifnphi1, ifn1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8AY12_DANRE _struct_ref.pdbx_db_accession Q8AY12 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STCEWLGRYRIITTESLNLLKNMGGKYADLETPFPSRLYTLMDKSKVEDQVKFLVLTLDHIIHLMDAREHMNSVNWDQNT VEDFLNILHRKSSDLKECVARYAKPAHKESYEIRIKRHFRTLKKILKKKQYSAEAWEQIRRVVKSHLQRMDIIASNARVN PRV ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PIV A 2 ? 164 ? Q8AY12 23 ? 185 ? 2 164 2 1 3PIV B 2 ? 164 ? Q8AY12 23 ? 185 ? 2 164 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PIV GLY A 1 ? UNP Q8AY12 ? ? 'EXPRESSION TAG' 1 1 2 3PIV GLY B 1 ? UNP Q8AY12 ? ? 'EXPRESSION TAG' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PIV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.2 M NaCl, 20% PEG3350, 0.1 M HEPES pH 6.5, 3% (v/v) Jeffamine M-600, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-06-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111) double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8742 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-3' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8742 # _reflns.entry_id 3PIV _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 51.290 _reflns.d_resolution_high 2.086 _reflns.number_obs 18309 _reflns.number_all 17632 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.B_iso_Wilson_estimate 24.5 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.0864 2.2171 69 ? ? ? ? ? ? ? ? ? ? 1 1 2.2171 2.3883 86 ? ? ? ? ? ? ? ? ? ? 2 1 2.3883 2.6286 93 ? ? ? ? ? ? ? ? ? ? 3 1 2.6286 3.0089 96 ? ? ? ? ? ? ? ? ? ? 4 1 3.0089 3.7907 98 ? ? ? ? ? ? ? ? ? ? 5 1 3.7907 48.8323 98 ? ? ? ? ? ? ? ? ? ? 6 1 # _refine.entry_id 3PIV _refine.ls_number_reflns_obs 16604 _refine.ls_number_reflns_all 17632 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.14 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.819 _refine.ls_d_res_high 2.086 _refine.ls_percent_reflns_obs 90.03 _refine.ls_R_factor_obs 0.1855 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1827 _refine.ls_R_factor_R_free 0.2350 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.08 _refine.ls_number_reflns_R_free 843 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.2313 _refine.aniso_B[2][2] 2.7670 _refine.aniso_B[3][3] -4.9983 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.9861 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.383 _refine.solvent_model_param_bsol 40.310 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2595 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 2746 _refine_hist.d_res_high 2.086 _refine_hist.d_res_low 48.819 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2647 'X-RAY DIFFRACTION' ? f_angle_d 1.026 ? ? 3555 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.750 ? ? 1005 'X-RAY DIFFRACTION' ? f_chiral_restr 0.067 ? ? 393 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 443 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.0864 2.2171 1994 0.2026 69.00 0.2878 . . 115 . . . . 'X-RAY DIFFRACTION' . 2.2171 2.3883 2499 0.1989 86.00 0.3048 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.3883 2.6286 2690 0.1871 93.00 0.2445 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.6286 3.0089 2832 0.1918 96.00 0.2788 . . 115 . . . . 'X-RAY DIFFRACTION' . 3.0089 3.7907 2849 0.1765 98.00 0.2158 . . 164 . . . . 'X-RAY DIFFRACTION' . 3.7907 48.8323 2897 0.1685 98.00 0.1997 . . 178 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3PIV _struct.title 'Zebrafish interferon 1' _struct.pdbx_descriptor Interferon _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PIV _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'Interferon, zebrafish, CYTOKINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 4 ? GLY A 8 ? CYS A 4 GLY A 8 5 ? 5 HELX_P HELX_P2 2 ARG A 9 ? MET A 24 ? ARG A 9 MET A 24 1 ? 16 HELX_P HELX_P3 3 PRO A 36 ? LYS A 45 ? PRO A 36 LYS A 45 1 ? 10 HELX_P HELX_P4 4 LYS A 47 ? ASP A 67 ? LYS A 47 ASP A 67 1 ? 21 HELX_P HELX_P5 5 ALA A 68 ? MET A 72 ? ALA A 68 MET A 72 5 ? 5 HELX_P HELX_P6 6 ASP A 78 ? ARG A 102 ? ASP A 78 ARG A 102 1 ? 25 HELX_P HELX_P7 7 GLU A 110 ? LYS A 130 ? GLU A 110 LYS A 130 1 ? 21 HELX_P HELX_P8 8 SER A 133 ? ARG A 159 ? SER A 133 ARG A 159 1 ? 27 HELX_P HELX_P9 9 CYS B 4 ? GLY B 8 ? CYS B 4 GLY B 8 5 ? 5 HELX_P HELX_P10 10 ARG B 9 ? MET B 24 ? ARG B 9 MET B 24 1 ? 16 HELX_P HELX_P11 11 PRO B 36 ? LYS B 45 ? PRO B 36 LYS B 45 1 ? 10 HELX_P HELX_P12 12 LYS B 47 ? ASP B 67 ? LYS B 47 ASP B 67 1 ? 21 HELX_P HELX_P13 13 ALA B 68 ? MET B 72 ? ALA B 68 MET B 72 5 ? 5 HELX_P HELX_P14 14 ASP B 78 ? ALA B 101 ? ASP B 78 ALA B 101 1 ? 24 HELX_P HELX_P15 15 GLU B 110 ? LYS B 130 ? GLU B 110 LYS B 130 1 ? 21 HELX_P HELX_P16 16 SER B 133 ? VAL B 160 ? SER B 133 VAL B 160 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 4 A CYS 99 1_555 ? ? ? ? ? ? ? 2.043 ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 99 SG ? ? B CYS 4 B CYS 99 1_555 ? ? ? ? ? ? ? 2.067 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NI A 165' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NI B 165' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 61 ? HIS A 61 . ? 1_555 ? 2 AC1 2 HIS A 64 ? HIS A 64 . ? 1_555 ? 3 AC2 2 HIS B 61 ? HIS B 61 . ? 1_555 ? 4 AC2 2 HIS B 64 ? HIS B 64 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PIV _atom_sites.fract_transf_matrix[1][1] 0.020478 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000509 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016065 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019497 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 GLN 149 149 149 GLN GLN A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 MET 151 151 151 MET MET A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 VAL 160 160 ? ? ? A . n A 1 161 ASN 161 161 ? ? ? A . n A 1 162 PRO 162 162 ? ? ? A . n A 1 163 ARG 163 163 ? ? ? A . n A 1 164 VAL 164 164 ? ? ? A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 THR 14 14 14 THR THR B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 SER 17 17 17 SER SER B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 ASN 23 23 23 ASN ASN B . n B 1 24 MET 24 24 24 MET MET B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 TYR 28 28 28 TYR TYR B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 PRO 34 34 34 PRO PRO B . n B 1 35 PHE 35 35 35 PHE PHE B . n B 1 36 PRO 36 36 36 PRO PRO B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 TYR 40 40 40 TYR TYR B . n B 1 41 THR 41 41 41 THR THR B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 MET 43 43 43 MET MET B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 ASP 50 50 50 ASP ASP B . n B 1 51 GLN 51 51 51 GLN GLN B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 PHE 54 54 54 PHE PHE B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 HIS 61 61 61 HIS HIS B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 HIS 64 64 64 HIS HIS B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 MET 66 66 66 MET MET B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 ARG 69 69 69 ARG ARG B . n B 1 70 GLU 70 70 70 GLU GLU B . n B 1 71 HIS 71 71 71 HIS HIS B . n B 1 72 MET 72 72 72 MET MET B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 SER 74 74 74 SER SER B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 TRP 77 77 77 TRP TRP B . n B 1 78 ASP 78 78 78 ASP ASP B . n B 1 79 GLN 79 79 79 GLN GLN B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 PHE 85 85 85 PHE PHE B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 HIS 90 90 90 HIS HIS B . n B 1 91 ARG 91 91 91 ARG ALA B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 SER 93 93 93 SER SER B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 ASP 95 95 95 ASP ASP B . n B 1 96 LEU 96 96 96 LEU LEU B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 GLU 98 98 98 GLU GLU B . n B 1 99 CYS 99 99 99 CYS CYS B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 TYR 103 103 103 TYR TYR B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 PRO 106 106 106 PRO PRO B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 HIS 108 108 108 HIS HIS B . n B 1 109 LYS 109 109 109 LYS LYS B . n B 1 110 GLU 110 110 110 GLU GLU B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 TYR 112 112 112 TYR TYR B . n B 1 113 GLU 113 113 113 GLU GLU B . n B 1 114 ILE 114 114 114 ILE ILE B . n B 1 115 ARG 115 115 115 ARG ARG B . n B 1 116 ILE 116 116 116 ILE ILE B . n B 1 117 LYS 117 117 117 LYS LYS B . n B 1 118 ARG 118 118 118 ARG ARG B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 ARG 121 121 121 ARG ARG B . n B 1 122 THR 122 122 122 THR THR B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 LYS 125 125 125 LYS LYS B . n B 1 126 ILE 126 126 126 ILE ILE B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 LYS 128 128 128 LYS LYS B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 LYS 130 130 130 LYS LYS B . n B 1 131 GLN 131 131 131 GLN GLN B . n B 1 132 TYR 132 132 132 TYR TYR B . n B 1 133 SER 133 133 133 SER SER B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 TRP 137 137 137 TRP TRP B . n B 1 138 GLU 138 138 138 GLU GLU B . n B 1 139 GLN 139 139 139 GLN GLN B . n B 1 140 ILE 140 140 140 ILE ILE B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 ARG 142 142 142 ARG ARG B . n B 1 143 VAL 143 143 143 VAL VAL B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 LYS 145 145 145 LYS LYS B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 HIS 147 147 147 HIS HIS B . n B 1 148 LEU 148 148 148 LEU LEU B . n B 1 149 GLN 149 149 149 GLN GLN B . n B 1 150 ARG 150 150 150 ARG ARG B . n B 1 151 MET 151 151 151 MET MET B . n B 1 152 ASP 152 152 152 ASP ASP B . n B 1 153 ILE 153 153 153 ILE ILE B . n B 1 154 ILE 154 154 154 ILE ILE B . n B 1 155 ALA 155 155 155 ALA ALA B . n B 1 156 SER 156 156 156 SER SER B . n B 1 157 ASN 157 157 157 ASN ASN B . n B 1 158 ALA 158 158 158 ALA ALA B . n B 1 159 ARG 159 159 159 ARG ARG B . n B 1 160 VAL 160 160 160 VAL ALA B . n B 1 161 ASN 161 161 ? ? ? B . n B 1 162 PRO 162 162 ? ? ? B . n B 1 163 ARG 163 163 ? ? ? B . n B 1 164 VAL 164 164 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI 1 165 1 NI NI A . D 2 NI 1 165 2 NI NI B . E 3 HOH 1 166 2 HOH HOH A . E 3 HOH 2 167 4 HOH HOH A . E 3 HOH 3 168 6 HOH HOH A . E 3 HOH 4 169 10 HOH HOH A . E 3 HOH 5 170 12 HOH HOH A . E 3 HOH 6 171 14 HOH HOH A . E 3 HOH 7 172 18 HOH HOH A . E 3 HOH 8 173 19 HOH HOH A . E 3 HOH 9 174 20 HOH HOH A . E 3 HOH 10 175 21 HOH HOH A . E 3 HOH 11 176 23 HOH HOH A . E 3 HOH 12 177 24 HOH HOH A . E 3 HOH 13 178 26 HOH HOH A . E 3 HOH 14 179 30 HOH HOH A . E 3 HOH 15 180 31 HOH HOH A . E 3 HOH 16 181 32 HOH HOH A . E 3 HOH 17 182 33 HOH HOH A . E 3 HOH 18 183 36 HOH HOH A . E 3 HOH 19 184 38 HOH HOH A . E 3 HOH 20 185 39 HOH HOH A . E 3 HOH 21 186 40 HOH HOH A . E 3 HOH 22 187 41 HOH HOH A . E 3 HOH 23 188 42 HOH HOH A . E 3 HOH 24 189 43 HOH HOH A . E 3 HOH 25 190 44 HOH HOH A . E 3 HOH 26 191 45 HOH HOH A . E 3 HOH 27 192 48 HOH HOH A . E 3 HOH 28 193 49 HOH HOH A . E 3 HOH 29 194 50 HOH HOH A . E 3 HOH 30 195 51 HOH HOH A . E 3 HOH 31 196 57 HOH HOH A . E 3 HOH 32 197 58 HOH HOH A . E 3 HOH 33 198 60 HOH HOH A . E 3 HOH 34 199 62 HOH HOH A . E 3 HOH 35 200 66 HOH HOH A . E 3 HOH 36 201 69 HOH HOH A . E 3 HOH 37 202 71 HOH HOH A . E 3 HOH 38 203 72 HOH HOH A . E 3 HOH 39 204 75 HOH HOH A . E 3 HOH 40 205 77 HOH HOH A . E 3 HOH 41 206 81 HOH HOH A . E 3 HOH 42 207 85 HOH HOH A . E 3 HOH 43 208 88 HOH HOH A . E 3 HOH 44 209 89 HOH HOH A . E 3 HOH 45 210 90 HOH HOH A . E 3 HOH 46 211 91 HOH HOH A . E 3 HOH 47 212 93 HOH HOH A . E 3 HOH 48 213 94 HOH HOH A . E 3 HOH 49 214 97 HOH HOH A . E 3 HOH 50 215 99 HOH HOH A . E 3 HOH 51 216 101 HOH HOH A . E 3 HOH 52 217 102 HOH HOH A . E 3 HOH 53 218 103 HOH HOH A . E 3 HOH 54 219 105 HOH HOH A . E 3 HOH 55 220 109 HOH HOH A . E 3 HOH 56 221 110 HOH HOH A . E 3 HOH 57 222 111 HOH HOH A . E 3 HOH 58 223 112 HOH HOH A . E 3 HOH 59 224 114 HOH HOH A . E 3 HOH 60 225 115 HOH HOH A . E 3 HOH 61 226 120 HOH HOH A . E 3 HOH 62 227 121 HOH HOH A . E 3 HOH 63 228 125 HOH HOH A . E 3 HOH 64 229 126 HOH HOH A . E 3 HOH 65 230 127 HOH HOH A . E 3 HOH 66 231 128 HOH HOH A . E 3 HOH 67 232 130 HOH HOH A . E 3 HOH 68 233 132 HOH HOH A . E 3 HOH 69 234 135 HOH HOH A . E 3 HOH 70 235 137 HOH HOH A . E 3 HOH 71 236 139 HOH HOH A . E 3 HOH 72 237 140 HOH HOH A . E 3 HOH 73 238 148 HOH HOH A . F 3 HOH 1 166 1 HOH HOH B . F 3 HOH 2 167 3 HOH HOH B . F 3 HOH 3 168 5 HOH HOH B . F 3 HOH 4 169 7 HOH HOH B . F 3 HOH 5 170 8 HOH HOH B . F 3 HOH 6 171 9 HOH HOH B . F 3 HOH 7 172 11 HOH HOH B . F 3 HOH 8 173 13 HOH HOH B . F 3 HOH 9 174 15 HOH HOH B . F 3 HOH 10 175 16 HOH HOH B . F 3 HOH 11 176 17 HOH HOH B . F 3 HOH 12 177 22 HOH HOH B . F 3 HOH 13 178 25 HOH HOH B . F 3 HOH 14 179 27 HOH HOH B . F 3 HOH 15 180 28 HOH HOH B . F 3 HOH 16 181 29 HOH HOH B . F 3 HOH 17 182 34 HOH HOH B . F 3 HOH 18 183 35 HOH HOH B . F 3 HOH 19 184 37 HOH HOH B . F 3 HOH 20 185 46 HOH HOH B . F 3 HOH 21 186 47 HOH HOH B . F 3 HOH 22 187 52 HOH HOH B . F 3 HOH 23 188 53 HOH HOH B . F 3 HOH 24 189 54 HOH HOH B . F 3 HOH 25 190 55 HOH HOH B . F 3 HOH 26 191 56 HOH HOH B . F 3 HOH 27 192 59 HOH HOH B . F 3 HOH 28 193 61 HOH HOH B . F 3 HOH 29 194 63 HOH HOH B . F 3 HOH 30 195 64 HOH HOH B . F 3 HOH 31 196 65 HOH HOH B . F 3 HOH 32 197 67 HOH HOH B . F 3 HOH 33 198 68 HOH HOH B . F 3 HOH 34 199 70 HOH HOH B . F 3 HOH 35 200 73 HOH HOH B . F 3 HOH 36 201 74 HOH HOH B . F 3 HOH 37 202 76 HOH HOH B . F 3 HOH 38 203 78 HOH HOH B . F 3 HOH 39 204 79 HOH HOH B . F 3 HOH 40 205 80 HOH HOH B . F 3 HOH 41 206 82 HOH HOH B . F 3 HOH 42 207 83 HOH HOH B . F 3 HOH 43 208 84 HOH HOH B . F 3 HOH 44 209 86 HOH HOH B . F 3 HOH 45 210 87 HOH HOH B . F 3 HOH 46 211 92 HOH HOH B . F 3 HOH 47 212 95 HOH HOH B . F 3 HOH 48 213 96 HOH HOH B . F 3 HOH 49 214 98 HOH HOH B . F 3 HOH 50 215 100 HOH HOH B . F 3 HOH 51 216 104 HOH HOH B . F 3 HOH 52 217 106 HOH HOH B . F 3 HOH 53 218 107 HOH HOH B . F 3 HOH 54 219 108 HOH HOH B . F 3 HOH 55 220 113 HOH HOH B . F 3 HOH 56 221 116 HOH HOH B . F 3 HOH 57 222 117 HOH HOH B . F 3 HOH 58 223 118 HOH HOH B . F 3 HOH 59 224 119 HOH HOH B . F 3 HOH 60 225 122 HOH HOH B . F 3 HOH 61 226 123 HOH HOH B . F 3 HOH 62 227 124 HOH HOH B . F 3 HOH 63 228 129 HOH HOH B . F 3 HOH 64 229 131 HOH HOH B . F 3 HOH 65 230 133 HOH HOH B . F 3 HOH 66 231 134 HOH HOH B . F 3 HOH 67 232 136 HOH HOH B . F 3 HOH 68 233 138 HOH HOH B . F 3 HOH 69 234 141 HOH HOH B . F 3 HOH 70 235 142 HOH HOH B . F 3 HOH 71 236 143 HOH HOH B . F 3 HOH 72 237 144 HOH HOH B . F 3 HOH 73 238 145 HOH HOH B . F 3 HOH 74 239 146 HOH HOH B . F 3 HOH 75 240 147 HOH HOH B . F 3 HOH 76 241 149 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2011-08-03 3 'Structure model' 1 2 2018-03-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 68 ? ? -142.64 39.09 2 1 ALA B 68 ? ? -142.16 41.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 159 ? CG ? A ARG 159 CG 2 1 Y 1 A ARG 159 ? CD ? A ARG 159 CD 3 1 Y 1 A ARG 159 ? NE ? A ARG 159 NE 4 1 Y 1 A ARG 159 ? CZ ? A ARG 159 CZ 5 1 Y 1 A ARG 159 ? NH1 ? A ARG 159 NH1 6 1 Y 1 A ARG 159 ? NH2 ? A ARG 159 NH2 7 1 Y 1 B GLU 5 ? CG ? B GLU 5 CG 8 1 Y 1 B GLU 5 ? CD ? B GLU 5 CD 9 1 Y 1 B GLU 5 ? OE1 ? B GLU 5 OE1 10 1 Y 1 B GLU 5 ? OE2 ? B GLU 5 OE2 11 1 Y 1 B ARG 91 ? CG ? B ARG 91 CG 12 1 Y 1 B ARG 91 ? CD ? B ARG 91 CD 13 1 Y 1 B ARG 91 ? NE ? B ARG 91 NE 14 1 Y 1 B ARG 91 ? CZ ? B ARG 91 CZ 15 1 Y 1 B ARG 91 ? NH1 ? B ARG 91 NH1 16 1 Y 1 B ARG 91 ? NH2 ? B ARG 91 NH2 17 1 Y 1 B ARG 159 ? CG ? B ARG 159 CG 18 1 Y 1 B ARG 159 ? CD ? B ARG 159 CD 19 1 Y 1 B ARG 159 ? NE ? B ARG 159 NE 20 1 Y 1 B ARG 159 ? CZ ? B ARG 159 CZ 21 1 Y 1 B ARG 159 ? NH1 ? B ARG 159 NH1 22 1 Y 1 B ARG 159 ? NH2 ? B ARG 159 NH2 23 1 Y 1 B VAL 160 ? CG1 ? B VAL 160 CG1 24 1 Y 1 B VAL 160 ? CG2 ? B VAL 160 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A VAL 160 ? A VAL 160 5 1 Y 1 A ASN 161 ? A ASN 161 6 1 Y 1 A PRO 162 ? A PRO 162 7 1 Y 1 A ARG 163 ? A ARG 163 8 1 Y 1 A VAL 164 ? A VAL 164 9 1 Y 1 B GLY 1 ? B GLY 1 10 1 Y 1 B SER 2 ? B SER 2 11 1 Y 1 B THR 3 ? B THR 3 12 1 Y 1 B ASN 161 ? B ASN 161 13 1 Y 1 B PRO 162 ? B PRO 162 14 1 Y 1 B ARG 163 ? B ARG 163 15 1 Y 1 B VAL 164 ? B VAL 164 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH #