HEADER LYASE 10-NOV-10 3PJT TITLE STRUCTURE OF PSEUDOMONAS FLUORESCENCE LAPD EAL DOMAIN COMPLEXED WITH TITLE 2 C-DI-GMP, C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC DIMERIC GMP BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 400-648; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 205922; SOURCE 4 STRAIN: PF0-1; SOURCE 5 GENE: LAPD, PFL01_0131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, C-DI-GMP RECEPTOR, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONDERMANN,M.V.A.S.NAVARRO,P.KRASTEVA REVDAT 3 21-FEB-24 3PJT 1 REMARK HETSYN REVDAT 2 23-FEB-11 3PJT 1 JRNL REVDAT 1 09-FEB-11 3PJT 0 JRNL AUTH M.V.NAVARRO,P.D.NEWELL,P.V.KRASTEVA,D.CHATTERJEE,D.R.MADDEN, JRNL AUTH 2 G.A.O'TOOLE,H.SONDERMANN JRNL TITL STRUCTURAL BASIS FOR C-DI-GMP-MEDIATED INSIDE-OUT SIGNALING JRNL TITL 2 CONTROLLING PERIPLASMIC PROTEOLYSIS. JRNL REF PLOS BIOL. V. 9 00588 2011 JRNL REFN ISSN 1544-9173 JRNL PMID 21304926 JRNL DOI 10.1371/JOURNAL.PBIO.1000588 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 20130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1415 - 6.0521 0.99 1466 157 0.1663 0.1836 REMARK 3 2 6.0521 - 4.8080 0.99 1402 147 0.1503 0.2183 REMARK 3 3 4.8080 - 4.2015 0.99 1364 145 0.1319 0.1873 REMARK 3 4 4.2015 - 3.8179 0.99 1372 143 0.1425 0.1916 REMARK 3 5 3.8179 - 3.5446 0.99 1349 144 0.1665 0.2171 REMARK 3 6 3.5446 - 3.3358 0.99 1357 143 0.1801 0.2437 REMARK 3 7 3.3358 - 3.1688 0.98 1303 139 0.2016 0.2852 REMARK 3 8 3.1688 - 3.0310 0.97 1330 141 0.2142 0.3097 REMARK 3 9 3.0310 - 2.9144 0.95 1273 136 0.2243 0.3141 REMARK 3 10 2.9144 - 2.8138 0.95 1297 134 0.2039 0.2917 REMARK 3 11 2.8138 - 2.7259 0.93 1249 133 0.2067 0.2973 REMARK 3 12 2.7259 - 2.6480 0.91 1235 130 0.2111 0.2939 REMARK 3 13 2.6480 - 2.5783 0.87 1165 120 0.2136 0.3151 REMARK 3 14 2.5783 - 2.5154 0.77 1045 111 0.2261 0.3315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 41.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.11530 REMARK 3 B22 (A**2) : -5.42160 REMARK 3 B33 (A**2) : 10.53690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4044 REMARK 3 ANGLE : 1.271 5484 REMARK 3 CHIRALITY : 0.082 600 REMARK 3 PLANARITY : 0.005 702 REMARK 3 DIHEDRAL : 24.642 1602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9769 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.2 M AMMONIUM REMARK 280 SULFATE, 24% PEG 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.19550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.19550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.41500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.19550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.41500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.19550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.41500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 400 REMARK 465 SER A 401 REMARK 465 LEU A 402 REMARK 465 VAL A 403 REMARK 465 ALA A 404 REMARK 465 ASP A 405 REMARK 465 VAL A 406 REMARK 465 GLY A 407 REMARK 465 ASP A 408 REMARK 465 GLN B 400 REMARK 465 SER B 401 REMARK 465 LEU B 402 REMARK 465 VAL B 403 REMARK 465 ALA B 404 REMARK 465 ASP B 405 REMARK 465 VAL B 406 REMARK 465 GLY B 407 REMARK 465 ASP B 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 480 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 574 3.62 -65.45 REMARK 500 THR B 439 4.27 -66.20 REMARK 500 GLN B 457 159.58 -47.00 REMARK 500 GLU B 535 -7.74 -59.44 REMARK 500 GLN B 536 38.16 -140.01 REMARK 500 ARG B 565 42.65 -98.75 REMARK 500 SER B 594 -7.87 -59.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 2256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 2256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PJU RELATED DB: PDB REMARK 900 RELATED ID: 3PJV RELATED DB: PDB REMARK 900 RELATED ID: 3PJW RELATED DB: PDB REMARK 900 RELATED ID: 3PJX RELATED DB: PDB DBREF 3PJT A 400 648 UNP Q3KK31 Q3KK31_PSEPF 400 648 DBREF 3PJT B 400 648 UNP Q3KK31 Q3KK31_PSEPF 400 648 SEQRES 1 A 249 GLN SER LEU VAL ALA ASP VAL GLY ASP ASP HIS HIS ALA SEQRES 2 A 249 TRP HIS ARG LEU LEU ASP GLN ALA LEU ASN GLN ARG ARG SEQRES 3 A 249 PHE GLU LEU PHE PHE GLN PRO VAL VAL ALA ALA GLN ASP SEQRES 4 A 249 THR GLN LEU VAL LEU HIS TYR LYS VAL LEU SER ARG LEU SEQRES 5 A 249 LEU ASP GLU GLN GLY GLN THR ILE PRO ALA GLY ARG PHE SEQRES 6 A 249 LEU PRO TRP LEU GLU ARG PHE GLY TRP THR ALA ARG LEU SEQRES 7 A 249 ASP ARG LEU MET LEU GLU ARG VAL LEU GLU GLN MET ALA SEQRES 8 A 249 GLY HIS GLU GLU SER LEU ALA LEU ASN LEU SER SER ALA SEQRES 9 A 249 THR LEU ALA ASP PRO GLN ALA LEU ASN LYS VAL PHE GLU SEQRES 10 A 249 ILE LEU ARG ALA HIS SER ASN LEU GLY ALA ARG LEU THR SEQRES 11 A 249 LEU GLU ILE GLY GLU GLU GLN LEU PRO GLU GLN ALA VAL SEQRES 12 A 249 LEU GLU GLN LEU THR ARG ARG LEU ARG GLU LEU GLY PHE SEQRES 13 A 249 SER LEU SER LEU GLN ARG PHE GLY GLY ARG PHE SER MET SEQRES 14 A 249 ILE GLY ASN LEU ALA ARG LEU GLY LEU ALA TYR LEU LYS SEQRES 15 A 249 ILE ASP GLY SER TYR ILE ARG ALA ILE ASP GLN GLU SER SEQRES 16 A 249 ASP LYS ARG LEU PHE ILE GLU ALA ILE GLN ARG ALA ALA SEQRES 17 A 249 HIS SER ILE ASP LEU PRO LEU ILE ALA GLU ARG VAL GLU SEQRES 18 A 249 THR GLU GLY GLU LEU SER VAL ILE ARG GLU MET GLY LEU SEQRES 19 A 249 TYR GLY VAL GLN GLY GLN LEU PHE GLY GLU PRO LYS PRO SEQRES 20 A 249 TRP GLY SEQRES 1 B 249 GLN SER LEU VAL ALA ASP VAL GLY ASP ASP HIS HIS ALA SEQRES 2 B 249 TRP HIS ARG LEU LEU ASP GLN ALA LEU ASN GLN ARG ARG SEQRES 3 B 249 PHE GLU LEU PHE PHE GLN PRO VAL VAL ALA ALA GLN ASP SEQRES 4 B 249 THR GLN LEU VAL LEU HIS TYR LYS VAL LEU SER ARG LEU SEQRES 5 B 249 LEU ASP GLU GLN GLY GLN THR ILE PRO ALA GLY ARG PHE SEQRES 6 B 249 LEU PRO TRP LEU GLU ARG PHE GLY TRP THR ALA ARG LEU SEQRES 7 B 249 ASP ARG LEU MET LEU GLU ARG VAL LEU GLU GLN MET ALA SEQRES 8 B 249 GLY HIS GLU GLU SER LEU ALA LEU ASN LEU SER SER ALA SEQRES 9 B 249 THR LEU ALA ASP PRO GLN ALA LEU ASN LYS VAL PHE GLU SEQRES 10 B 249 ILE LEU ARG ALA HIS SER ASN LEU GLY ALA ARG LEU THR SEQRES 11 B 249 LEU GLU ILE GLY GLU GLU GLN LEU PRO GLU GLN ALA VAL SEQRES 12 B 249 LEU GLU GLN LEU THR ARG ARG LEU ARG GLU LEU GLY PHE SEQRES 13 B 249 SER LEU SER LEU GLN ARG PHE GLY GLY ARG PHE SER MET SEQRES 14 B 249 ILE GLY ASN LEU ALA ARG LEU GLY LEU ALA TYR LEU LYS SEQRES 15 B 249 ILE ASP GLY SER TYR ILE ARG ALA ILE ASP GLN GLU SER SEQRES 16 B 249 ASP LYS ARG LEU PHE ILE GLU ALA ILE GLN ARG ALA ALA SEQRES 17 B 249 HIS SER ILE ASP LEU PRO LEU ILE ALA GLU ARG VAL GLU SEQRES 18 B 249 THR GLU GLY GLU LEU SER VAL ILE ARG GLU MET GLY LEU SEQRES 19 B 249 TYR GLY VAL GLN GLY GLN LEU PHE GLY GLU PRO LYS PRO SEQRES 20 B 249 TRP GLY HET C2E A2256 46 HET C2E B2256 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *115(H2 O) HELIX 1 1 ASP A 409 GLN A 423 1 15 HELIX 2 2 ALA A 461 PHE A 471 1 11 HELIX 3 3 TRP A 473 MET A 489 1 17 HELIX 4 4 ALA A 490 HIS A 492 5 3 HELIX 5 5 SER A 501 ALA A 506 1 6 HELIX 6 6 ASP A 507 ALA A 520 1 14 HELIX 7 7 HIS A 521 ALA A 526 5 6 HELIX 8 8 GLU A 535 LEU A 537 5 3 HELIX 9 9 GLU A 539 LEU A 553 1 15 HELIX 10 10 ARG A 565 GLY A 576 5 12 HELIX 11 11 GLY A 584 ILE A 587 5 4 HELIX 12 12 GLU A 593 ASP A 595 5 3 HELIX 13 13 LYS A 596 ILE A 610 1 15 HELIX 14 14 THR A 621 MET A 631 1 11 HELIX 15 15 GLY A 638 GLY A 642 5 5 HELIX 16 16 HIS B 411 GLN B 423 1 13 HELIX 17 17 ALA B 461 GLY B 472 1 12 HELIX 18 18 TRP B 473 MET B 489 1 17 HELIX 19 19 ALA B 490 HIS B 492 5 3 HELIX 20 20 SER B 501 ASP B 507 1 7 HELIX 21 21 ASP B 507 HIS B 521 1 15 HELIX 22 22 SER B 522 GLY B 525 5 4 HELIX 23 23 GLU B 535 LEU B 537 5 3 HELIX 24 24 GLU B 539 LEU B 553 1 15 HELIX 25 25 ARG B 565 GLY B 576 5 12 HELIX 26 26 GLY B 584 ILE B 587 5 4 HELIX 27 27 ALA B 589 ASP B 595 5 7 HELIX 28 28 LYS B 596 ILE B 610 1 15 HELIX 29 29 THR B 621 MET B 631 1 11 HELIX 30 30 GLY B 638 GLY B 642 5 5 SHEET 1 A 4 THR A 458 PRO A 460 0 SHEET 2 A 4 ASP A 438 LEU A 452 -1 N LEU A 451 O ILE A 459 SHEET 3 A 4 PHE A 426 ALA A 435 -1 N VAL A 433 O HIS A 444 SHEET 4 A 4 LYS A 645 PRO A 646 -1 O LYS A 645 N PHE A 430 SHEET 1 B10 THR A 458 PRO A 460 0 SHEET 2 B10 ASP A 438 LEU A 452 -1 N LEU A 451 O ILE A 459 SHEET 3 B10 LEU A 496 ASN A 499 1 O ALA A 497 N VAL A 447 SHEET 4 B10 LEU A 528 GLY A 533 1 O THR A 529 N LEU A 498 SHEET 5 B10 SER A 556 PHE A 562 1 O SER A 558 N LEU A 530 SHEET 6 B10 LEU A 580 ILE A 582 1 O LYS A 581 N LEU A 559 SHEET 7 B10 LEU A 614 ALA A 616 1 O ILE A 615 N ILE A 582 SHEET 8 B10 GLY A 635 VAL A 636 1 O GLY A 635 N ALA A 616 SHEET 9 B10 PHE A 426 ALA A 435 -1 N VAL A 434 O VAL A 636 SHEET 10 B10 LYS A 645 PRO A 646 -1 O LYS A 645 N PHE A 430 SHEET 1 C10 THR B 458 PRO B 460 0 SHEET 2 C10 VAL B 442 LEU B 452 -1 N LEU B 451 O ILE B 459 SHEET 3 C10 LEU B 496 ASN B 499 1 O ALA B 497 N VAL B 447 SHEET 4 C10 LEU B 528 GLY B 533 1 O THR B 529 N LEU B 496 SHEET 5 C10 SER B 556 PHE B 562 1 O GLN B 560 N ILE B 532 SHEET 6 C10 LEU B 580 ILE B 582 1 O LYS B 581 N LEU B 559 SHEET 7 C10 LEU B 614 ALA B 616 1 O ILE B 615 N LEU B 580 SHEET 8 C10 GLY B 635 VAL B 636 1 O GLY B 635 N ALA B 616 SHEET 9 C10 PHE B 426 ALA B 435 -1 N VAL B 434 O VAL B 636 SHEET 10 C10 VAL B 442 LEU B 452 -1 O ARG B 450 N GLU B 427 CISPEP 1 PHE B 562 GLY B 563 0 -5.00 SITE 1 AC1 25 HOH A 2 HOH A 18 HOH A 27 HOH A 40 SITE 2 AC1 25 HOH A 50 GLN A 431 LYS A 446 LEU A 448 SITE 3 AC1 25 SER A 449 ARG A 450 PRO A 460 ALA A 461 SITE 4 AC1 25 GLY A 462 LEU A 465 ASP A 478 MET A 481 SITE 5 AC1 25 ASN A 499 GLN A 560 ARG A 561 ARG A 618 SITE 6 AC1 25 VAL A 619 GLU A 620 GLY A 638 GLN A 639 SITE 7 AC1 25 PRO A 644 SITE 1 AC2 22 HOH B 17 HOH B 84 GLN B 431 LYS B 446 SITE 2 AC2 22 LEU B 448 SER B 449 ARG B 450 PRO B 460 SITE 3 AC2 22 ALA B 461 GLY B 462 LEU B 465 ASP B 478 SITE 4 AC2 22 MET B 481 ASN B 499 GLN B 560 ARG B 561 SITE 5 AC2 22 ARG B 618 VAL B 619 GLU B 620 GLY B 638 SITE 6 AC2 22 GLN B 639 PRO B 644 CRYST1 41.445 204.830 142.391 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007023 0.00000