HEADER IMMUNE SYSTEM 13-NOV-10 3PL6 TITLE STRUCTURE OF AUTOIMMUNE TCR HY.1B11 IN COMPLEX WITH HLA-DQ1 AND MBP TITLE 2 85-99 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II HLA-DQ-ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-194; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MHC CLASS II HLA-DQ-BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 31-232; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: T-CELL RECEPTOR ALPHA CHAIN; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: MBP PEPTIDE / T-CELL RECEPTOR BETA CHAIN CHIMERA; COMPND 17 CHAIN: D; COMPND 18 FRAGMENT: MBP (UNP RESIDUES 84-98); COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DQA1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHINESE HAMSTER OVARY (CHO); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: HLA-DQB1; SOURCE 15 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: CHINESE HAMSTER OVARY (CHO); SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR-MHC COMPLEX, IMMUNOGLOBULIN FOLD, IMMUNE RECEPTOR, MEMBRANE, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SETHI,K.W.WUCHERPFENNIG REVDAT 7 13-MAR-24 3PL6 1 SOURCE HETSYN REVDAT 6 29-JUL-20 3PL6 1 COMPND REMARK DBREF SEQADV REVDAT 6 2 1 HETNAM LINK SITE REVDAT 5 08-NOV-17 3PL6 1 REMARK REVDAT 4 26-JUL-17 3PL6 1 SOURCE REVDAT 3 16-FEB-11 3PL6 1 JRNL REVDAT 2 19-JAN-11 3PL6 1 JRNL REVDAT 1 22-DEC-10 3PL6 0 JRNL AUTH D.K.SETHI,D.A.SCHUBERT,A.K.ANDERS,A.HEROUX,D.A.BONSOR, JRNL AUTH 2 C.P.THOMAS,E.J.SUNDBERG,J.PYRDOL,K.W.WUCHERPFENNIG JRNL TITL A HIGHLY TILTED BINDING MODE BY A SELF-REACTIVE T CELL JRNL TITL 2 RECEPTOR RESULTS IN ALTERED ENGAGEMENT OF PEPTIDE AND MHC. JRNL REF J.EXP.MED. V. 208 91 2011 JRNL REFN ISSN 0022-1007 JRNL PMID 21199956 JRNL DOI 10.1084/JEM.20100725 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2045 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3771 REMARK 3 BIN R VALUE (WORKING SET) : 0.3562 REMARK 3 BIN FREE R VALUE : 0.3903 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 180 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78400 REMARK 3 B22 (A**2) : 19.71200 REMARK 3 B33 (A**2) : -22.49600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.503 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.424 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.489 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.958 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.998 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 37.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULFATE, 12% PEG8000, REMARK 280 0.05 M SODIUM CITRATE, PH 6.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.56150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.46050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.40750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.46050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.56150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.40750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -2 REMARK 465 GLU A 181 REMARK 465 ILE A 182 REMARK 465 PRO A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 MET A 186 REMARK 465 SER A 187 REMARK 465 GLU A 188 REMARK 465 LEU A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 GLU B -1 REMARK 465 GLY B 0 REMARK 465 ARG B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 105 REMARK 465 THR B 106 REMARK 465 GLU B 107 REMARK 465 ALA B 108 REMARK 465 LEU B 109 REMARK 465 ASN B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 SER B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 SER B 197 REMARK 465 LYS B 198 REMARK 465 VAL B 199 REMARK 465 ASP B 200 REMARK 465 ILE C 193 REMARK 465 ILE C 194 REMARK 465 PRO C 195 REMARK 465 GLU C 196 REMARK 465 ASP C 197 REMARK 465 THR C 198 REMARK 465 PHE C 199 REMARK 465 PHE C 200 REMARK 465 PRO C 201 REMARK 465 SER C 202 REMARK 465 PRO C 203 REMARK 465 GLU C 204 REMARK 465 SER C 205 REMARK 465 SER C 206 REMARK 465 SER C 207 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 GLU D 3 REMARK 465 GLY D 18 REMARK 465 GLY D 19 REMARK 465 SER D 20 REMARK 465 GLY D 21 REMARK 465 GLY D 22 REMARK 465 GLY D 23 REMARK 465 GLY D 24 REMARK 465 SER D 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 PHE A 48 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 LEU A 154 CG CD1 CD2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 THR C 24 OG1 CG2 REMARK 470 ARG C 43 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 VAL D 44 CG1 CG2 REMARK 470 ASP D 49 CG OD1 OD2 REMARK 470 ARG D 109 CG CD NE CZ NH1 NH2 REMARK 470 SER D 212 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 52 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ASN C 191 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 PRO D 153 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 7.57 -53.43 REMARK 500 SER A 49 54.29 -108.39 REMARK 500 LYS A 50 86.68 -51.02 REMARK 500 PHE A 51 111.51 -23.05 REMARK 500 LEU A 99 139.61 -37.92 REMARK 500 PHE A 113 128.12 -175.04 REMARK 500 ASN B 19 65.74 61.61 REMARK 500 ASN B 33 -107.46 59.61 REMARK 500 ALA B 86 -42.06 -145.15 REMARK 500 TYR B 123 137.95 -174.22 REMARK 500 PRO B 124 -167.89 -68.09 REMARK 500 THR B 139 -56.14 -129.13 REMARK 500 TRP B 153 35.41 73.86 REMARK 500 ASN C 3 119.87 170.35 REMARK 500 SER C 52 -5.35 -53.41 REMARK 500 GLN C 60 -126.42 66.02 REMARK 500 ALA C 86 -176.82 178.97 REMARK 500 SER C 152 -39.40 -30.99 REMARK 500 ASP C 163 130.30 -30.08 REMARK 500 MET C 164 6.19 -52.38 REMARK 500 ARG C 165 -138.09 44.60 REMARK 500 ASP C 182 51.06 -107.09 REMARK 500 CYS C 185 -15.30 58.43 REMARK 500 ALA C 188 50.76 -159.57 REMARK 500 PHE C 189 111.55 -30.76 REMARK 500 ASN C 190 126.28 171.37 REMARK 500 PRO D 5 97.03 21.08 REMARK 500 LEU D 71 -64.09 -122.37 REMARK 500 ASP D 81 119.16 -163.15 REMARK 500 ARG D 94 59.94 -151.56 REMARK 500 PRO D 95 -22.38 -37.66 REMARK 500 SER D 98 -110.88 -133.20 REMARK 500 ALA D 113 -179.10 178.02 REMARK 500 ASP D 176 28.69 -72.05 REMARK 500 LYS D 187 115.94 70.21 REMARK 500 GLN D 203 88.75 -166.12 REMARK 500 ALA D 266 -134.49 -47.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YMM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN D IS CHIMERIC: MBP PEPTIDE IS CONNECTED TO THE N-TERMINUS OF REMARK 999 T-CELL RECEPTOR BETA CHAIN VIA AN ENGINEERED LINKER DBREF 3PL6 A -2 191 UNP Q30066 Q30066_HUMAN 1 194 DBREF 3PL6 B -1 198 UNP Q67AJ6 Q67AJ6_HUMAN 31 230 DBREF 3PL6 C 2 207 PDB 3PL6 3PL6 2 207 DBREF 3PL6 D 3 17 UNP D3YTB3 D3YTB3_HUMAN 84 98 DBREF 3PL6 D 25 268 PDB 3PL6 3PL6 25 268 SEQADV 3PL6 VAL B 199 UNP Q67AJ6 EXPRESSION TAG SEQADV 3PL6 ASP B 200 UNP Q67AJ6 EXPRESSION TAG SEQADV 3PL6 MET D 1 UNP D3YTB3 EXPRESSION TAG SEQADV 3PL6 LYS D 2 UNP D3YTB3 EXPRESSION TAG SEQADV 3PL6 GLY D 18 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 GLY D 19 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 SER D 20 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 GLY D 21 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 GLY D 22 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 GLY D 23 PDB 3PL6 EXPRESSION TAG SEQADV 3PL6 GLY D 24 PDB 3PL6 EXPRESSION TAG SEQRES 1 A 194 GLU ASP ILE VAL ALA ASP HIS VAL ALA SER CYS GLY VAL SEQRES 2 A 194 ASN LEU TYR GLN PHE TYR GLY PRO SER GLY GLN TYR THR SEQRES 3 A 194 HIS GLU PHE ASP GLY ASP GLU GLN PHE TYR VAL ASP LEU SEQRES 4 A 194 GLU ARG LYS GLU THR ALA TRP ARG TRP PRO GLU PHE SER SEQRES 5 A 194 LYS PHE GLY GLY PHE ASP PRO GLN GLY ALA LEU ARG ASN SEQRES 6 A 194 MET ALA VAL ALA LYS HIS ASN LEU ASN ILE MET ILE LYS SEQRES 7 A 194 ARG TYR ASN SER THR ALA ALA THR ASN GLU VAL PRO GLU SEQRES 8 A 194 VAL THR VAL PHE SER LYS SER PRO VAL THR LEU GLY GLN SEQRES 9 A 194 PRO ASN THR LEU ILE CYS LEU VAL ASP ASN ILE PHE PRO SEQRES 10 A 194 PRO VAL VAL ASN ILE THR TRP LEU SER ASN GLY GLN SER SEQRES 11 A 194 VAL THR GLU GLY VAL SER GLU THR SER PHE LEU SER LYS SEQRES 12 A 194 SER ASP HIS SER PHE PHE LYS ILE SER TYR LEU THR PHE SEQRES 13 A 194 LEU PRO SER ALA ASP GLU ILE TYR ASP CYS LYS VAL GLU SEQRES 14 A 194 HIS TRP GLY LEU ASP GLN PRO LEU LEU LYS HIS TRP GLU SEQRES 15 A 194 PRO GLU ILE PRO ALA PRO MET SER GLU LEU THR GLU SEQRES 1 B 202 GLU GLY ARG ASP SER PRO GLU ASP PHE VAL TYR GLN PHE SEQRES 2 B 202 LYS GLY LEU CYS TYR PHE THR ASN GLY THR GLU ARG VAL SEQRES 3 B 202 ARG GLY VAL THR ARG HIS ILE TYR ASN ARG GLU GLU TYR SEQRES 4 B 202 VAL ARG PHE ASP SER ASP VAL GLY VAL TYR ARG ALA VAL SEQRES 5 B 202 THR PRO GLN GLY ARG PRO VAL ALA GLU TYR TRP ASN SER SEQRES 6 B 202 GLN LYS GLU VAL LEU GLU GLY ALA ARG ALA SER VAL ASP SEQRES 7 B 202 ARG VAL CYS ARG HIS ASN TYR GLU VAL ALA TYR ARG GLY SEQRES 8 B 202 ILE LEU GLN ARG ARG VAL GLU PRO THR VAL THR ILE SER SEQRES 9 B 202 PRO SER ARG THR GLU ALA LEU ASN HIS HIS ASN LEU LEU SEQRES 10 B 202 ILE CYS SER VAL THR ASP PHE TYR PRO SER GLN ILE LYS SEQRES 11 B 202 VAL ARG TRP PHE ARG ASN ASP GLN GLU GLU THR ALA GLY SEQRES 12 B 202 VAL VAL SER THR PRO LEU ILE ARG ASN GLY ASP TRP THR SEQRES 13 B 202 PHE GLN ILE LEU VAL MET LEU GLU MET THR PRO GLN ARG SEQRES 14 B 202 GLY ASP VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU SEQRES 15 B 202 GLN SER PRO ILE THR VAL GLU TRP ARG ALA GLN SER GLU SEQRES 16 B 202 SER ALA GLN SER LYS VAL ASP SEQRES 1 C 206 GLU ASN VAL GLU GLN HIS PRO SER THR LEU SER VAL GLN SEQRES 2 C 206 GLU GLY ASP SER ALA VAL ILE LYS CYS THR TYR SER ASP SEQRES 3 C 206 SER ALA SER ASN TYR PHE PRO TRP TYR LYS GLN GLU LEU SEQRES 4 C 206 GLY LYS ARG PRO GLN LEU ILE ILE ASP ILE ARG SER ASN SEQRES 5 C 206 VAL GLY GLU LYS LYS ASP GLN ARG ILE ALA VAL THR LEU SEQRES 6 C 206 ASN LYS THR ALA LYS HIS PHE SER LEU HIS ILE THR GLU SEQRES 7 C 206 THR GLN PRO GLU ASP SER ALA VAL TYR PHE CYS ALA ALA SEQRES 8 C 206 SER SER PHE GLY ASN GLU LYS LEU THR PHE GLY THR GLY SEQRES 9 C 206 THR ARG LEU THR ILE ILE PRO ASN ILE GLN ASN PRO ASP SEQRES 10 C 206 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 C 206 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 C 206 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 C 206 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 C 206 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 C 206 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 C 206 ASP THR PHE PHE PRO SER PRO GLU SER SER SER SEQRES 1 D 268 MET LYS GLU ASN PRO VAL VAL HIS PHE PHE LYS ASN ILE SEQRES 2 D 268 VAL THR PRO ARG GLY GLY SER GLY GLY GLY GLY GLY GLY SEQRES 3 D 268 ALA GLY VAL SER GLN THR PRO SER ASN LYS VAL THR GLU SEQRES 4 D 268 LYS GLY LYS TYR VAL GLU LEU ARG CYS ASP PRO ILE SER SEQRES 5 D 268 GLY HIS THR ALA LEU TYR TRP TYR ARG GLN SER LEU GLY SEQRES 6 D 268 GLN GLY PRO GLU PHE LEU ILE TYR PHE GLN GLY THR GLY SEQRES 7 D 268 ALA ALA ASP ASP SER GLY LEU PRO ASN ASP ARG PHE PHE SEQRES 8 D 268 ALA VAL ARG PRO GLU GLY SER VAL SER THR LEU LYS ILE SEQRES 9 D 268 GLN ARG THR GLU ARG GLY ASP SER ALA VAL TYR LEU CYS SEQRES 10 D 268 ALA THR SER ALA LEU GLY ASP THR GLN TYR PHE GLY PRO SEQRES 11 D 268 GLY THR ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL SEQRES 12 D 268 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA SEQRES 13 D 268 GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 14 D 268 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 15 D 268 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 16 D 268 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 17 D 268 SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 18 D 268 THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 19 D 268 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 20 D 268 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 21 D 268 GLU ALA TRP GLY ARG ALA ASP SER MODRES 3PL6 ASN B 19 ASN GLYCOSYLATION SITE MODRES 3PL6 ASN A 118 ASN GLYCOSYLATION SITE HET NAG A1181 14 HET NAG B5467 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 7 HOH *93(H2 O) HELIX 1 1 PRO A 56 TYR A 77 1 22 HELIX 2 2 THR B 51 GLN B 53 5 3 HELIX 3 3 GLY B 54 GLN B 64 1 11 HELIX 4 4 GLN B 64 VAL B 78 1 15 HELIX 5 5 VAL B 78 ALA B 86 1 9 HELIX 6 6 ALA B 86 LEU B 91 1 6 HELIX 7 7 GLN C 81 SER C 85 5 5 HELIX 8 8 GLU D 108 SER D 112 5 5 HELIX 9 9 ASP D 139 VAL D 143 5 5 HELIX 10 10 SER D 154 GLN D 162 1 9 HELIX 11 11 ALA D 221 GLN D 225 1 5 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N TYR A 33 O ALA A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N HIS A 24 O GLN A 31 SHEET 4 A 8 HIS A 4 GLN A 14 -1 N SER A 7 O GLU A 25 SHEET 5 A 8 VAL B 8 THR B 18 -1 O GLY B 13 N GLY A 9 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O ARG B 25 N TYR B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 SER A 93 0 SHEET 2 B 4 ASN A 103 ILE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O PHE A 145 N ILE A 112 SHEET 4 B 4 VAL A 132 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 SER A 93 0 SHEET 2 C 4 ASN A 103 ILE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O PHE A 145 N ILE A 112 SHEET 4 C 4 LEU A 138 SER A 139 -1 N LEU A 138 O PHE A 146 SHEET 1 D 4 GLN A 126 SER A 127 0 SHEET 2 D 4 ASN A 118 SER A 123 -1 N SER A 123 O GLN A 126 SHEET 3 D 4 TYR A 161 GLU A 166 -1 O LYS A 164 N THR A 120 SHEET 4 D 4 LEU A 174 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 THR B 98 PRO B 103 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 E 4 PHE B 155 GLU B 162 -1 O ILE B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 THR B 98 PRO B 103 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 F 4 PHE B 155 GLU B 162 -1 O ILE B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 ARG B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 LYS B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O HIS B 174 N ARG B 130 SHEET 4 G 4 ILE B 184 ARG B 189 -1 O TRP B 188 N TYR B 171 SHEET 1 H 5 VAL C 4 HIS C 7 0 SHEET 2 H 5 ALA C 19 TYR C 25 -1 O THR C 24 N GLU C 5 SHEET 3 H 5 HIS C 72 ILE C 77 -1 O ILE C 77 N ALA C 19 SHEET 4 H 5 ILE C 62 ASN C 67 -1 N ALA C 63 O HIS C 76 SHEET 5 H 5 GLU C 56 ASP C 59 -1 N ASP C 59 O ILE C 62 SHEET 1 I 5 THR C 10 GLN C 14 0 SHEET 2 I 5 THR C 106 ILE C 111 1 O THR C 109 N LEU C 11 SHEET 3 I 5 ALA C 86 SER C 94 -1 N ALA C 86 O LEU C 108 SHEET 4 I 5 SER C 30 GLN C 38 -1 N TYR C 36 O PHE C 89 SHEET 5 I 5 PRO C 44 ARG C 51 -1 O GLN C 45 N LYS C 37 SHEET 1 J 4 THR C 10 GLN C 14 0 SHEET 2 J 4 THR C 106 ILE C 111 1 O THR C 109 N LEU C 11 SHEET 3 J 4 ALA C 86 SER C 94 -1 N ALA C 86 O LEU C 108 SHEET 4 J 4 THR C 101 PHE C 102 -1 O THR C 101 N ALA C 92 SHEET 1 K 4 ALA C 120 GLN C 123 0 SHEET 2 K 4 SER C 133 THR C 138 -1 O LEU C 136 N TYR C 122 SHEET 3 K 4 SER C 171 SER C 178 -1 O ALA C 176 N CYS C 135 SHEET 4 K 4 TYR C 155 ILE C 156 -1 N TYR C 155 O TRP C 177 SHEET 1 L 4 ALA C 120 GLN C 123 0 SHEET 2 L 4 SER C 133 THR C 138 -1 O LEU C 136 N TYR C 122 SHEET 3 L 4 SER C 171 SER C 178 -1 O ALA C 176 N CYS C 135 SHEET 4 L 4 CYS C 160 LEU C 162 -1 N LEU C 162 O SER C 171 SHEET 1 M 6 ASN D 35 GLU D 39 0 SHEET 2 M 6 THR D 132 LEU D 137 1 O LEU D 137 N THR D 38 SHEET 3 M 6 ALA D 113 SER D 120 -1 N ALA D 113 O LEU D 134 SHEET 4 M 6 ALA D 56 GLN D 62 -1 N TYR D 58 O ALA D 118 SHEET 5 M 6 GLU D 69 GLN D 75 -1 O PHE D 74 N LEU D 57 SHEET 6 M 6 GLY D 78 ASP D 81 -1 O ALA D 80 N TYR D 73 SHEET 1 N 4 ASN D 35 GLU D 39 0 SHEET 2 N 4 THR D 132 LEU D 137 1 O LEU D 137 N THR D 38 SHEET 3 N 4 ALA D 113 SER D 120 -1 N ALA D 113 O LEU D 134 SHEET 4 N 4 TYR D 127 PHE D 128 -1 O TYR D 127 N THR D 119 SHEET 1 O 3 VAL D 44 CYS D 48 0 SHEET 2 O 3 SER D 100 ILE D 104 -1 O ILE D 104 N VAL D 44 SHEET 3 O 3 PHE D 90 VAL D 93 -1 N PHE D 91 O LYS D 103 SHEET 1 P 4 GLU D 147 PHE D 151 0 SHEET 2 P 4 LYS D 163 PHE D 173 -1 O VAL D 167 N PHE D 151 SHEET 3 P 4 TYR D 211 SER D 220 -1 O VAL D 219 N ALA D 164 SHEET 4 P 4 VAL D 193 THR D 195 -1 N CYS D 194 O ARG D 216 SHEET 1 Q 4 GLU D 147 PHE D 151 0 SHEET 2 Q 4 LYS D 163 PHE D 173 -1 O VAL D 167 N PHE D 151 SHEET 3 Q 4 TYR D 211 SER D 220 -1 O VAL D 219 N ALA D 164 SHEET 4 Q 4 LEU D 200 LYS D 201 -1 N LEU D 200 O SER D 212 SHEET 1 R 4 GLU D 188 VAL D 189 0 SHEET 2 R 4 VAL D 178 VAL D 184 -1 N TRP D 182 O VAL D 189 SHEET 3 R 4 HIS D 230 PHE D 237 -1 O GLN D 234 N SER D 181 SHEET 4 R 4 GLN D 256 TRP D 263 -1 O GLN D 256 N PHE D 237 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.05 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.06 SSBOND 4 CYS C 23 CYS C 90 1555 1555 2.04 SSBOND 5 CYS C 135 CYS C 185 1555 1555 2.04 SSBOND 6 CYS C 160 CYS D 194 1555 1555 2.05 SSBOND 7 CYS D 48 CYS D 117 1555 1555 2.03 SSBOND 8 CYS D 168 CYS D 233 1555 1555 2.02 LINK ND2 ASN A 118 C1 NAG A1181 1555 1555 1.46 LINK ND2 ASN B 19 C1 NAG B5467 1555 1555 1.45 CISPEP 1 GLY A 17 PRO A 18 0 -0.39 CISPEP 2 PHE A 113 PRO A 114 0 -0.27 CISPEP 3 TYR B 123 PRO B 124 0 -0.60 CISPEP 4 HIS C 7 PRO C 8 0 1.09 CISPEP 5 THR D 32 PRO D 33 0 -0.11 CISPEP 6 TYR D 174 PRO D 175 0 -0.33 CRYST1 73.123 124.815 134.921 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007412 0.00000