HEADER OXIDOREDUCTASE 14-NOV-10 3PL8 TITLE PYRANOSE 2-OXIDASE H167A COMPLEX WITH 3-DEOXY-3-FLUORO-BETA-D-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRANOSE 2-OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYRANOSE OXIDASE; COMPND 5 EC: 1.1.3.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES OCHRACEA; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 230624; SOURCE 5 GENE: P2O; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(D+) KEYWDS SUBSTRATE COMPLEX, H167A MUTANT, HOMOTETRAMER, GMC OXIDOREDUCTASE, KEYWDS 2 PHBH FOLD, ROSSMANN DOMAIN, OXIDOREDUCTASE, OXIDASE, FAD COFACTOR, KEYWDS 3 PYRANOSE OXIDATION EXPDTA X-RAY DIFFRACTION AUTHOR T.C.TAN,C.DIVNE REVDAT 5 06-SEP-23 3PL8 1 HETSYN REVDAT 4 29-JUL-20 3PL8 1 REMARK SEQADV SITE REVDAT 3 08-NOV-17 3PL8 1 REMARK REVDAT 2 24-OCT-12 3PL8 1 JRNL VERSN REVDAT 1 27-APR-11 3PL8 0 JRNL AUTH T.C.TAN,D.HALTRICH,C.DIVNE JRNL TITL REGIOSELECTIVE CONTROL OF BETA-D-GLUCOSE OXIDATION BY JRNL TITL 2 PYRANOSE 2-OXIDASE IS INTIMATELY COUPLED TO CONFORMATIONAL JRNL TITL 3 DEGENERACY JRNL REF J.MOL.BIOL. V. 409 588 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21515286 JRNL DOI 10.1016/J.JMB.2011.04.019 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 139886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2858 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 361 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4513 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED INDIVIDUAL ANISOTROPIC B REMARK 3 FACTORS REMARK 4 REMARK 4 3PL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IGO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 50MM MGCL2, 10% (W/V)% REMARK 280 MONOMETHYLETHER PEG 2000, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.77500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.58000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.77500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.58000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.58000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.58000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.55000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 101.55000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 127.16000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 101.55000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 101.55000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 127.16000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 PHE A 10 REMARK 465 ASN A 11 REMARK 465 PHE A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 LEU A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 ASP A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 MET A 43 REMARK 465 ASP A 44 REMARK 465 ILE A 45 REMARK 465 THR A 619 REMARK 465 SER A 620 REMARK 465 GLU A 621 REMARK 465 ALA A 622 REMARK 465 GLN A 623 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 81 CB ASP A 81 CG -0.169 REMARK 500 VAL A 160 CB VAL A 160 CG2 -0.145 REMARK 500 ASP A 211 CB ASP A 211 CG 0.151 REMARK 500 ASP A 211 CG ASP A 211 OD1 0.156 REMARK 500 GLU A 478 CG GLU A 478 CD 0.112 REMARK 500 GLU A 482 CG GLU A 482 CD 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 MET A 112 CG - SD - CE ANGL. DEV. = -20.5 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 211 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 406 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 510 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 10.09 -142.34 REMARK 500 ASN A 92 43.48 -87.62 REMARK 500 ASN A 99 55.59 -140.54 REMARK 500 LEU A 152 79.14 -108.70 REMARK 500 ASP A 187 85.13 -168.82 REMARK 500 LYS A 231 105.27 -44.55 REMARK 500 PRO A 342 -1.66 -57.73 REMARK 500 ASN A 344 64.91 -167.76 REMARK 500 HIS A 450 -168.85 -164.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 400 THR A 401 149.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IGO RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE H167A COMPLEX WITH 2-DEOXY-2-FLUORO-BETA-D- REMARK 900 GLUCOSE REMARK 900 RELATED ID: 1TT0 RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE WILD TYPE IN COMPLEX WITH ACETATE DBREF 3PL8 A 1 623 UNP Q7ZA32 Q7ZA32_TRAOC 1 623 SEQADV 3PL8 ALA A 167 UNP Q7ZA32 HIS 167 ENGINEERED MUTATION SEQRES 1 A 623 MET SER THR SER SER SER ASP PRO PHE PHE ASN PHE ALA SEQRES 2 A 623 LYS SER SER PHE ARG SER ALA ALA ALA GLN LYS ALA SER SEQRES 3 A 623 ALA SER SER LEU PRO PRO LEU PRO GLY PRO ASP LYS LYS SEQRES 4 A 623 VAL PRO GLY MET ASP ILE LYS TYR ASP VAL VAL ILE VAL SEQRES 5 A 623 GLY SER GLY PRO ILE GLY CYS THR TYR ALA ARG GLU LEU SEQRES 6 A 623 VAL GLY ALA GLY TYR LYS VAL ALA MET PHE ASP ILE GLY SEQRES 7 A 623 GLU ILE ASP SER GLY LEU LYS ILE GLY ALA HIS LYS LYS SEQRES 8 A 623 ASN THR VAL GLU TYR GLN LYS ASN ILE ASP LYS PHE VAL SEQRES 9 A 623 ASN VAL ILE GLN GLY GLN LEU MET SER VAL SER VAL PRO SEQRES 10 A 623 VAL ASN THR LEU VAL VAL ASP THR LEU SER PRO THR SER SEQRES 11 A 623 TRP GLN ALA SER THR PHE PHE VAL ARG ASN GLY SER ASN SEQRES 12 A 623 PRO GLU GLN ASP PRO LEU ARG ASN LEU SER GLY GLN ALA SEQRES 13 A 623 VAL THR ARG VAL VAL GLY GLY MET SER THR ALA TRP THR SEQRES 14 A 623 CYS ALA THR PRO ARG PHE ASP ARG GLU GLN ARG PRO LEU SEQRES 15 A 623 LEU VAL LYS ASP ASP ALA ASP ALA ASP ASP ALA GLU TRP SEQRES 16 A 623 ASP ARG LEU TYR THR LYS ALA GLU SER TYR PHE GLN THR SEQRES 17 A 623 GLY THR ASP GLN PHE LYS GLU SER ILE ARG HIS ASN LEU SEQRES 18 A 623 VAL LEU ASN LYS LEU THR GLU GLU TYR LYS GLY GLN ARG SEQRES 19 A 623 ASP PHE GLN GLN ILE PRO LEU ALA ALA THR ARG ARG SER SEQRES 20 A 623 PRO THR PHE VAL GLU TRP SER SER ALA ASN THR VAL PHE SEQRES 21 A 623 ASP LEU GLN ASN ARG PRO ASN THR ASP ALA PRO GLU GLU SEQRES 22 A 623 ARG PHE ASN LEU PHE PRO ALA VAL ALA CYS GLU ARG VAL SEQRES 23 A 623 VAL ARG ASN ALA LEU ASN SER GLU ILE GLU SER LEU HIS SEQRES 24 A 623 ILE HIS ASP LEU ILE SER GLY ASP ARG PHE GLU ILE LYS SEQRES 25 A 623 ALA ASP VAL TYR VAL LEU THR ALA GLY ALA VAL HIS ASN SEQRES 26 A 623 THR GLN LEU LEU VAL ASN SER GLY PHE GLY GLN LEU GLY SEQRES 27 A 623 ARG PRO ASN PRO ALA ASN PRO PRO GLU LEU LEU PRO SER SEQRES 28 A 623 LEU GLY SER TYR ILE THR GLU GLN SER LEU VAL PHE CYS SEQRES 29 A 623 GLN THR VAL MET SER THR GLU LEU ILE ASP SER VAL LYS SEQRES 30 A 623 SER ASP MET THR ILE ARG GLY THR PRO GLY GLU LEU THR SEQRES 31 A 623 TYR SER VAL THR TYR THR PRO GLY ALA SER THR ASN LYS SEQRES 32 A 623 HIS PRO ASP TRP TRP ASN GLU LYS VAL LYS ASN HIS MET SEQRES 33 A 623 MET GLN HIS GLN GLU ASP PRO LEU PRO ILE PRO PHE GLU SEQRES 34 A 623 ASP PRO GLU PRO GLN VAL THR THR LEU PHE GLN PRO SER SEQRES 35 A 623 HIS PRO TRP HIS THR GLN ILE HIS ARG ASP ALA PHE SER SEQRES 36 A 623 TYR GLY ALA VAL GLN GLN SER ILE ASP SER ARG LEU ILE SEQRES 37 A 623 VAL ASP TRP ARG PHE PHE GLY ARG THR GLU PRO LYS GLU SEQRES 38 A 623 GLU ASN LYS LEU TRP PHE SER ASP LYS ILE THR ASP ALA SEQRES 39 A 623 TYR ASN MET PRO GLN PRO THR PHE ASP PHE ARG PHE PRO SEQRES 40 A 623 ALA GLY ARG THR SER LYS GLU ALA GLU ASP MET MET THR SEQRES 41 A 623 ASP MET CYS VAL MET SER ALA LYS ILE GLY GLY PHE LEU SEQRES 42 A 623 PRO GLY SER LEU PRO GLN PHE MET GLU PRO GLY LEU VAL SEQRES 43 A 623 LEU HIS LEU GLY GLY THR HIS ARG MET GLY PHE ASP GLU SEQRES 44 A 623 LYS GLU ASP ASN CYS CYS VAL ASN THR ASP SER ARG VAL SEQRES 45 A 623 PHE GLY PHE LYS ASN LEU PHE LEU GLY GLY CYS GLY ASN SEQRES 46 A 623 ILE PRO THR ALA TYR GLY ALA ASN PRO THR LEU THR ALA SEQRES 47 A 623 MET SER LEU ALA ILE LYS SER CYS GLU TYR ILE LYS GLN SEQRES 48 A 623 ASN PHE THR PRO SER PRO PHE THR SER GLU ALA GLN HET FAD A 801 53 HET MES A 901 12 HET G3F A 903 12 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM G3F 3-DEOXY-3-FLUORO-BETA-D-GLUCOPYRANOSE HETSYN G3F 3-DEOXY-3-FLUORO-BETA-D-GLUCOSE; 3-DEOXY-3-FLUORO-D- HETSYN 2 G3F GLUCOSE; 3-DEOXY-3-FLUORO-GLUCOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 MES C6 H13 N O4 S FORMUL 4 G3F C6 H11 F O5 FORMUL 5 HOH *528(H2 O) HELIX 1 1 GLY A 55 ALA A 68 1 14 HELIX 2 2 THR A 93 ASN A 99 1 7 HELIX 3 3 ILE A 100 LYS A 102 5 3 HELIX 4 4 PHE A 103 GLN A 110 1 8 HELIX 5 5 GLY A 162 ALA A 167 5 6 HELIX 6 6 ASP A 176 ARG A 180 5 5 HELIX 7 7 ASP A 187 GLN A 207 1 21 HELIX 8 8 SER A 216 TYR A 230 1 15 HELIX 9 9 SER A 255 PHE A 260 1 6 HELIX 10 10 ALA A 320 ASN A 331 1 12 HELIX 11 11 SER A 369 LYS A 377 1 9 HELIX 12 12 PRO A 405 HIS A 419 1 15 HELIX 13 13 ASP A 464 ARG A 466 5 3 HELIX 14 14 GLY A 509 ALA A 527 1 19 HELIX 15 15 GLY A 582 ILE A 586 5 5 HELIX 16 16 PRO A 594 PHE A 613 1 20 SHEET 1 A 6 ARG A 265 ASN A 267 0 SHEET 2 A 6 ALA A 270 PHE A 278 -1 O PHE A 275 N ARG A 265 SHEET 3 A 6 LYS A 71 PHE A 75 1 N MET A 74 O PHE A 278 SHEET 4 A 6 TYR A 47 VAL A 52 1 N ILE A 51 O PHE A 75 SHEET 5 A 6 ALA A 313 LEU A 318 1 O VAL A 317 N VAL A 52 SHEET 6 A 6 LEU A 578 LEU A 580 1 O PHE A 579 N LEU A 318 SHEET 1 B 2 MET A 112 SER A 113 0 SHEET 2 B 2 ALA A 156 VAL A 157 -1 O VAL A 157 N MET A 112 SHEET 1 C 3 THR A 208 GLY A 209 0 SHEET 2 C 3 LEU A 241 SER A 247 -1 O LEU A 241 N GLY A 209 SHEET 3 C 3 PHE A 250 TRP A 253 -1 O GLU A 252 N THR A 244 SHEET 1 D 6 GLN A 237 GLN A 238 0 SHEET 2 D 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 D 6 TRP A 445 HIS A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 D 6 ILE A 468 GLY A 475 -1 O ASP A 470 N HIS A 450 SHEET 5 D 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 D 6 GLY A 530 PHE A 532 -1 O GLY A 531 N VAL A 367 SHEET 1 E 6 GLN A 237 GLN A 238 0 SHEET 2 E 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 E 6 TRP A 445 HIS A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 E 6 ILE A 468 GLY A 475 -1 O ASP A 470 N HIS A 450 SHEET 5 E 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 E 6 GLN A 539 PHE A 540 -1 O GLN A 539 N PHE A 363 SHEET 1 F 3 VAL A 281 ARG A 288 0 SHEET 2 F 3 ILE A 295 ASP A 302 -1 O SER A 297 N VAL A 287 SHEET 3 F 3 ARG A 308 ILE A 311 -1 O PHE A 309 N ILE A 300 SHEET 1 G 2 THR A 381 ARG A 383 0 SHEET 2 G 2 SER A 392 THR A 394 -1 O THR A 394 N THR A 381 SHEET 1 H 2 LYS A 484 THR A 492 0 SHEET 2 H 2 PRO A 498 ASP A 503 -1 O THR A 501 N TRP A 486 CISPEP 1 ARG A 265 PRO A 266 0 12.96 CRYST1 101.550 101.550 127.160 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007864 0.00000