HEADER PROTEIN BINDING/LIGASE 15-NOV-10 3PLF TITLE REVERSE BINDING MODE OF METRD PEPTIDE COMPLEXED WITH C-CBL TKB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METRD PEPTIDE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL; COMPND 7 CHAIN: B, D; COMPND 8 FRAGMENT: TKB DOMAIN; COMPND 9 SYNONYM: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE, PROTO-ONCOGENE C- COMPND 10 CBL, RING FINGER PROTEIN 55, SIGNAL TRANSDUCTION PROTEIN CBL; COMPND 11 EC: 6.3.2.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS IS A DESIGNED PEPTIDE (TWO RESIDUES SWITCHED SOURCE 4 POSITION) BASED ON HUMAN MET PROTEIN SEQUENCE.; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: C-CBL; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS C-CBL TKB DOMAIN, MET, REVERSE BINDING, PROTEIN BINDING-LIGASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,J.SIVARAMAN REVDAT 5 06-DEC-23 3PLF 1 REMARK REVDAT 4 01-NOV-23 3PLF 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 3PLF 1 REMARK REVDAT 2 05-JUN-13 3PLF 1 DBREF JRNL VERSN REVDAT 1 01-DEC-10 3PLF 0 JRNL AUTH Q.SUN,C.NG,G.R.GUY,J.SIVARAMAN JRNL TITL AN ADJACENT ARGININE, AND THE PHOSPHORYLATED TYROSINE IN THE JRNL TITL 2 C-MET RECEPTOR TARGET SEQUENCE, DICTATES THE ORIENTATION OF JRNL TITL 3 C-CBL BINDING JRNL REF FEBS LETT. V. 585 281 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21163258 JRNL DOI 10.1016/J.FEBSLET.2010.11.060 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 46063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 584 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5152 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6954 ; 1.627 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 4.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;37.057 ;23.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 930 ;16.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.501 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3878 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3042 ; 2.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4916 ; 3.262 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2110 ; 5.058 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2038 ; 7.114 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5152 ; 3.229 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 49 B 349 6 REMARK 3 1 D 49 D 349 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 2471 ; 0.310 ; 5.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 2471 ; 2.790 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1002 A 1005 6 REMARK 3 1 C 1002 C 1005 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 A (A): 40 ; 0.300 ; 5.000 REMARK 3 LOOSE THERMAL 2 A (A**2): 40 ; 1.860 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 349 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5846 1.0059 0.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0203 REMARK 3 T33: 0.0106 T12: 0.0004 REMARK 3 T13: -0.0006 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1077 L22: 0.0714 REMARK 3 L33: 0.0806 L12: -0.0224 REMARK 3 L13: 0.0053 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0104 S13: 0.0052 REMARK 3 S21: 0.0021 S22: 0.0014 S23: -0.0025 REMARK 3 S31: -0.0025 S32: 0.0014 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 49 D 349 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5538 -0.3283 30.2172 REMARK 3 T TENSOR REMARK 3 T11: 0.0021 T22: 0.0178 REMARK 3 T33: 0.0114 T12: 0.0002 REMARK 3 T13: -0.0002 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.0607 REMARK 3 L33: 0.0006 L12: -0.0109 REMARK 3 L13: -0.0026 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0073 S13: -0.0017 REMARK 3 S21: 0.0020 S22: -0.0017 S23: -0.0084 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3PLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXIOM 200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3BUX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PROPANE, 50MM AMMONIUM REMARK 280 SULFATE, PH 6.5, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.24150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 998 REMARK 465 GLU A 999 REMARK 465 SER A 1000 REMARK 465 VAL A 1001 REMARK 465 THR A 1006 REMARK 465 PHE A 1007 REMARK 465 PRO A 1008 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 LEU B 25 REMARK 465 ILE B 26 REMARK 465 GLY B 27 REMARK 465 LEU B 28 REMARK 465 MET B 29 REMARK 465 LYS B 30 REMARK 465 ASP B 31 REMARK 465 ALA B 32 REMARK 465 PHE B 33 REMARK 465 GLN B 34 REMARK 465 PRO B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 HIS B 39 REMARK 465 HIS B 40 REMARK 465 HIS B 41 REMARK 465 HIS B 42 REMARK 465 LEU B 43 REMARK 465 SER B 44 REMARK 465 PRO B 45 REMARK 465 HIS B 46 REMARK 465 PRO B 47 REMARK 465 PRO B 48 REMARK 465 THR B 350 REMARK 465 GLY B 351 REMARK 465 ASN C 998 REMARK 465 GLU C 999 REMARK 465 SER C 1000 REMARK 465 VAL C 1001 REMARK 465 THR C 1006 REMARK 465 PHE C 1007 REMARK 465 PRO C 1008 REMARK 465 GLY D 23 REMARK 465 SER D 24 REMARK 465 LEU D 25 REMARK 465 ILE D 26 REMARK 465 GLY D 27 REMARK 465 LEU D 28 REMARK 465 MET D 29 REMARK 465 LYS D 30 REMARK 465 ASP D 31 REMARK 465 ALA D 32 REMARK 465 PHE D 33 REMARK 465 GLN D 34 REMARK 465 PRO D 35 REMARK 465 HIS D 36 REMARK 465 HIS D 37 REMARK 465 HIS D 38 REMARK 465 HIS D 39 REMARK 465 HIS D 40 REMARK 465 HIS D 41 REMARK 465 HIS D 42 REMARK 465 LEU D 43 REMARK 465 SER D 44 REMARK 465 PRO D 45 REMARK 465 HIS D 46 REMARK 465 PRO D 47 REMARK 465 PRO D 48 REMARK 465 THR D 350 REMARK 465 GLY D 351 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 259 O HOH B 546 1.89 REMARK 500 OD2 ASP B 86 O HOH B 583 1.91 REMARK 500 OD2 ASP A 1004 O HOH A 557 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 220 CD GLU B 220 OE2 -0.082 REMARK 500 CYS D 59 CB CYS D 59 SG -0.118 REMARK 500 GLU D 220 CD GLU D 220 OE2 -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 343 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1004 -169.63 -104.64 REMARK 500 LYS B 105 40.34 -141.44 REMARK 500 LYS B 137 -129.24 54.06 REMARK 500 ASN B 144 -6.84 73.85 REMARK 500 PHE B 169 66.81 -119.70 REMARK 500 ALA B 262 -55.43 -134.45 REMARK 500 ASP C1004 -169.32 -118.35 REMARK 500 LYS D 137 -125.11 53.80 REMARK 500 PHE D 169 67.27 -118.94 REMARK 500 SER D 171 10.38 57.87 REMARK 500 ALA D 262 -55.32 -132.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 229 OD1 REMARK 620 2 THR B 231 OG1 98.6 REMARK 620 3 ASN B 233 OD1 88.8 80.2 REMARK 620 4 TYR B 235 O 91.7 157.0 79.5 REMARK 620 5 GLU B 240 OE2 95.6 69.1 149.3 130.6 REMARK 620 6 GLU B 240 OE1 123.0 106.9 144.5 84.1 51.6 REMARK 620 7 HOH B 399 O 168.4 70.0 86.6 98.0 83.1 64.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 229 OD1 REMARK 620 2 THR D 231 OG1 96.5 REMARK 620 3 ASN D 233 OD1 85.3 80.3 REMARK 620 4 TYR D 235 O 92.8 156.1 78.5 REMARK 620 5 GLU D 240 OE2 95.1 73.3 153.5 127.8 REMARK 620 6 GLU D 240 OE1 122.2 111.1 146.9 81.8 51.0 REMARK 620 7 HOH D 403 O 170.8 76.0 88.2 92.2 87.9 66.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1 DBREF 3PLF B 25 351 UNP P22681 CBL_HUMAN 25 351 DBREF 3PLF D 25 351 UNP P22681 CBL_HUMAN 25 351 DBREF 3PLF A 998 1008 PDB 3PLF 3PLF 998 1008 DBREF 3PLF C 998 1008 PDB 3PLF 3PLF 998 1008 SEQADV 3PLF GLY B 23 UNP P22681 EXPRESSION TAG SEQADV 3PLF SER B 24 UNP P22681 EXPRESSION TAG SEQADV 3PLF GLY D 23 UNP P22681 EXPRESSION TAG SEQADV 3PLF SER D 24 UNP P22681 EXPRESSION TAG SEQRES 1 A 11 ASN GLU SER VAL ARG PTR ASP ALA THR PHE PRO SEQRES 1 B 329 GLY SER LEU ILE GLY LEU MET LYS ASP ALA PHE GLN PRO SEQRES 2 B 329 HIS HIS HIS HIS HIS HIS HIS LEU SER PRO HIS PRO PRO SEQRES 3 B 329 GLY THR VAL ASP LYS LYS MET VAL GLU LYS CYS TRP LYS SEQRES 4 B 329 LEU MET ASP LYS VAL VAL ARG LEU CYS GLN ASN PRO LYS SEQRES 5 B 329 LEU ALA LEU LYS ASN SER PRO PRO TYR ILE LEU ASP LEU SEQRES 6 B 329 LEU PRO ASP THR TYR GLN HIS LEU ARG THR ILE LEU SER SEQRES 7 B 329 ARG TYR GLU GLY LYS MET GLU THR LEU GLY GLU ASN GLU SEQRES 8 B 329 TYR PHE ARG VAL PHE MET GLU ASN LEU MET LYS LYS THR SEQRES 9 B 329 LYS GLN THR ILE SER LEU PHE LYS GLU GLY LYS GLU ARG SEQRES 10 B 329 MET TYR GLU GLU ASN SER GLN PRO ARG ARG ASN LEU THR SEQRES 11 B 329 LYS LEU SER LEU ILE PHE SER HIS MET LEU ALA GLU LEU SEQRES 12 B 329 LYS GLY ILE PHE PRO SER GLY LEU PHE GLN GLY ASP THR SEQRES 13 B 329 PHE ARG ILE THR LYS ALA ASP ALA ALA GLU PHE TRP ARG SEQRES 14 B 329 LYS ALA PHE GLY GLU LYS THR ILE VAL PRO TRP LYS SER SEQRES 15 B 329 PHE ARG GLN ALA LEU HIS GLU VAL HIS PRO ILE SER SER SEQRES 16 B 329 GLY LEU GLU ALA MET ALA LEU LYS SER THR ILE ASP LEU SEQRES 17 B 329 THR CYS ASN ASP TYR ILE SER VAL PHE GLU PHE ASP ILE SEQRES 18 B 329 PHE THR ARG LEU PHE GLN PRO TRP SER SER LEU LEU ARG SEQRES 19 B 329 ASN TRP ASN SER LEU ALA VAL THR HIS PRO GLY TYR MET SEQRES 20 B 329 ALA PHE LEU THR TYR ASP GLU VAL LYS ALA ARG LEU GLN SEQRES 21 B 329 LYS PHE ILE HIS LYS PRO GLY SER TYR ILE PHE ARG LEU SEQRES 22 B 329 SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY TYR VAL SEQRES 23 B 329 THR ALA ASP GLY ASN ILE LEU GLN THR ILE PRO HIS ASN SEQRES 24 B 329 LYS PRO LEU PHE GLN ALA LEU ILE ASP GLY PHE ARG GLU SEQRES 25 B 329 GLY PHE TYR LEU PHE PRO ASP GLY ARG ASN GLN ASN PRO SEQRES 26 B 329 ASP LEU THR GLY SEQRES 1 C 11 ASN GLU SER VAL ARG PTR ASP ALA THR PHE PRO SEQRES 1 D 329 GLY SER LEU ILE GLY LEU MET LYS ASP ALA PHE GLN PRO SEQRES 2 D 329 HIS HIS HIS HIS HIS HIS HIS LEU SER PRO HIS PRO PRO SEQRES 3 D 329 GLY THR VAL ASP LYS LYS MET VAL GLU LYS CYS TRP LYS SEQRES 4 D 329 LEU MET ASP LYS VAL VAL ARG LEU CYS GLN ASN PRO LYS SEQRES 5 D 329 LEU ALA LEU LYS ASN SER PRO PRO TYR ILE LEU ASP LEU SEQRES 6 D 329 LEU PRO ASP THR TYR GLN HIS LEU ARG THR ILE LEU SER SEQRES 7 D 329 ARG TYR GLU GLY LYS MET GLU THR LEU GLY GLU ASN GLU SEQRES 8 D 329 TYR PHE ARG VAL PHE MET GLU ASN LEU MET LYS LYS THR SEQRES 9 D 329 LYS GLN THR ILE SER LEU PHE LYS GLU GLY LYS GLU ARG SEQRES 10 D 329 MET TYR GLU GLU ASN SER GLN PRO ARG ARG ASN LEU THR SEQRES 11 D 329 LYS LEU SER LEU ILE PHE SER HIS MET LEU ALA GLU LEU SEQRES 12 D 329 LYS GLY ILE PHE PRO SER GLY LEU PHE GLN GLY ASP THR SEQRES 13 D 329 PHE ARG ILE THR LYS ALA ASP ALA ALA GLU PHE TRP ARG SEQRES 14 D 329 LYS ALA PHE GLY GLU LYS THR ILE VAL PRO TRP LYS SER SEQRES 15 D 329 PHE ARG GLN ALA LEU HIS GLU VAL HIS PRO ILE SER SER SEQRES 16 D 329 GLY LEU GLU ALA MET ALA LEU LYS SER THR ILE ASP LEU SEQRES 17 D 329 THR CYS ASN ASP TYR ILE SER VAL PHE GLU PHE ASP ILE SEQRES 18 D 329 PHE THR ARG LEU PHE GLN PRO TRP SER SER LEU LEU ARG SEQRES 19 D 329 ASN TRP ASN SER LEU ALA VAL THR HIS PRO GLY TYR MET SEQRES 20 D 329 ALA PHE LEU THR TYR ASP GLU VAL LYS ALA ARG LEU GLN SEQRES 21 D 329 LYS PHE ILE HIS LYS PRO GLY SER TYR ILE PHE ARG LEU SEQRES 22 D 329 SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY TYR VAL SEQRES 23 D 329 THR ALA ASP GLY ASN ILE LEU GLN THR ILE PRO HIS ASN SEQRES 24 D 329 LYS PRO LEU PHE GLN ALA LEU ILE ASP GLY PHE ARG GLU SEQRES 25 D 329 GLY PHE TYR LEU PHE PRO ASP GLY ARG ASN GLN ASN PRO SEQRES 26 D 329 ASP LEU THR GLY MODRES 3PLF PTR A 1003 TYR O-PHOSPHOTYROSINE MODRES 3PLF PTR C 1003 TYR O-PHOSPHOTYROSINE HET PTR A1003 16 HET PTR C1003 16 HET CA B 1 1 HET CL B 352 1 HET CL B 353 1 HET CL B 354 1 HET CA D 1 1 HET CL D 352 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 5 CA 2(CA 2+) FORMUL 6 CL 4(CL 1-) FORMUL 11 HOH *584(H2 O) HELIX 1 1 ASP B 52 GLN B 71 1 20 HELIX 2 2 TYR B 83 TYR B 102 1 20 HELIX 3 3 LYS B 105 GLU B 111 1 7 HELIX 4 4 ASN B 112 LYS B 137 1 26 HELIX 5 5 GLU B 138 GLU B 142 5 5 HELIX 6 6 SER B 145 PHE B 169 1 25 HELIX 7 7 PRO B 170 LEU B 173 5 4 HELIX 8 8 GLN B 175 PHE B 179 5 5 HELIX 9 9 LYS B 183 GLY B 195 1 13 HELIX 10 10 TRP B 202 GLU B 211 1 10 HELIX 11 11 SER B 217 ASP B 229 1 13 HELIX 12 12 VAL B 238 PHE B 248 1 11 HELIX 13 13 PRO B 250 SER B 252 5 3 HELIX 14 14 SER B 253 ALA B 262 1 10 HELIX 15 15 THR B 273 LYS B 283 1 11 HELIX 16 16 PRO B 323 GLU B 334 1 12 HELIX 17 17 ASP D 52 GLN D 71 1 20 HELIX 18 18 ASN D 72 ALA D 76 5 5 HELIX 19 19 TYR D 83 TYR D 102 1 20 HELIX 20 20 LYS D 105 GLU D 111 1 7 HELIX 21 21 ASN D 112 LYS D 137 1 26 HELIX 22 22 GLU D 138 GLU D 142 5 5 HELIX 23 23 SER D 145 PHE D 169 1 25 HELIX 24 24 PRO D 170 LEU D 173 5 4 HELIX 25 25 GLN D 175 PHE D 179 5 5 HELIX 26 26 LYS D 183 GLY D 195 1 13 HELIX 27 27 TRP D 202 GLU D 211 1 10 HELIX 28 28 SER D 217 ASP D 229 1 13 HELIX 29 29 VAL D 238 PHE D 248 1 11 HELIX 30 30 PRO D 250 SER D 252 5 3 HELIX 31 31 SER D 253 ALA D 262 1 10 HELIX 32 32 THR D 273 GLN D 282 1 10 HELIX 33 33 LYS D 283 ILE D 285 5 3 HELIX 34 34 PRO D 323 GLY D 335 1 13 SHEET 1 A 2 ILE B 199 PRO B 201 0 SHEET 2 A 2 TYR B 235 SER B 237 -1 O ILE B 236 N VAL B 200 SHEET 1 B 4 ILE B 314 THR B 317 0 SHEET 2 B 4 TRP B 303 VAL B 308 -1 N ILE B 305 O THR B 317 SHEET 3 B 4 SER B 290 LEU B 295 -1 N ARG B 294 O ALA B 304 SHEET 4 B 4 PHE B 339 PRO B 340 1 O PHE B 339 N TYR B 291 SHEET 1 C 2 ILE D 199 PRO D 201 0 SHEET 2 C 2 TYR D 235 SER D 237 -1 O ILE D 236 N VAL D 200 SHEET 1 D 4 ILE D 314 THR D 317 0 SHEET 2 D 4 TRP D 303 VAL D 308 -1 N ILE D 305 O THR D 317 SHEET 3 D 4 SER D 290 LEU D 295 -1 N ARG D 294 O ALA D 304 SHEET 4 D 4 PHE D 339 PRO D 340 1 O PHE D 339 N TYR D 291 LINK C ARG A1002 N PTR A1003 1555 1555 1.34 LINK C PTR A1003 N ASP A1004 1555 1555 1.32 LINK C ARG C1002 N PTR C1003 1555 1555 1.33 LINK C PTR C1003 N ASP C1004 1555 1555 1.32 LINK CA CA B 1 OD1 ASP B 229 1555 1555 2.35 LINK CA CA B 1 OG1 THR B 231 1555 1555 2.77 LINK CA CA B 1 OD1 ASN B 233 1555 1555 2.37 LINK CA CA B 1 O TYR B 235 1555 1555 2.33 LINK CA CA B 1 OE2 GLU B 240 1555 1555 2.49 LINK CA CA B 1 OE1 GLU B 240 1555 1555 2.55 LINK CA CA B 1 O HOH B 399 1555 1555 2.86 LINK CA CA D 1 OD1 ASP D 229 1555 1555 2.44 LINK CA CA D 1 OG1 THR D 231 1555 1555 2.65 LINK CA CA D 1 OD1 ASN D 233 1555 1555 2.41 LINK CA CA D 1 O TYR D 235 1555 1555 2.44 LINK CA CA D 1 OE2 GLU D 240 1555 1555 2.46 LINK CA CA D 1 OE1 GLU D 240 1555 1555 2.59 LINK CA CA D 1 O HOH D 403 1555 1555 2.77 CISPEP 1 PRO B 81 PRO B 82 0 1.50 CISPEP 2 GLN B 249 PRO B 250 0 3.73 CISPEP 3 PRO D 81 PRO D 82 0 2.17 CISPEP 4 GLN D 249 PRO D 250 0 6.32 SITE 1 AC1 6 ASP B 229 THR B 231 ASN B 233 TYR B 235 SITE 2 AC1 6 GLU B 240 HOH B 399 SITE 1 AC2 2 ARG B 343 ASN B 344 SITE 1 AC3 3 HIS B 320 ASN B 321 GLN D 249 SITE 1 AC4 6 ASP D 229 THR D 231 ASN D 233 TYR D 235 SITE 2 AC4 6 GLU D 240 HOH D 403 CRYST1 52.743 104.483 60.548 90.00 90.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018960 0.000000 0.000063 0.00000 SCALE2 0.000000 0.009571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016516 0.00000