HEADER TRANSFERASE 18-NOV-10 3PNB TITLE PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 IN COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DEPHOSPHO-COA PYROPHOSPHORYLASE, PANTETHEINE-PHOSPHATE COMPND 5 ADENYLYLTRANSFERASE, PPAT; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: COAD, KDTB, RV2965C, MT3043, MTCY349.22, U0002E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, ADENYLYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.WUBBEN,A.D.MESECAR REVDAT 2 21-FEB-24 3PNB 1 REMARK SEQADV REVDAT 1 22-JUN-11 3PNB 0 JRNL AUTH T.WUBBEN,A.D.MESECAR JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSISPHOSPHOPANTETHEINE JRNL TITL 2 ADENYLYLTRANSFERASE IN COMPLEX WITH THE FEEDBACK INHIBITOR JRNL TITL 3 COA REVEALS ONLY ONE ACTIVE-SITE CONFORMATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 541 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21543857 JRNL DOI 10.1107/S1744309111010761 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 53413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3820 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5141 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7006 ; 1.003 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 4.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;28.352 ;23.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 839 ;12.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;13.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 808 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3785 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3146 ; 0.419 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5098 ; 0.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 1.050 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1900 ; 1.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BASE, PH 8, 0.15 M REMARK 280 MAGNESIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -57.22950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -99.12440 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.22950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -99.12440 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.22950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -99.12440 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 114.45900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET D -19 REMARK 465 GLY D -18 REMARK 465 SER D -17 REMARK 465 SER D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 GLY D -7 REMARK 465 LEU D -6 REMARK 465 VAL D -5 REMARK 465 PRO D -4 REMARK 465 ARG D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 96 CA CB CG CD OE1 OE2 REMARK 480 GLU D 96 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 -167.70 -56.28 REMARK 500 ALA A 40 -33.43 -37.84 REMARK 500 LYS A 41 85.27 -64.27 REMARK 500 PRO B 39 -113.92 -67.44 REMARK 500 ALA B 40 45.43 -83.39 REMARK 500 LEU B 47 -71.53 -43.82 REMARK 500 ALA B 109 -1.49 -143.31 REMARK 500 ALA C 109 5.38 -151.46 REMARK 500 LEU C 156 -61.55 -106.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA D 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NBA RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANFERASE FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS IN COMPLEX WITH ADENOSINE-5'-[(ALPHA,BETA)-METHYLENO] REMARK 900 TRIPHOSPHATE (AMPCPP) REMARK 900 RELATED ID: 3NBK RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS IN COMPLEX WITH 4'-PHOSPHOPANTETHEINE DBREF 3PNB A 1 157 UNP P0A530 COAD_MYCTU 1 157 DBREF 3PNB B 1 157 UNP P0A530 COAD_MYCTU 1 157 DBREF 3PNB C 1 157 UNP P0A530 COAD_MYCTU 1 157 DBREF 3PNB D 1 157 UNP P0A530 COAD_MYCTU 1 157 SEQADV 3PNB MET A -19 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY A -18 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER A -17 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER A -16 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -15 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -14 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -13 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -12 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -11 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A -10 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER A -9 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER A -8 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY A -7 UNP P0A530 EXPRESSION TAG SEQADV 3PNB LEU A -6 UNP P0A530 EXPRESSION TAG SEQADV 3PNB VAL A -5 UNP P0A530 EXPRESSION TAG SEQADV 3PNB PRO A -4 UNP P0A530 EXPRESSION TAG SEQADV 3PNB ARG A -3 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY A -2 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER A -1 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS A 0 UNP P0A530 EXPRESSION TAG SEQADV 3PNB MET B -19 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY B -18 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER B -17 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER B -16 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -15 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -14 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -13 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -12 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -11 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B -10 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER B -9 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER B -8 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY B -7 UNP P0A530 EXPRESSION TAG SEQADV 3PNB LEU B -6 UNP P0A530 EXPRESSION TAG SEQADV 3PNB VAL B -5 UNP P0A530 EXPRESSION TAG SEQADV 3PNB PRO B -4 UNP P0A530 EXPRESSION TAG SEQADV 3PNB ARG B -3 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY B -2 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER B -1 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS B 0 UNP P0A530 EXPRESSION TAG SEQADV 3PNB MET C -19 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY C -18 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER C -17 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER C -16 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -15 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -14 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -13 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -12 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -11 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C -10 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER C -9 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER C -8 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY C -7 UNP P0A530 EXPRESSION TAG SEQADV 3PNB LEU C -6 UNP P0A530 EXPRESSION TAG SEQADV 3PNB VAL C -5 UNP P0A530 EXPRESSION TAG SEQADV 3PNB PRO C -4 UNP P0A530 EXPRESSION TAG SEQADV 3PNB ARG C -3 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY C -2 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER C -1 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS C 0 UNP P0A530 EXPRESSION TAG SEQADV 3PNB MET D -19 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY D -18 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER D -17 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER D -16 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -15 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -14 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -13 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -12 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -11 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D -10 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER D -9 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER D -8 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY D -7 UNP P0A530 EXPRESSION TAG SEQADV 3PNB LEU D -6 UNP P0A530 EXPRESSION TAG SEQADV 3PNB VAL D -5 UNP P0A530 EXPRESSION TAG SEQADV 3PNB PRO D -4 UNP P0A530 EXPRESSION TAG SEQADV 3PNB ARG D -3 UNP P0A530 EXPRESSION TAG SEQADV 3PNB GLY D -2 UNP P0A530 EXPRESSION TAG SEQADV 3PNB SER D -1 UNP P0A530 EXPRESSION TAG SEQADV 3PNB HIS D 0 UNP P0A530 EXPRESSION TAG SEQRES 1 A 177 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 177 LEU VAL PRO ARG GLY SER HIS MET THR GLY ALA VAL CYS SEQRES 3 A 177 PRO GLY SER PHE ASP PRO VAL THR LEU GLY HIS VAL ASP SEQRES 4 A 177 ILE PHE GLU ARG ALA ALA ALA GLN PHE ASP GLU VAL VAL SEQRES 5 A 177 VAL ALA ILE LEU VAL ASN PRO ALA LYS THR GLY MET PHE SEQRES 6 A 177 ASP LEU ASP GLU ARG ILE ALA MET VAL LYS GLU SER THR SEQRES 7 A 177 THR HIS LEU PRO ASN LEU ARG VAL GLN VAL GLY HIS GLY SEQRES 8 A 177 LEU VAL VAL ASP PHE VAL ARG SER CYS GLY MET THR ALA SEQRES 9 A 177 ILE VAL LYS GLY LEU ARG THR GLY THR ASP PHE GLU TYR SEQRES 10 A 177 GLU LEU GLN MET ALA GLN MET ASN LYS HIS ILE ALA GLY SEQRES 11 A 177 VAL ASP THR PHE PHE VAL ALA THR ALA PRO ARG TYR SER SEQRES 12 A 177 PHE VAL SER SER SER LEU ALA LYS GLU VAL ALA MET LEU SEQRES 13 A 177 GLY GLY ASP VAL SER GLU LEU LEU PRO GLU PRO VAL ASN SEQRES 14 A 177 ARG ARG LEU ARG ASP ARG LEU ASN SEQRES 1 B 177 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 177 LEU VAL PRO ARG GLY SER HIS MET THR GLY ALA VAL CYS SEQRES 3 B 177 PRO GLY SER PHE ASP PRO VAL THR LEU GLY HIS VAL ASP SEQRES 4 B 177 ILE PHE GLU ARG ALA ALA ALA GLN PHE ASP GLU VAL VAL SEQRES 5 B 177 VAL ALA ILE LEU VAL ASN PRO ALA LYS THR GLY MET PHE SEQRES 6 B 177 ASP LEU ASP GLU ARG ILE ALA MET VAL LYS GLU SER THR SEQRES 7 B 177 THR HIS LEU PRO ASN LEU ARG VAL GLN VAL GLY HIS GLY SEQRES 8 B 177 LEU VAL VAL ASP PHE VAL ARG SER CYS GLY MET THR ALA SEQRES 9 B 177 ILE VAL LYS GLY LEU ARG THR GLY THR ASP PHE GLU TYR SEQRES 10 B 177 GLU LEU GLN MET ALA GLN MET ASN LYS HIS ILE ALA GLY SEQRES 11 B 177 VAL ASP THR PHE PHE VAL ALA THR ALA PRO ARG TYR SER SEQRES 12 B 177 PHE VAL SER SER SER LEU ALA LYS GLU VAL ALA MET LEU SEQRES 13 B 177 GLY GLY ASP VAL SER GLU LEU LEU PRO GLU PRO VAL ASN SEQRES 14 B 177 ARG ARG LEU ARG ASP ARG LEU ASN SEQRES 1 C 177 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 177 LEU VAL PRO ARG GLY SER HIS MET THR GLY ALA VAL CYS SEQRES 3 C 177 PRO GLY SER PHE ASP PRO VAL THR LEU GLY HIS VAL ASP SEQRES 4 C 177 ILE PHE GLU ARG ALA ALA ALA GLN PHE ASP GLU VAL VAL SEQRES 5 C 177 VAL ALA ILE LEU VAL ASN PRO ALA LYS THR GLY MET PHE SEQRES 6 C 177 ASP LEU ASP GLU ARG ILE ALA MET VAL LYS GLU SER THR SEQRES 7 C 177 THR HIS LEU PRO ASN LEU ARG VAL GLN VAL GLY HIS GLY SEQRES 8 C 177 LEU VAL VAL ASP PHE VAL ARG SER CYS GLY MET THR ALA SEQRES 9 C 177 ILE VAL LYS GLY LEU ARG THR GLY THR ASP PHE GLU TYR SEQRES 10 C 177 GLU LEU GLN MET ALA GLN MET ASN LYS HIS ILE ALA GLY SEQRES 11 C 177 VAL ASP THR PHE PHE VAL ALA THR ALA PRO ARG TYR SER SEQRES 12 C 177 PHE VAL SER SER SER LEU ALA LYS GLU VAL ALA MET LEU SEQRES 13 C 177 GLY GLY ASP VAL SER GLU LEU LEU PRO GLU PRO VAL ASN SEQRES 14 C 177 ARG ARG LEU ARG ASP ARG LEU ASN SEQRES 1 D 177 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 177 LEU VAL PRO ARG GLY SER HIS MET THR GLY ALA VAL CYS SEQRES 3 D 177 PRO GLY SER PHE ASP PRO VAL THR LEU GLY HIS VAL ASP SEQRES 4 D 177 ILE PHE GLU ARG ALA ALA ALA GLN PHE ASP GLU VAL VAL SEQRES 5 D 177 VAL ALA ILE LEU VAL ASN PRO ALA LYS THR GLY MET PHE SEQRES 6 D 177 ASP LEU ASP GLU ARG ILE ALA MET VAL LYS GLU SER THR SEQRES 7 D 177 THR HIS LEU PRO ASN LEU ARG VAL GLN VAL GLY HIS GLY SEQRES 8 D 177 LEU VAL VAL ASP PHE VAL ARG SER CYS GLY MET THR ALA SEQRES 9 D 177 ILE VAL LYS GLY LEU ARG THR GLY THR ASP PHE GLU TYR SEQRES 10 D 177 GLU LEU GLN MET ALA GLN MET ASN LYS HIS ILE ALA GLY SEQRES 11 D 177 VAL ASP THR PHE PHE VAL ALA THR ALA PRO ARG TYR SER SEQRES 12 D 177 PHE VAL SER SER SER LEU ALA LYS GLU VAL ALA MET LEU SEQRES 13 D 177 GLY GLY ASP VAL SER GLU LEU LEU PRO GLU PRO VAL ASN SEQRES 14 D 177 ARG ARG LEU ARG ASP ARG LEU ASN HET COA A 162 48 HET COA B 162 48 HET COA C 162 48 HET COA D 162 48 HETNAM COA COENZYME A FORMUL 5 COA 4(C21 H36 N7 O16 P3 S) FORMUL 9 HOH *372(H2 O) HELIX 1 1 THR A 14 PHE A 28 1 15 HELIX 2 2 ASP A 46 THR A 58 1 13 HELIX 3 3 LEU A 72 CYS A 80 1 9 HELIX 4 4 ASP A 94 GLY A 110 1 17 HELIX 5 5 ALA A 119 SER A 123 5 5 HELIX 6 6 SER A 126 LEU A 136 1 11 HELIX 7 7 VAL A 140 LEU A 144 5 5 HELIX 8 8 PRO A 145 LEU A 156 1 12 HELIX 9 9 THR B 14 PHE B 28 1 15 HELIX 10 10 ASP B 46 THR B 58 1 13 HELIX 11 11 LEU B 72 CYS B 80 1 9 HELIX 12 12 ASP B 94 GLY B 110 1 17 HELIX 13 13 ALA B 119 SER B 123 5 5 HELIX 14 14 SER B 126 LEU B 136 1 11 HELIX 15 15 VAL B 140 LEU B 144 5 5 HELIX 16 16 PRO B 145 ARG B 155 1 11 HELIX 17 17 THR C 14 PHE C 28 1 15 HELIX 18 18 ASP C 46 THR C 58 1 13 HELIX 19 19 LEU C 72 CYS C 80 1 9 HELIX 20 20 ASP C 94 GLY C 110 1 17 HELIX 21 21 ALA C 119 SER C 123 5 5 HELIX 22 22 SER C 126 LEU C 136 1 11 HELIX 23 23 VAL C 140 LEU C 144 5 5 HELIX 24 24 PRO C 145 ASN C 157 1 13 HELIX 25 25 THR D 14 PHE D 28 1 15 HELIX 26 26 ASP D 46 THR D 58 1 13 HELIX 27 27 LEU D 72 CYS D 80 1 9 HELIX 28 28 ASP D 94 GLY D 110 1 17 HELIX 29 29 ALA D 119 SER D 123 5 5 HELIX 30 30 SER D 126 MET D 135 1 10 HELIX 31 31 VAL D 140 LEU D 144 5 5 HELIX 32 32 PRO D 145 ARG D 155 1 11 SHEET 1 A 3 GLY A 3 GLY A 8 0 SHEET 2 A 3 GLU A 30 LEU A 36 1 O VAL A 32 N CYS A 6 SHEET 3 A 3 LEU A 64 GLY A 69 1 O ARG A 65 N VAL A 33 SHEET 1 B 2 ALA A 84 LEU A 89 0 SHEET 2 B 2 ASP A 112 ALA A 117 1 O PHE A 114 N ILE A 85 SHEET 1 C 3 GLY B 3 GLY B 8 0 SHEET 2 C 3 GLU B 30 LEU B 36 1 O VAL B 32 N CYS B 6 SHEET 3 C 3 LEU B 64 GLY B 69 1 O ARG B 65 N VAL B 33 SHEET 1 D 2 ALA B 84 LEU B 89 0 SHEET 2 D 2 ASP B 112 ALA B 117 1 O PHE B 114 N ILE B 85 SHEET 1 E 3 GLY C 3 GLY C 8 0 SHEET 2 E 3 GLU C 30 LEU C 36 1 O VAL C 32 N CYS C 6 SHEET 3 E 3 LEU C 64 GLY C 69 1 O ARG C 65 N VAL C 33 SHEET 1 F 2 ALA C 84 LEU C 89 0 SHEET 2 F 2 ASP C 112 ALA C 117 1 O PHE C 114 N ILE C 85 SHEET 1 G 3 GLY D 3 GLY D 8 0 SHEET 2 G 3 GLU D 30 ILE D 35 1 O VAL D 32 N CYS D 6 SHEET 3 G 3 LEU D 64 VAL D 68 1 O GLN D 67 N VAL D 33 SHEET 1 H 2 ALA D 84 LEU D 89 0 SHEET 2 H 2 ASP D 112 ALA D 117 1 O PHE D 114 N ILE D 85 CISPEP 1 ASP A 11 PRO A 12 0 -3.80 CISPEP 2 ASP B 11 PRO B 12 0 -2.27 CISPEP 3 ASP C 11 PRO C 12 0 -2.26 CISPEP 4 ASP D 11 PRO D 12 0 -2.46 SITE 1 AC1 18 GLY A 8 SER A 9 GLY A 71 LEU A 72 SITE 2 AC1 18 VAL A 73 LYS A 87 ASP A 94 TYR A 97 SITE 3 AC1 18 ASN A 105 SER A 128 GLU A 132 HOH A 158 SITE 4 AC1 18 HOH A 160 HOH A 167 HOH A 186 HOH A 203 SITE 5 AC1 18 HOH A 212 HOH A 272 SITE 1 AC2 17 GLY B 8 SER B 9 GLY B 71 LEU B 72 SITE 2 AC2 17 VAL B 73 LYS B 87 ASP B 94 TYR B 97 SITE 3 AC2 17 ASN B 105 SER B 128 GLU B 132 HOH B 167 SITE 4 AC2 17 HOH B 172 HOH B 190 HOH B 198 HOH B 264 SITE 5 AC2 17 HOH B 301 SITE 1 AC3 19 GLY C 8 SER C 9 LEU C 36 GLY C 71 SITE 2 AC3 19 LEU C 72 VAL C 73 ASP C 94 TYR C 97 SITE 3 AC3 19 ASN C 105 SER C 128 GLU C 132 HOH C 166 SITE 4 AC3 19 HOH C 173 HOH C 181 HOH C 182 HOH C 189 SITE 5 AC3 19 HOH C 233 HOH C 265 HOH C 281 SITE 1 AC4 19 GLY D 8 SER D 9 GLY D 71 LEU D 72 SITE 2 AC4 19 VAL D 73 LYS D 87 ASP D 94 TYR D 97 SITE 3 AC4 19 ASN D 105 SER D 128 GLU D 132 HOH D 169 SITE 4 AC4 19 HOH D 170 HOH D 178 HOH D 186 HOH D 230 SITE 5 AC4 19 HOH D 295 HOH D 555 HOH D 565 CRYST1 114.459 114.459 134.470 90.00 90.00 120.00 P 3 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008737 0.005044 0.000000 0.00000 SCALE2 0.000000 0.010088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007437 0.00000