HEADER HYDROLASE 19-NOV-10 3PNU TITLE 2.4 ANGSTROM CRYSTAL STRUCTURE OF DIHYDROOROTASE (PYRC) FROM TITLE 2 CAMPYLOBACTER JEJUNI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: CJ0259, PYRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TIM BARREL, DIHYDROOROTASE, ZINC BINDING, HYDROLASE, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,L.PAPAZISI, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 06-DEC-23 3PNU 1 REMARK REVDAT 3 06-SEP-23 3PNU 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3PNU 1 REMARK REVDAT 1 01-DEC-10 3PNU 0 JRNL AUTH G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, JRNL AUTH 2 L.PAPAZISI,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.4 ANGSTROM CRYSTAL STRUCTURE OF DIHYDROOROTASE (PYRC) FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 3.09000 REMARK 3 B33 (A**2) : -4.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5656 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3859 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7654 ; 1.460 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9511 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 683 ; 2.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;27.512 ;25.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1049 ; 9.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 9.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 843 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6172 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1066 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3419 ; 1.201 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1344 ; 0.263 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5549 ; 2.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2237 ; 3.186 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2105 ; 4.970 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.7 MG/ML, 0.25M SODIUM REMARK 280 CLORIDE, TRIS-HCL (PH 8.3); SCREEN: PACT (F9), 0.2M POTASSIUM/ REMARK 280 SODIUM TARTRATE, 0.1M BIS TRIS PROPANE (PH 6.5), 20% W/V PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.76000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.43900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.40100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.43900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.76000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.40100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 ASP A 244 REMARK 465 THR A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 CYS A 248 REMARK 465 CYS A 249 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 SER B 102 REMARK 465 ASN B 103 REMARK 465 GLY B 104 REMARK 465 GLY B 105 REMARK 465 VAL B 106 REMARK 465 THR B 245 REMARK 465 LYS B 246 REMARK 465 GLU B 247 REMARK 465 CYS B 248 REMARK 465 CYS B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A -4 -169.76 -104.57 REMARK 500 GLN A -3 -69.18 -10.24 REMARK 500 ASN A -1 82.26 -53.76 REMARK 500 ARG A 14 -135.51 57.24 REMARK 500 ASN A 16 -128.66 49.48 REMARK 500 LEU A 43 108.25 -59.76 REMARK 500 LYS A 61 -124.32 64.46 REMARK 500 ASN A 101 70.68 66.30 REMARK 500 HIS A 165 68.49 23.33 REMARK 500 LYS A 213 -132.00 -114.26 REMARK 500 TYR A 229 125.28 -38.31 REMARK 500 SER A 273 -152.67 -147.88 REMARK 500 SER A 283 -53.53 -150.77 REMARK 500 GLU A 306 151.00 -39.42 REMARK 500 ASP A 315 -166.74 -177.46 REMARK 500 MET A 324 14.90 59.90 REMARK 500 LYS A 334 87.79 -65.53 REMARK 500 HIS B 10 96.48 -162.65 REMARK 500 ARG B 14 -152.21 51.29 REMARK 500 ASN B 16 -130.48 52.80 REMARK 500 ASP B 62 33.52 -158.55 REMARK 500 ASP B 136 -167.91 -76.28 REMARK 500 HIS B 165 69.99 30.14 REMARK 500 LYS B 213 -129.15 -107.50 REMARK 500 TYR B 229 127.26 -37.77 REMARK 500 CYS B 251 -27.66 -163.25 REMARK 500 SER B 273 -141.37 -159.33 REMARK 500 SER B 283 -60.92 -151.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 337 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 10 NE2 REMARK 620 2 HIS A 12 NE2 115.6 REMARK 620 3 KCX A 92 OQ2 89.0 88.9 REMARK 620 4 ASP A 237 OD1 79.8 95.4 168.8 REMARK 620 5 HOH A 447 O 109.3 131.0 110.8 74.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 336 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 92 OQ1 REMARK 620 2 HIS A 131 ND1 101.9 REMARK 620 3 HIS A 165 NE2 112.0 96.9 REMARK 620 4 HOH A 447 O 123.5 127.2 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 337 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 10 NE2 REMARK 620 2 HIS B 12 NE2 119.4 REMARK 620 3 KCX B 92 OQ2 90.5 96.0 REMARK 620 4 ASP B 237 OD1 87.0 86.9 176.9 REMARK 620 5 HOH B 466 O 119.5 121.0 85.2 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 336 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 92 OQ1 REMARK 620 2 HIS B 131 ND1 100.5 REMARK 620 3 HIS B 165 NE2 118.2 105.2 REMARK 620 4 HOH B 466 O 95.0 126.8 111.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90750 RELATED DB: TARGETDB DBREF 3PNU A 1 335 UNP Q0PBP6 Q0PBP6_CAMJE 1 335 DBREF 3PNU B 1 335 UNP Q0PBP6 Q0PBP6_CAMJE 1 335 SEQADV 3PNU MET A -23 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -22 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -21 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -20 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -19 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -18 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS A -17 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER A -16 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER A -15 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLY A -14 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU VAL A -13 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASP A -12 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU LEU A -11 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLY A -10 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU THR A -9 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLU A -8 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASN A -7 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU LEU A -6 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU TYR A -5 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU PHE A -4 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLN A -3 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER A -2 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASN A -1 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ALA A 0 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU MET B -23 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -22 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -21 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -20 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -19 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -18 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU HIS B -17 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER B -16 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER B -15 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLY B -14 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU VAL B -13 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASP B -12 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU LEU B -11 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLY B -10 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU THR B -9 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLU B -8 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASN B -7 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU LEU B -6 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU TYR B -5 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU PHE B -4 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU GLN B -3 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU SER B -2 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ASN B -1 UNP Q0PBP6 EXPRESSION TAG SEQADV 3PNU ALA B 0 UNP Q0PBP6 EXPRESSION TAG SEQRES 1 A 359 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 359 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 A 359 LEU LYS ASN PRO LEU ASP MET HIS LEU HIS LEU ARG ASP SEQRES 4 A 359 ASN GLN MET LEU GLU LEU ILE ALA PRO LEU SER ALA ARG SEQRES 5 A 359 ASP PHE CYS ALA ALA VAL ILE MET PRO ASN LEU ILE PRO SEQRES 6 A 359 PRO LEU CYS ASN LEU GLU ASP LEU LYS ALA TYR LYS MET SEQRES 7 A 359 ARG ILE LEU LYS ALA CYS LYS ASP GLU ASN PHE THR PRO SEQRES 8 A 359 LEU MET THR LEU PHE PHE LYS ASN TYR ASP GLU LYS PHE SEQRES 9 A 359 LEU TYR SER ALA LYS ASP GLU ILE PHE GLY ILE KCX LEU SEQRES 10 A 359 TYR PRO ALA GLY ILE THR THR ASN SER ASN GLY GLY VAL SEQRES 11 A 359 SER SER PHE ASP ILE GLU TYR LEU LYS PRO THR LEU GLU SEQRES 12 A 359 ALA MET SER ASP LEU ASN ILE PRO LEU LEU VAL HIS GLY SEQRES 13 A 359 GLU THR ASN ASP PHE VAL MET ASP ARG GLU SER ASN PHE SEQRES 14 A 359 ALA LYS ILE TYR GLU LYS LEU ALA LYS HIS PHE PRO ARG SEQRES 15 A 359 LEU LYS ILE VAL MET GLU HIS ILE THR THR LYS THR LEU SEQRES 16 A 359 CYS GLU LEU LEU LYS ASP TYR GLU ASN LEU TYR ALA THR SEQRES 17 A 359 ILE THR LEU HIS HIS LEU ILE ILE THR LEU ASP ASP VAL SEQRES 18 A 359 ILE GLY GLY LYS MET ASN PRO HIS LEU PHE CYS LYS PRO SEQRES 19 A 359 ILE ALA LYS ARG TYR GLU ASP LYS GLU ALA LEU CYS GLU SEQRES 20 A 359 LEU ALA PHE SER GLY TYR GLU LYS VAL MET PHE GLY SER SEQRES 21 A 359 ASP SER ALA PRO HIS PRO LYS ASP THR LYS GLU CYS CYS SEQRES 22 A 359 GLY CYS ALA ALA GLY VAL PHE SER ALA PRO VAL ILE LEU SEQRES 23 A 359 PRO VAL LEU ALA GLU LEU PHE LYS GLN ASN SER SER GLU SEQRES 24 A 359 GLU ASN LEU GLN LYS PHE LEU SER ASP ASN THR CYS LYS SEQRES 25 A 359 ILE TYR ASP LEU LYS PHE LYS GLU ASP LYS ILE LEU THR SEQRES 26 A 359 LEU GLU GLU LYS GLU TRP GLN VAL PRO ASN VAL TYR GLU SEQRES 27 A 359 ASP LYS TYR ASN GLN VAL VAL PRO TYR MET ALA GLY GLU SEQRES 28 A 359 ILE LEU LYS PHE GLN LEU LYS HIS SEQRES 1 B 359 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 359 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 B 359 LEU LYS ASN PRO LEU ASP MET HIS LEU HIS LEU ARG ASP SEQRES 4 B 359 ASN GLN MET LEU GLU LEU ILE ALA PRO LEU SER ALA ARG SEQRES 5 B 359 ASP PHE CYS ALA ALA VAL ILE MET PRO ASN LEU ILE PRO SEQRES 6 B 359 PRO LEU CYS ASN LEU GLU ASP LEU LYS ALA TYR LYS MET SEQRES 7 B 359 ARG ILE LEU LYS ALA CYS LYS ASP GLU ASN PHE THR PRO SEQRES 8 B 359 LEU MET THR LEU PHE PHE LYS ASN TYR ASP GLU LYS PHE SEQRES 9 B 359 LEU TYR SER ALA LYS ASP GLU ILE PHE GLY ILE KCX LEU SEQRES 10 B 359 TYR PRO ALA GLY ILE THR THR ASN SER ASN GLY GLY VAL SEQRES 11 B 359 SER SER PHE ASP ILE GLU TYR LEU LYS PRO THR LEU GLU SEQRES 12 B 359 ALA MET SER ASP LEU ASN ILE PRO LEU LEU VAL HIS GLY SEQRES 13 B 359 GLU THR ASN ASP PHE VAL MET ASP ARG GLU SER ASN PHE SEQRES 14 B 359 ALA LYS ILE TYR GLU LYS LEU ALA LYS HIS PHE PRO ARG SEQRES 15 B 359 LEU LYS ILE VAL MET GLU HIS ILE THR THR LYS THR LEU SEQRES 16 B 359 CYS GLU LEU LEU LYS ASP TYR GLU ASN LEU TYR ALA THR SEQRES 17 B 359 ILE THR LEU HIS HIS LEU ILE ILE THR LEU ASP ASP VAL SEQRES 18 B 359 ILE GLY GLY LYS MET ASN PRO HIS LEU PHE CYS LYS PRO SEQRES 19 B 359 ILE ALA LYS ARG TYR GLU ASP LYS GLU ALA LEU CYS GLU SEQRES 20 B 359 LEU ALA PHE SER GLY TYR GLU LYS VAL MET PHE GLY SER SEQRES 21 B 359 ASP SER ALA PRO HIS PRO LYS ASP THR LYS GLU CYS CYS SEQRES 22 B 359 GLY CYS ALA ALA GLY VAL PHE SER ALA PRO VAL ILE LEU SEQRES 23 B 359 PRO VAL LEU ALA GLU LEU PHE LYS GLN ASN SER SER GLU SEQRES 24 B 359 GLU ASN LEU GLN LYS PHE LEU SER ASP ASN THR CYS LYS SEQRES 25 B 359 ILE TYR ASP LEU LYS PHE LYS GLU ASP LYS ILE LEU THR SEQRES 26 B 359 LEU GLU GLU LYS GLU TRP GLN VAL PRO ASN VAL TYR GLU SEQRES 27 B 359 ASP LYS TYR ASN GLN VAL VAL PRO TYR MET ALA GLY GLU SEQRES 28 B 359 ILE LEU LYS PHE GLN LEU LYS HIS MODRES 3PNU KCX A 92 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3PNU KCX B 92 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 92 12 HET KCX B 92 12 HET ZN A 336 1 HET ZN A 337 1 HET PO4 A 338 5 HET ZN B 336 1 HET ZN B 337 1 HET PO4 B 338 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 9 HOH *258(H2 O) HELIX 1 1 ASP A 15 ARG A 28 1 14 HELIX 2 2 ASN A 45 LYS A 61 1 17 HELIX 3 3 ASP A 77 LYS A 85 1 9 HELIX 4 4 ASP A 110 LEU A 124 1 15 HELIX 5 5 PHE A 137 ARG A 141 5 5 HELIX 6 6 GLU A 142 ASN A 144 5 3 HELIX 7 7 PHE A 145 PHE A 156 1 12 HELIX 8 8 THR A 168 TYR A 178 1 11 HELIX 9 9 LEU A 187 ILE A 191 5 5 HELIX 10 10 THR A 193 GLY A 199 1 7 HELIX 11 11 ASN A 203 PHE A 207 5 5 HELIX 12 12 ARG A 214 SER A 227 1 14 HELIX 13 13 SER A 257 PRO A 259 5 3 HELIX 14 14 VAL A 260 SER A 273 1 14 HELIX 15 15 SER A 274 SER A 283 1 10 HELIX 16 16 SER A 283 ASP A 291 1 9 HELIX 17 17 ASP B 15 ARG B 28 1 14 HELIX 18 18 ASN B 45 LYS B 61 1 17 HELIX 19 19 ASP B 77 LYS B 85 1 9 HELIX 20 20 LEU B 114 LEU B 124 1 11 HELIX 21 21 GLU B 142 ASN B 144 5 3 HELIX 22 22 PHE B 145 PHE B 156 1 12 HELIX 23 23 THR B 168 LYS B 176 1 9 HELIX 24 24 LEU B 187 ILE B 191 5 5 HELIX 25 25 THR B 193 GLY B 199 1 7 HELIX 26 26 ASN B 203 PHE B 207 5 5 HELIX 27 27 ARG B 214 SER B 227 1 14 HELIX 28 28 SER B 257 PRO B 259 5 3 HELIX 29 29 VAL B 260 SER B 273 1 14 HELIX 30 30 SER B 274 SER B 283 1 10 HELIX 31 31 SER B 283 ASP B 291 1 9 SHEET 1 A 3 MET A 1 LYS A 4 0 SHEET 2 A 3 ILE A 299 GLU A 303 -1 O LEU A 300 N LEU A 3 SHEET 3 A 3 GLN A 332 LEU A 333 -1 O GLN A 332 N GLU A 303 SHEET 1 B 8 LEU A 7 LEU A 11 0 SHEET 2 B 8 ALA A 32 ILE A 35 1 O VAL A 34 N ASP A 8 SHEET 3 B 8 THR A 66 PHE A 72 1 O LEU A 68 N ALA A 33 SHEET 4 B 8 GLY A 90 LEU A 93 1 O KCX A 92 N LEU A 71 SHEET 5 B 8 LEU A 128 VAL A 130 1 O LEU A 129 N LEU A 93 SHEET 6 B 8 ILE A 161 MET A 163 1 O VAL A 162 N LEU A 128 SHEET 7 B 8 LEU A 181 ILE A 185 1 O TYR A 182 N MET A 163 SHEET 8 B 8 VAL A 232 PHE A 234 1 O MET A 233 N ALA A 183 SHEET 1 C 2 TRP A 307 GLN A 308 0 SHEET 2 C 2 ILE A 328 LEU A 329 -1 O LEU A 329 N TRP A 307 SHEET 1 D 2 TYR A 313 GLU A 314 0 SHEET 2 D 2 GLN A 319 VAL A 320 -1 O VAL A 320 N TYR A 313 SHEET 1 E 3 MET B 1 LYS B 4 0 SHEET 2 E 3 ILE B 299 GLN B 308 -1 O LEU B 302 N MET B 1 SHEET 3 E 3 ILE B 328 GLN B 332 -1 O GLN B 332 N GLU B 303 SHEET 1 F 8 LEU B 7 LEU B 11 0 SHEET 2 F 8 ALA B 32 ILE B 35 1 O VAL B 34 N LEU B 11 SHEET 3 F 8 THR B 66 PHE B 72 1 O LEU B 68 N ALA B 33 SHEET 4 F 8 GLY B 90 LEU B 93 1 O KCX B 92 N LEU B 71 SHEET 5 F 8 LEU B 128 VAL B 130 1 O LEU B 129 N LEU B 93 SHEET 6 F 8 ILE B 161 MET B 163 1 O VAL B 162 N LEU B 128 SHEET 7 F 8 LEU B 181 ILE B 185 1 O TYR B 182 N MET B 163 SHEET 8 F 8 VAL B 232 PHE B 234 1 O MET B 233 N ALA B 183 SHEET 1 G 2 TYR B 313 GLU B 314 0 SHEET 2 G 2 GLN B 319 VAL B 320 -1 O VAL B 320 N TYR B 313 LINK C ILE A 91 N KCX A 92 1555 1555 1.34 LINK C KCX A 92 N LEU A 93 1555 1555 1.34 LINK C ILE B 91 N KCX B 92 1555 1555 1.33 LINK C KCX B 92 N LEU B 93 1555 1555 1.32 LINK NE2 HIS A 10 ZN ZN A 337 1555 1555 2.11 LINK NE2 HIS A 12 ZN ZN A 337 1555 1555 2.22 LINK OQ1 KCX A 92 ZN ZN A 336 1555 1555 1.97 LINK OQ2 KCX A 92 ZN ZN A 337 1555 1555 2.07 LINK ND1 HIS A 131 ZN ZN A 336 1555 1555 2.07 LINK NE2 HIS A 165 ZN ZN A 336 1555 1555 2.04 LINK OD1 ASP A 237 ZN ZN A 337 1555 1555 2.15 LINK ZN ZN A 336 O HOH A 447 1555 1555 2.02 LINK ZN ZN A 337 O HOH A 447 1555 1555 2.41 LINK NE2 HIS B 10 ZN ZN B 337 1555 1555 2.06 LINK NE2 HIS B 12 ZN ZN B 337 1555 1555 2.05 LINK OQ1 KCX B 92 ZN ZN B 336 1555 1555 1.83 LINK OQ2 KCX B 92 ZN ZN B 337 1555 1555 1.94 LINK ND1 HIS B 131 ZN ZN B 336 1555 1555 2.12 LINK NE2 HIS B 165 ZN ZN B 336 1555 1555 2.09 LINK OD1 ASP B 237 ZN ZN B 337 1555 1555 2.25 LINK ZN ZN B 336 O HOH B 466 1555 1555 2.00 LINK ZN ZN B 337 O HOH B 466 1555 1555 1.86 CISPEP 1 ILE A 40 PRO A 41 0 -1.03 CISPEP 2 LYS A 209 PRO A 210 0 -1.24 CISPEP 3 GLY A 250 CYS A 251 0 -0.09 CISPEP 4 ILE B 40 PRO B 41 0 0.32 CISPEP 5 GLU B 63 ASN B 64 0 3.15 CISPEP 6 LYS B 209 PRO B 210 0 -1.48 SITE 1 AC1 5 KCX A 92 HIS A 131 HIS A 165 ZN A 337 SITE 2 AC1 5 HOH A 447 SITE 1 AC2 6 HIS A 10 HIS A 12 KCX A 92 ASP A 237 SITE 2 AC2 6 ZN A 336 HOH A 447 SITE 1 AC3 2 GLU A 78 TYR A 82 SITE 1 AC4 5 KCX B 92 HIS B 131 HIS B 165 ZN B 337 SITE 2 AC4 5 HOH B 466 SITE 1 AC5 6 HIS B 10 HIS B 12 KCX B 92 ASP B 237 SITE 2 AC5 6 ZN B 336 HOH B 466 SITE 1 AC6 2 GLU B 78 TYR B 82 CRYST1 69.520 80.802 154.878 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006457 0.00000