HEADER DNA BINDING PROTEIN/DNA 23-NOV-10 3POV TITLE CRYSTAL STRUCTURE OF A SOX-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 37; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*GP*GP*GP*AP*TP*CP*CP*TP*CP*CP*CP*AP*GP*TP*CP*GP*AP*CP*C)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*GP*GP*TP*CP*GP*AP*CP*TP*AP*GP*GP*AP*GP*GP*AP*TP*CP*CP*C)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 TYPE M; SOURCE 3 ORGANISM_TAXID: 435895; SOURCE 4 GENE: ORF37; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM6T1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: DNA SYNTHESISED BY EUROGENTEC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: DNA SYNTHESISED BY EUROGENTEC KEYWDS TYPE II RESTRICTION ENDONUCLEASE SUPERFAMILY, NUCLEASE, KEYWDS 2 NUCLEUS/CYTOPLASM, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.BAGNERIS,T.E.BARRETT REVDAT 2 01-NOV-23 3POV 1 REMARK SEQADV REVDAT 1 21-SEP-11 3POV 0 JRNL AUTH C.BAGNERIS,L.C.BRIGGS,R.SAVVA,B.EBRAHIMI,T.E.BARRETT JRNL TITL CRYSTAL STRUCTURE OF A KSHV-SOX-DNA COMPLEX: INSIGHTS INTO JRNL TITL 2 THE MOLECULAR MECHANISMS UNDERLYING DNASE ACTIVITY AND HOST JRNL TITL 3 SHUTOFF JRNL REF NUCLEIC ACIDS RES. V. 39 5744 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21421561 JRNL DOI 10.1093/NAR/GKR111 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.660 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 22579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.1069 - 4.9994 0.94 2737 155 0.2035 0.2796 REMARK 3 2 4.9994 - 3.9684 0.97 2683 156 0.1628 0.1971 REMARK 3 3 3.9684 - 3.4668 0.98 2687 137 0.1779 0.2247 REMARK 3 4 3.4668 - 3.1498 0.98 2708 128 0.1889 0.2440 REMARK 3 5 3.1498 - 2.9241 0.99 2665 136 0.2148 0.3168 REMARK 3 6 2.9241 - 2.7517 0.99 2674 145 0.2242 0.3276 REMARK 3 7 2.7517 - 2.6139 0.98 2612 155 0.2496 0.3191 REMARK 3 8 2.6139 - 2.5001 0.99 2655 146 0.2716 0.3379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 61.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.19100 REMARK 3 B22 (A**2) : -17.51800 REMARK 3 B33 (A**2) : 20.70910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4432 REMARK 3 ANGLE : 0.760 6182 REMARK 3 CHIRALITY : 0.045 686 REMARK 3 PLANARITY : 0.003 658 REMARK 3 DIHEDRAL : 21.132 1594 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:34) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8958 -3.3525 -16.5227 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.5767 REMARK 3 T33: 0.8390 T12: -0.0748 REMARK 3 T13: 0.0228 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.3397 L22: 2.1568 REMARK 3 L33: 1.8530 L12: -0.3124 REMARK 3 L13: -0.6027 L23: 0.2507 REMARK 3 S TENSOR REMARK 3 S11: -0.3106 S12: -0.4965 S13: 0.1498 REMARK 3 S21: 0.6142 S22: -0.2880 S23: -1.0329 REMARK 3 S31: 0.2116 S32: 0.8978 S33: -0.0738 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:127) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5342 -16.1409 -14.5618 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.2499 REMARK 3 T33: 0.2975 T12: -0.0229 REMARK 3 T13: -0.0181 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.4565 L22: 1.4253 REMARK 3 L33: 0.7680 L12: -0.0841 REMARK 3 L13: 0.4519 L23: -0.3418 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: -0.0044 S13: -0.3594 REMARK 3 S21: 0.2676 S22: 0.1190 S23: -0.2563 REMARK 3 S31: 0.2015 S32: 0.0229 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 128:189) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6729 4.7270 -18.3232 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.3281 REMARK 3 T33: 0.4189 T12: -0.0594 REMARK 3 T13: 0.0215 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.1792 L22: 0.4024 REMARK 3 L33: -0.2322 L12: -0.4408 REMARK 3 L13: 0.6356 L23: -0.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: -0.0320 S13: -0.1819 REMARK 3 S21: -0.0226 S22: 0.1554 S23: -0.4028 REMARK 3 S31: -0.1167 S32: 0.1481 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 190:224) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7091 3.7933 -5.8476 REMARK 3 T TENSOR REMARK 3 T11: 0.3761 T22: 0.2617 REMARK 3 T33: 0.1801 T12: 0.0028 REMARK 3 T13: 0.0926 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.2349 L22: 0.4798 REMARK 3 L33: 0.1159 L12: -0.0927 REMARK 3 L13: -0.1058 L23: -0.3620 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: 0.0431 S13: -0.2139 REMARK 3 S21: 0.6298 S22: 0.2526 S23: 0.1650 REMARK 3 S31: 0.3434 S32: 0.1436 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 225:307) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6964 22.2681 -15.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.1620 REMARK 3 T33: 0.3180 T12: 0.0173 REMARK 3 T13: 0.0675 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8150 L22: 1.0467 REMARK 3 L33: 0.7207 L12: 0.6018 REMARK 3 L13: 0.6557 L23: 0.7647 REMARK 3 S TENSOR REMARK 3 S11: -0.1524 S12: 0.1221 S13: 0.1580 REMARK 3 S21: -0.0087 S22: -0.0190 S23: 0.5531 REMARK 3 S31: -0.1810 S32: 0.0957 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 308:322) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6125 20.6511 -27.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.3677 T22: 0.4860 REMARK 3 T33: 0.7227 T12: 0.0120 REMARK 3 T13: -0.0869 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.6121 L22: 0.6801 REMARK 3 L33: 2.8684 L12: 0.5954 REMARK 3 L13: -0.8842 L23: -1.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.1850 S12: 0.2510 S13: 0.5315 REMARK 3 S21: 0.0566 S22: 0.4223 S23: 0.7251 REMARK 3 S31: -0.2903 S32: -0.4773 S33: 0.5239 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 323:390) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4999 12.2324 -13.2631 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.2748 REMARK 3 T33: 0.3945 T12: -0.0297 REMARK 3 T13: 0.0953 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.5400 L22: 1.0180 REMARK 3 L33: 0.4539 L12: -0.8049 REMARK 3 L13: 0.6695 L23: -0.4165 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: -0.2021 S13: -0.2965 REMARK 3 S21: 0.2805 S22: 0.3494 S23: 0.6449 REMARK 3 S31: 0.1238 S32: -0.0161 S33: 0.0137 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 391:443) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3297 21.6675 -7.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.2885 REMARK 3 T33: 0.2751 T12: 0.0215 REMARK 3 T13: 0.0580 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3091 L22: 0.2362 REMARK 3 L33: 0.7690 L12: -0.3311 REMARK 3 L13: 0.7230 L23: -0.3798 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.0303 S13: 0.0179 REMARK 3 S21: 0.4030 S22: -0.0734 S23: 0.0621 REMARK 3 S31: -0.0050 S32: 0.0799 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 444:461) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8523 -5.4802 -23.6660 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.3451 REMARK 3 T33: 0.5781 T12: -0.0736 REMARK 3 T13: -0.1419 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.1148 L22: 0.3549 REMARK 3 L33: 0.4648 L12: 0.0384 REMARK 3 L13: 0.2029 L23: -0.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: -0.3789 S13: -0.4573 REMARK 3 S21: -0.5604 S22: 0.0155 S23: 0.7271 REMARK 3 S31: 0.3873 S32: 0.1693 S33: -0.0082 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 462:481) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2277 -15.3932 -29.3226 REMARK 3 T TENSOR REMARK 3 T11: 0.6984 T22: 0.4003 REMARK 3 T33: 0.5536 T12: 0.0669 REMARK 3 T13: 0.0279 T23: -0.1646 REMARK 3 L TENSOR REMARK 3 L11: 0.0443 L22: 0.0578 REMARK 3 L33: 0.0535 L12: -0.0062 REMARK 3 L13: 0.0397 L23: 0.0993 REMARK 3 S TENSOR REMARK 3 S11: 0.8334 S12: 0.5484 S13: -0.6356 REMARK 3 S21: -0.0915 S22: -0.3908 S23: 0.8749 REMARK 3 S31: 0.1874 S32: 0.0644 S33: 0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5335 17.8070 -23.1500 REMARK 3 T TENSOR REMARK 3 T11: 0.4141 T22: 0.2847 REMARK 3 T33: 0.5511 T12: -0.0998 REMARK 3 T13: -0.1454 T23: 0.2057 REMARK 3 L TENSOR REMARK 3 L11: 0.0221 L22: 0.0335 REMARK 3 L33: -0.0050 L12: 0.0315 REMARK 3 L13: 0.0258 L23: -0.0328 REMARK 3 S TENSOR REMARK 3 S11: -0.6069 S12: 0.2047 S13: 0.0825 REMARK 3 S21: 0.5988 S22: -0.2884 S23: 0.7176 REMARK 3 S31: -0.3958 S32: 0.3745 S33: 0.0004 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 5:12) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0446 19.3080 -39.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.6766 T22: 1.0769 REMARK 3 T33: 0.6125 T12: 0.0143 REMARK 3 T13: -0.4135 T23: 0.1546 REMARK 3 L TENSOR REMARK 3 L11: 0.7254 L22: 0.4087 REMARK 3 L33: 1.3642 L12: 0.2738 REMARK 3 L13: -0.5359 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.9897 S13: -0.4923 REMARK 3 S21: 0.0924 S22: 0.6640 S23: 0.9775 REMARK 3 S31: -0.8257 S32: 0.8906 S33: 0.1043 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 13:20) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9733 21.9154 -52.5552 REMARK 3 T TENSOR REMARK 3 T11: 0.9195 T22: 1.4153 REMARK 3 T33: 1.0745 T12: 0.3276 REMARK 3 T13: -0.6342 T23: 0.2630 REMARK 3 L TENSOR REMARK 3 L11: 0.0259 L22: 0.7382 REMARK 3 L33: 0.1148 L12: 0.1803 REMARK 3 L13: 0.0927 L23: -0.0603 REMARK 3 S TENSOR REMARK 3 S11: 0.6097 S12: 0.8347 S13: -1.0085 REMARK 3 S21: 0.8085 S22: -0.8119 S23: 0.8692 REMARK 3 S31: -1.3800 S32: -0.1569 S33: 0.0596 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN D AND RESID 21:26) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1794 18.8849 -54.1929 REMARK 3 T TENSOR REMARK 3 T11: 1.0630 T22: 1.6089 REMARK 3 T33: 2.1498 T12: 0.3089 REMARK 3 T13: -0.8607 T23: 0.3936 REMARK 3 L TENSOR REMARK 3 L11: 0.0346 L22: 0.0636 REMARK 3 L33: 0.0701 L12: 0.0277 REMARK 3 L13: -0.0506 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.3251 S12: 0.4517 S13: -0.2612 REMARK 3 S21: 0.6812 S22: 0.2012 S23: 0.2176 REMARK 3 S31: -1.1601 S32: -0.3610 S33: 0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN D AND RESID 27:34) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8704 19.7837 -41.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.9064 REMARK 3 T33: 0.5268 T12: -0.0418 REMARK 3 T13: -0.4173 T23: 0.2445 REMARK 3 L TENSOR REMARK 3 L11: -0.0097 L22: 0.0591 REMARK 3 L33: 0.1462 L12: -0.0089 REMARK 3 L13: -0.0236 L23: 0.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.9927 S13: -0.5697 REMARK 3 S21: 0.3155 S22: -0.0686 S23: -0.2484 REMARK 3 S31: -0.1889 S32: 0.9804 S33: 0.1834 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN D AND RESID 35:40) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5831 18.6253 -31.4488 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 1.9889 REMARK 3 T33: 0.9683 T12: -0.1834 REMARK 3 T13: 0.0225 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: -0.0224 L22: 0.0195 REMARK 3 L33: 0.0015 L12: 0.0237 REMARK 3 L13: -0.0163 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.4314 S12: 0.5722 S13: -0.5841 REMARK 3 S21: -0.3840 S22: -0.2465 S23: -0.5117 REMARK 3 S31: -0.3436 S32: 0.1312 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3POV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SILICON [111] REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 63.087 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PROTEIN CO-ORDINATES FROM ENTRY 3FHD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 180MM AMMONIUM FORMATE, 19% PEG 3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.28000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.28000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 156 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 LYS A 159 REMARK 465 TRP A 165 REMARK 465 PRO A 166 REMARK 465 ILE A 167 REMARK 465 THR A 168 REMARK 465 ASN A 169 REMARK 465 ASN A 170 REMARK 465 HIS A 171 REMARK 465 PHE A 172 REMARK 465 VAL A 173 REMARK 465 ALA A 174 REMARK 465 GLY A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 ASP A 229 REMARK 465 THR A 230 REMARK 465 GLU A 231 REMARK 465 GLY A 232 REMARK 465 ARG A 233 REMARK 465 LEU A 234 REMARK 465 GLN A 235 REMARK 465 LEU A 390 REMARK 465 ASP A 391 REMARK 465 SER A 392 REMARK 465 GLY A 393 REMARK 465 ILE A 394 REMARK 465 PRO A 395 REMARK 465 ARG A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 465 VAL A 482 REMARK 465 PRO A 483 REMARK 465 HIS A 484 REMARK 465 SER A 485 REMARK 465 PRO A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 THR A 6 OG1 CG2 REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LEU A 324 CG CD1 CD2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 451 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 ASP A 466 CG OD1 OD2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 TYR A 477 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 481 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DC C 12 P REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 30 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 66.56 -113.71 REMARK 500 LEU A 23 154.81 -47.77 REMARK 500 VAL A 25 1.81 -68.88 REMARK 500 SER A 127 1.71 -67.47 REMARK 500 GLN A 129 -125.76 60.00 REMARK 500 GLN A 154 6.48 58.38 REMARK 500 ILE A 161 -43.80 -157.08 REMARK 500 ASN A 225 63.35 60.98 REMARK 500 ALA A 313 -71.96 -109.71 REMARK 500 SER A 336 34.35 -147.95 REMARK 500 THR A 337 -55.67 -131.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 487 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 221 OD2 REMARK 620 2 GLU A 244 OE2 66.7 REMARK 620 3 ILE A 245 O 85.0 103.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 489 DBREF 3POV A 1 486 UNP P88925 P88925_HHV8 1 486 DBREF 3POV C 2 20 PDB 3POV 3POV 2 20 DBREF 3POV D 21 39 PDB 3POV 3POV 21 39 SEQADV 3POV GLY A -1 UNP P88925 EXPRESSION TAG SEQADV 3POV ALA A 0 UNP P88925 EXPRESSION TAG SEQRES 1 A 488 GLY ALA MET GLU ALA THR PRO THR PRO ALA ASP LEU PHE SEQRES 2 A 488 SER GLU ASP TYR LEU VAL ASP THR LEU ASP GLY LEU THR SEQRES 3 A 488 VAL ASP ASP GLN GLN ALA VAL LEU ALA SER LEU SER PHE SEQRES 4 A 488 SER LYS PHE LEU LYS HIS ALA LYS VAL ARG ASP TRP CYS SEQRES 5 A 488 ALA GLN ALA LYS ILE GLN PRO SER MET PRO ALA LEU ARG SEQRES 6 A 488 MET ALA TYR ASN TYR PHE LEU PHE SER LYS VAL GLY GLU SEQRES 7 A 488 PHE ILE GLY SER GLU ASP VAL CYS ASN PHE PHE VAL ASP SEQRES 8 A 488 ARG VAL PHE GLY GLY VAL ARG LEU LEU ASP VAL ALA SER SEQRES 9 A 488 VAL TYR ALA ALA CYS SER GLN MET ASN ALA HIS GLN ARG SEQRES 10 A 488 HIS HIS ILE CYS CYS LEU VAL GLU ARG ALA THR SER SER SEQRES 11 A 488 GLN SER LEU ASN PRO VAL TRP ASP ALA LEU ARG ASP GLY SEQRES 12 A 488 ILE ILE SER SER SER LYS PHE HIS TRP ALA VAL LYS GLN SEQRES 13 A 488 GLN ASN THR SER LYS LYS ILE PHE SER PRO TRP PRO ILE SEQRES 14 A 488 THR ASN ASN HIS PHE VAL ALA GLY PRO LEU ALA PHE GLY SEQRES 15 A 488 LEU ARG CYS GLU GLU VAL VAL LYS THR LEU LEU ALA THR SEQRES 16 A 488 LEU LEU HIS PRO ASP GLU THR ASN CYS LEU ASP TYR GLY SEQRES 17 A 488 PHE MET GLN SER PRO GLN ASN GLY ILE PHE GLY VAL SER SEQRES 18 A 488 LEU ASP PHE ALA ALA ASN VAL LYS THR ASP THR GLU GLY SEQRES 19 A 488 ARG LEU GLN PHE ASP PRO ASN CYS LYS VAL TYR GLU ILE SEQRES 20 A 488 LYS CYS ARG PHE LYS TYR THR PHE ALA LYS MET GLU CYS SEQRES 21 A 488 ASP PRO ILE TYR ALA ALA TYR GLN ARG LEU TYR GLU ALA SEQRES 22 A 488 PRO GLY LYS LEU ALA LEU LYS ASP PHE PHE TYR SER ILE SEQRES 23 A 488 SER LYS PRO ALA VAL GLU TYR VAL GLY LEU GLY LYS LEU SEQRES 24 A 488 PRO SER GLU SER ASP TYR LEU VAL ALA TYR ASP GLN GLU SEQRES 25 A 488 TRP GLU ALA CYS PRO ARG LYS LYS ARG LYS LEU THR PRO SEQRES 26 A 488 LEU HIS ASN LEU ILE ARG GLU CYS ILE LEU HIS ASN SER SEQRES 27 A 488 THR THR GLU SER ASP VAL TYR VAL LEU THR ASP PRO GLN SEQRES 28 A 488 ASP THR ARG GLY GLN ILE SER ILE LYS ALA ARG PHE LYS SEQRES 29 A 488 ALA ASN LEU PHE VAL ASN VAL ARG HIS SER TYR PHE TYR SEQRES 30 A 488 GLN VAL LEU LEU GLN SER SER ILE VAL GLU GLU TYR ILE SEQRES 31 A 488 GLY LEU ASP SER GLY ILE PRO ARG LEU GLY SER PRO LYS SEQRES 32 A 488 TYR TYR ILE ALA THR GLY PHE PHE ARG LYS ARG GLY TYR SEQRES 33 A 488 GLN ASP PRO VAL ASN CYS THR ILE GLY GLY ASP ALA LEU SEQRES 34 A 488 ASP PRO HIS VAL GLU ILE PRO THR LEU LEU ILE VAL THR SEQRES 35 A 488 PRO VAL TYR PHE PRO ARG GLY ALA LYS HIS ARG LEU LEU SEQRES 36 A 488 HIS GLN ALA ALA ASN PHE TRP SER ARG SER ALA LYS ASP SEQRES 37 A 488 THR PHE PRO TYR ILE LYS TRP ASP PHE SER TYR LEU SER SEQRES 38 A 488 ALA ASN VAL PRO HIS SER PRO SEQRES 1 C 19 DG DG DG DA DT DC DC DT DC DC DC DA DG SEQRES 2 C 19 DT DC DG DA DC DC SEQRES 1 D 19 DG DG DT DC DG DA DC DT DA DG DG DA DG SEQRES 2 D 19 DG DA DT DC DC DC HET MG A 487 1 HET MG A 488 1 HET FMT A 489 3 HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID FORMUL 4 MG 2(MG 2+) FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *125(H2 O) HELIX 1 1 TYR A 15 LEU A 20 1 6 HELIX 2 2 ASP A 26 ALA A 33 1 8 HELIX 3 3 SER A 36 LYS A 42 1 7 HELIX 4 4 HIS A 43 GLN A 52 1 10 HELIX 5 5 PRO A 60 GLY A 79 1 20 HELIX 6 6 GLU A 81 VAL A 91 1 11 HELIX 7 7 ASP A 99 SER A 108 1 10 HELIX 8 8 ASN A 111 ALA A 125 1 15 HELIX 9 9 THR A 126 SER A 127 5 2 HELIX 10 10 SER A 128 PRO A 133 5 6 HELIX 11 11 VAL A 134 ARG A 139 1 6 HELIX 12 12 SER A 145 LYS A 153 1 9 HELIX 13 13 ALA A 178 LEU A 194 1 17 HELIX 14 14 ASP A 259 ALA A 271 1 13 HELIX 15 15 GLY A 273 TYR A 282 1 10 HELIX 16 16 ASP A 308 GLU A 312 5 5 HELIX 17 17 THR A 322 LEU A 324 5 3 HELIX 18 18 HIS A 325 HIS A 334 1 10 HELIX 19 19 HIS A 371 TYR A 387 1 17 HELIX 20 20 PRO A 445 PHE A 468 1 24 HELIX 21 21 TYR A 477 ASN A 481 5 5 SHEET 1 A 3 ILE A 143 SER A 144 0 SHEET 2 A 3 PHE A 216 VAL A 218 1 O GLY A 217 N ILE A 143 SHEET 3 A 3 MET A 208 GLN A 209 -1 N MET A 208 O VAL A 218 SHEET 1 B 7 ASN A 201 CYS A 202 0 SHEET 2 B 7 PHE A 222 ALA A 224 -1 O ALA A 223 N CYS A 202 SHEET 3 B 7 LYS A 241 ARG A 248 -1 O LYS A 241 N ALA A 224 SHEET 4 B 7 LYS A 401 ARG A 410 1 O LYS A 401 N VAL A 242 SHEET 5 B 7 ILE A 433 PRO A 441 -1 O THR A 435 N PHE A 408 SHEET 6 B 7 SER A 340 LEU A 345 -1 N ASP A 341 O VAL A 439 SHEET 7 B 7 ILE A 357 ALA A 363 -1 O PHE A 361 N VAL A 342 SHEET 1 C 3 VAL A 289 TYR A 291 0 SHEET 2 C 3 LEU A 304 ALA A 306 1 O ALA A 306 N GLU A 290 SHEET 3 C 3 PHE A 366 VAL A 367 -1 O PHE A 366 N VAL A 305 SHEET 1 D 2 THR A 421 ILE A 422 0 SHEET 2 D 2 ASP A 425 ALA A 426 -1 O ASP A 425 N ILE A 422 LINK OD2 ASP A 221 MG MG A 487 1555 1555 2.82 LINK OE2 GLU A 244 MG MG A 487 1555 1555 2.86 LINK O ILE A 245 MG MG A 487 1555 1555 2.91 CISPEP 1 MET A 59 PRO A 60 0 7.20 SITE 1 AC1 5 GLU A 184 ASP A 221 GLU A 244 ILE A 245 SITE 2 AC1 5 LYS A 246 SITE 1 AC2 5 GLU A 184 LYS A 246 CYS A 247 HOH A 523 SITE 2 AC2 5 DG C 3 SITE 1 AC3 3 SER A 145 VAL A 218 SER A 219 CRYST1 54.520 67.660 174.560 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005729 0.00000