HEADER VIRAL PROTEIN 26-NOV-10 3PQH TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF THE BACTERIOPHAGE TITLE 2 PHI92 MEMBRANE-PIERCING PROTEIN GP138 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE PRODUCT 138; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE PHI92; SOURCE 3 ORGANISM_TAXID: 38018; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: 834 (DE3) KEYWDS BETA-HELIX, OB-FOLD, PHAGE BASEPLATE, IRON-BINDING, CELL MEMBRANE KEYWDS 2 PIERCING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BROWNING,M.SHNEIDER,P.G.LEIMAN REVDAT 4 21-FEB-24 3PQH 1 REMARK LINK REVDAT 3 08-NOV-17 3PQH 1 REMARK REVDAT 2 29-FEB-12 3PQH 1 JRNL REVDAT 1 22-FEB-12 3PQH 0 JRNL AUTH C.BROWNING,M.M.SHNEIDER,V.D.BOWMAN,D.SCHWARZER,P.G.LEIMAN JRNL TITL PHAGE PIERCES THE HOST CELL MEMBRANE WITH THE IRON-LOADED JRNL TITL 2 SPIKE. JRNL REF STRUCTURE V. 20 326 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22325780 JRNL DOI 10.1016/J.STR.2011.12.009 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 61037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5424 - 2.7897 0.99 6286 334 0.1437 0.1649 REMARK 3 2 2.7897 - 2.2143 1.00 6076 313 0.1181 0.1612 REMARK 3 3 2.2143 - 1.9344 0.99 5912 344 0.1025 0.1290 REMARK 3 4 1.9344 - 1.7575 0.99 5895 323 0.0947 0.1447 REMARK 3 5 1.7575 - 1.6316 0.98 5787 324 0.0899 0.1404 REMARK 3 6 1.6316 - 1.5354 0.98 5779 313 0.0921 0.1499 REMARK 3 7 1.5354 - 1.4585 0.97 5708 269 0.1039 0.1478 REMARK 3 8 1.4585 - 1.3950 0.96 5667 314 0.1312 0.1966 REMARK 3 9 1.3950 - 1.3413 0.94 5502 292 0.1593 0.2263 REMARK 3 10 1.3413 - 1.2950 0.91 5322 277 0.2011 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.49 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 95.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25270 REMARK 3 B22 (A**2) : -0.25270 REMARK 3 B33 (A**2) : 0.50530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1731 REMARK 3 ANGLE : 1.751 2380 REMARK 3 CHIRALITY : 0.141 283 REMARK 3 PLANARITY : 0.010 315 REMARK 3 DIHEDRAL : 12.957 665 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 41.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 16.60 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : 0.75900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C/D/E REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7MG/ML 34% - 38% PEE 100MM - 400MM KCL REMARK 280 100MM MES PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K. 7MG/ML 20% -26% PEG 2000 100MM - 400MM CACL2 100MM TRIS PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 24.04000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 13.87950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 184.40100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 24.04000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 13.87950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 184.40100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 24.04000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 13.87950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 184.40100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 24.04000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 13.87950 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 184.40100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 24.04000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 13.87950 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 184.40100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 24.04000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 13.87950 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 184.40100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 27.75900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 368.80200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 27.75900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 368.80200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 27.75900 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 368.80200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 27.75900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 368.80200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 27.75900 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 368.80200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 27.75900 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 368.80200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -221.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -24.04000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 41.63850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.08000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -24.04000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 41.63850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.08000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -394.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -24.04000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 41.63850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.08000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 FE FE A 2 LIES ON A SPECIAL POSITION. REMARK 375 FE FE B 1 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 298 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 275 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 632 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 PHE A 121 REMARK 465 ILE A 122 REMARK 465 PRO A 123 REMARK 465 LYS A 124 REMARK 465 ILE A 125 REMARK 465 ALA A 126 REMARK 465 THR A 127 REMARK 465 ALA A 128 REMARK 465 THR A 129 REMARK 465 ASP A 130 REMARK 465 SER A 131 REMARK 465 SER A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 VAL A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 GLY A 245 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 PHE B 121 REMARK 465 ILE B 122 REMARK 465 PRO B 123 REMARK 465 LYS B 124 REMARK 465 ILE B 125 REMARK 465 ALA B 126 REMARK 465 THR B 127 REMARK 465 ALA B 128 REMARK 465 THR B 129 REMARK 465 ASP B 130 REMARK 465 SER B 131 REMARK 465 SER B 132 REMARK 465 GLU B 133 REMARK 465 GLU B 134 REMARK 465 VAL B 135 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 465 GLY B 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 244 O HOH A 647 1.98 REMARK 500 NE2 GLN B 147 O HOH B 644 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 228 O HOH A 641 12455 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 2 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 225 NE2 91.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 4 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 205 OG1 REMARK 620 2 HOH A 265 O 101.9 REMARK 620 3 HOH A 279 O 111.6 113.4 REMARK 620 4 HOH A 282 O 86.7 106.8 130.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 5 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 222 OG1 REMARK 620 2 HOH A 294 O 141.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 11 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 216 O REMARK 620 2 HOH A 294 O 134.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 223 NE2 REMARK 620 2 HIS B 225 NE2 91.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PQI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACTERIOPHAGE GP138 MEMBRANE-PIERCING PROTEIN DBREF 3PQH A 119 245 PDB 3PQH 3PQH 119 245 DBREF 3PQH B 119 245 PDB 3PQH 3PQH 119 245 SEQRES 1 A 127 GLY SER PHE ILE PRO LYS ILE ALA THR ALA THR ASP SER SEQRES 2 A 127 SER GLU GLU VAL ASP SER GLU LYS VAL ILE ILE SER ASN SEQRES 3 A 127 ASN LYS GLN THR TYR ALA SER PHE ASP PRO ASN GLY ASN SEQRES 4 A 127 ILE SER VAL TYR ASN THR GLN GLY MET LYS ILE ASP MET SEQRES 5 A 127 THR PRO ASN SER ILE VAL LEU THR ASP ALA GLY GLY GLY SEQRES 6 A 127 LYS LEU THR LEU GLN GLY GLY THR MET THR TYR LYS GLY SEQRES 7 A 127 GLY THR VAL ASN LEU ASN GLY LEU THR ILE THR PRO ASP SEQRES 8 A 127 GLY ARG MET THR ASP SER GLY GLY ILE GLY LEU HIS THR SEQRES 9 A 127 HIS THR HIS PRO VAL ARG GLY VAL GLU THR GLY GLY SER SEQRES 10 A 127 THR VAL THR SER ASP LYS PRO ASN GLY GLY SEQRES 1 B 127 GLY SER PHE ILE PRO LYS ILE ALA THR ALA THR ASP SER SEQRES 2 B 127 SER GLU GLU VAL ASP SER GLU LYS VAL ILE ILE SER ASN SEQRES 3 B 127 ASN LYS GLN THR TYR ALA SER PHE ASP PRO ASN GLY ASN SEQRES 4 B 127 ILE SER VAL TYR ASN THR GLN GLY MET LYS ILE ASP MET SEQRES 5 B 127 THR PRO ASN SER ILE VAL LEU THR ASP ALA GLY GLY GLY SEQRES 6 B 127 LYS LEU THR LEU GLN GLY GLY THR MET THR TYR LYS GLY SEQRES 7 B 127 GLY THR VAL ASN LEU ASN GLY LEU THR ILE THR PRO ASP SEQRES 8 B 127 GLY ARG MET THR ASP SER GLY GLY ILE GLY LEU HIS THR SEQRES 9 B 127 HIS THR HIS PRO VAL ARG GLY VAL GLU THR GLY GLY SER SEQRES 10 B 127 THR VAL THR SER ASP LYS PRO ASN GLY GLY HET FE A 2 1 HET NA A 3 1 HET NA A 4 1 HET NA A 5 1 HET NA A 6 1 HET NA A 11 1 HET FE B 1 1 HET NA B 2 1 HET NA B 10 1 HETNAM FE FE (III) ION HETNAM NA SODIUM ION FORMUL 3 FE 2(FE 3+) FORMUL 4 NA 7(NA 1+) FORMUL 12 HOH *419(H2 O) SHEET 1 A14 THR A 191 LYS A 195 0 SHEET 2 A14 GLY A 183 GLN A 188 -1 N THR A 186 O THR A 193 SHEET 3 A14 SER A 174 ASP A 179 -1 N ASP A 179 O GLY A 183 SHEET 4 A14 LYS A 167 THR A 171 -1 N LYS A 167 O THR A 178 SHEET 5 A14 ILE A 158 ASN A 162 -1 N ILE A 158 O MET A 170 SHEET 6 A14 THR A 148 PHE A 152 -1 N SER A 151 O SER A 159 SHEET 7 A14 VAL A 140 ASN A 144 -1 N ILE A 142 O ALA A 150 SHEET 8 A14 VAL B 140 ASN B 144 -1 O SER B 143 N ILE A 141 SHEET 9 A14 THR B 148 PHE B 152 -1 O ALA B 150 N ILE B 142 SHEET 10 A14 ILE B 158 ASN B 162 -1 O SER B 159 N SER B 151 SHEET 11 A14 LYS B 167 THR B 171 -1 O MET B 170 N ILE B 158 SHEET 12 A14 SER B 174 ASP B 179 -1 O THR B 178 N LYS B 167 SHEET 13 A14 GLY B 183 GLN B 188 -1 O GLY B 183 N ASP B 179 SHEET 14 A14 THR B 191 LYS B 195 -1 O THR B 193 N THR B 186 SHEET 1 B 3 VAL A 199 LEU A 201 0 SHEET 2 B 3 LEU A 204 ILE A 206 -1 O LEU A 204 N LEU A 201 SHEET 3 B 3 MET A 212 THR A 213 -1 O THR A 213 N THR A 205 SHEET 1 C 3 VAL B 199 LEU B 201 0 SHEET 2 C 3 LEU B 204 ILE B 206 -1 O LEU B 204 N LEU B 201 SHEET 3 C 3 MET B 212 THR B 213 -1 O THR B 213 N THR B 205 LINK FE FE A 2 NE2 HIS A 223 1555 1555 2.22 LINK FE FE A 2 NE2 HIS A 225 1555 1555 2.22 LINK NA NA A 3 O HOH A 267 1555 1555 3.06 LINK NA NA A 4 OG1ATHR A 205 1555 1555 2.72 LINK NA NA A 4 O HOH A 265 1555 1555 2.91 LINK NA NA A 4 O HOH A 279 1555 1555 2.82 LINK NA NA A 4 O HOH A 282 1555 1555 2.89 LINK NA NA A 5 OG1 THR A 222 1555 1555 3.11 LINK NA NA A 5 O HOH A 294 1555 1555 3.07 LINK NA NA A 11 O GLY A 216 1555 1555 2.89 LINK NA NA A 11 O HOH A 294 1555 1555 2.67 LINK FE FE B 1 NE2 HIS B 223 1555 1555 2.20 LINK FE FE B 1 NE2 HIS B 225 1555 1555 2.22 SITE 1 AC1 2 HIS B 223 HIS B 225 SITE 1 AC2 2 HIS A 223 HIS A 225 SITE 1 AC3 5 ARG B 211 MET B 212 ASP B 214 LEU B 220 SITE 2 AC3 5 HIS B 221 SITE 1 AC4 4 ASP A 209 ARG A 211 LYS A 241 HOH A 267 SITE 1 AC5 4 THR A 205 HOH A 265 HOH A 279 HOH A 282 SITE 1 AC6 5 GLY A 217 GLY A 219 THR A 222 HIS A 223 SITE 2 AC6 5 HOH A 294 SITE 1 AC7 4 THR A 207 ASP A 209 ARG A 211 LYS A 241 SITE 1 AC8 4 GLY B 217 GLY B 219 THR B 222 HIS B 223 SITE 1 AC9 5 GLY A 216 GLY A 217 GLY A 244 HOH A 294 SITE 2 AC9 5 HOH A 647 CRYST1 48.080 48.080 553.203 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020799 0.012008 0.000000 0.00000 SCALE2 0.000000 0.024016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001808 0.00000