data_3PQI # _entry.id 3PQI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PQI RCSB RCSB062696 WWPDB D_1000062696 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3PQH _pdbx_database_related.details 'Crystal Structure of the C terminal fragment of Bacteriophage gp138 membrane-piercing protein' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PQI _pdbx_database_status.recvd_initial_deposition_date 2010-11-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Browning, C.' 1 'Shneider, M.' 2 'Leiman, P.G.' 3 # _citation.id primary _citation.title 'Phage pierces the host cell membrane with the iron-loaded spike.' _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 326 _citation.page_last 339 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22325780 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.12.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Browning, C.' 1 primary 'Shneider, M.M.' 2 primary 'Bowman, V.D.' 3 primary 'Schwarzer, D.' 4 primary 'Leiman, P.G.' 5 # _cell.entry_id 3PQI _cell.length_a 65.144 _cell.length_b 65.144 _cell.length_c 329.375 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PQI _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'gene product 138' 25884.715 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMDALNFVTAIRGLINEQVAEVHTSLPVRVIGVDYGSKTVTLESIVKNTRSTEDEIDYPTFHDVPFMVNGGGTGRISFP IKAGDIGVVVFSERDPSNAFQTDGDTASSGTLIQPCGLYPACFIPKIATATDSSEEVDSEKVIISNNKQTYASFDPNGNI SVYNTQGMKIDMTPNSIVLTDAGGGKLTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGGIGLHTHTHPVRGVETGGSTVT SDKPNGG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMDALNFVTAIRGLINEQVAEVHTSLPVRVIGVDYGSKTVTLESIVKNTRSTEDEIDYPTFHDVPFMVNGGGTGRISFP IKAGDIGVVVFSERDPSNAFQTDGDTASSGTLIQPCGLYPACFIPKIATATDSSEEVDSEKVIISNNKQTYASFDPNGNI SVYNTQGMKIDMTPNSIVLTDAGGGKLTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGGIGLHTHTHPVRGVETGGSTVT SDKPNGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ASP n 1 5 ALA n 1 6 LEU n 1 7 ASN n 1 8 PHE n 1 9 VAL n 1 10 THR n 1 11 ALA n 1 12 ILE n 1 13 ARG n 1 14 GLY n 1 15 LEU n 1 16 ILE n 1 17 ASN n 1 18 GLU n 1 19 GLN n 1 20 VAL n 1 21 ALA n 1 22 GLU n 1 23 VAL n 1 24 HIS n 1 25 THR n 1 26 SER n 1 27 LEU n 1 28 PRO n 1 29 VAL n 1 30 ARG n 1 31 VAL n 1 32 ILE n 1 33 GLY n 1 34 VAL n 1 35 ASP n 1 36 TYR n 1 37 GLY n 1 38 SER n 1 39 LYS n 1 40 THR n 1 41 VAL n 1 42 THR n 1 43 LEU n 1 44 GLU n 1 45 SER n 1 46 ILE n 1 47 VAL n 1 48 LYS n 1 49 ASN n 1 50 THR n 1 51 ARG n 1 52 SER n 1 53 THR n 1 54 GLU n 1 55 ASP n 1 56 GLU n 1 57 ILE n 1 58 ASP n 1 59 TYR n 1 60 PRO n 1 61 THR n 1 62 PHE n 1 63 HIS n 1 64 ASP n 1 65 VAL n 1 66 PRO n 1 67 PHE n 1 68 MET n 1 69 VAL n 1 70 ASN n 1 71 GLY n 1 72 GLY n 1 73 GLY n 1 74 THR n 1 75 GLY n 1 76 ARG n 1 77 ILE n 1 78 SER n 1 79 PHE n 1 80 PRO n 1 81 ILE n 1 82 LYS n 1 83 ALA n 1 84 GLY n 1 85 ASP n 1 86 ILE n 1 87 GLY n 1 88 VAL n 1 89 VAL n 1 90 VAL n 1 91 PHE n 1 92 SER n 1 93 GLU n 1 94 ARG n 1 95 ASP n 1 96 PRO n 1 97 SER n 1 98 ASN n 1 99 ALA n 1 100 PHE n 1 101 GLN n 1 102 THR n 1 103 ASP n 1 104 GLY n 1 105 ASP n 1 106 THR n 1 107 ALA n 1 108 SER n 1 109 SER n 1 110 GLY n 1 111 THR n 1 112 LEU n 1 113 ILE n 1 114 GLN n 1 115 PRO n 1 116 CYS n 1 117 GLY n 1 118 LEU n 1 119 TYR n 1 120 PRO n 1 121 ALA n 1 122 CYS n 1 123 PHE n 1 124 ILE n 1 125 PRO n 1 126 LYS n 1 127 ILE n 1 128 ALA n 1 129 THR n 1 130 ALA n 1 131 THR n 1 132 ASP n 1 133 SER n 1 134 SER n 1 135 GLU n 1 136 GLU n 1 137 VAL n 1 138 ASP n 1 139 SER n 1 140 GLU n 1 141 LYS n 1 142 VAL n 1 143 ILE n 1 144 ILE n 1 145 SER n 1 146 ASN n 1 147 ASN n 1 148 LYS n 1 149 GLN n 1 150 THR n 1 151 TYR n 1 152 ALA n 1 153 SER n 1 154 PHE n 1 155 ASP n 1 156 PRO n 1 157 ASN n 1 158 GLY n 1 159 ASN n 1 160 ILE n 1 161 SER n 1 162 VAL n 1 163 TYR n 1 164 ASN n 1 165 THR n 1 166 GLN n 1 167 GLY n 1 168 MET n 1 169 LYS n 1 170 ILE n 1 171 ASP n 1 172 MET n 1 173 THR n 1 174 PRO n 1 175 ASN n 1 176 SER n 1 177 ILE n 1 178 VAL n 1 179 LEU n 1 180 THR n 1 181 ASP n 1 182 ALA n 1 183 GLY n 1 184 GLY n 1 185 GLY n 1 186 LYS n 1 187 LEU n 1 188 THR n 1 189 LEU n 1 190 GLN n 1 191 GLY n 1 192 GLY n 1 193 THR n 1 194 MET n 1 195 THR n 1 196 TYR n 1 197 LYS n 1 198 GLY n 1 199 GLY n 1 200 THR n 1 201 VAL n 1 202 ASN n 1 203 LEU n 1 204 ASN n 1 205 GLY n 1 206 LEU n 1 207 THR n 1 208 ILE n 1 209 THR n 1 210 PRO n 1 211 ASP n 1 212 GLY n 1 213 ARG n 1 214 MET n 1 215 THR n 1 216 ASP n 1 217 SER n 1 218 GLY n 1 219 GLY n 1 220 ILE n 1 221 GLY n 1 222 LEU n 1 223 HIS n 1 224 THR n 1 225 HIS n 1 226 THR n 1 227 HIS n 1 228 PRO n 1 229 VAL n 1 230 ARG n 1 231 GLY n 1 232 VAL n 1 233 GLU n 1 234 THR n 1 235 GLY n 1 236 GLY n 1 237 SER n 1 238 THR n 1 239 VAL n 1 240 THR n 1 241 SER n 1 242 ASP n 1 243 LYS n 1 244 PRO n 1 245 ASN n 1 246 GLY n 1 247 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteriophage phi92' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 38018 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain '834 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3PQI _struct_ref.pdbx_db_accession 3PQI _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GSMDALNFVTAIRGLINEQVAEVHTSLPVRVIGVDYGSKTVTLESIVKNTRSTEDEIDYPTFHDVPFMVNGGGTGRISFP IKAGDIGVVVFSERDPSNAFQTDGDTASSGTLIQPCGLYPACFIPKIATATDSSEEVDSEKVIISNNKQTYASFDPNGNI SVYNTQGMKIDMTPNSIVLTDAGGGKLTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGGIGLHTHTHPVRGVETGGSTVT SDKPNGG ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PQI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 247 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3PQI _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 245 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PQI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 2.60 52.66 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_pH_range _exptl_crystal_grow.pdbx_details 1 'VAPOR DIFFUSION, HANGING DROP' 291 ? 8.0 ? ;10 mg/ml 10% - 12% PEG 2K 100mM - 200mM MgCl2 100mM Tris pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; 2 'VAPOR DIFFUSION, HANGING DROP' 291 ? 7.5 ? ;10 mg/ml 10% - 12% PEG 2K 250mM KCl 50mM Tris pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3PQI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 55.61 _reflns.d_resolution_high 2.64 _reflns.number_obs 8304 _reflns.number_all 8322 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.093 _reflns.pdbx_netI_over_sigmaI 18.4 _reflns.B_iso_Wilson_estimate 44.90 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.6420 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.517 _reflns_shell.pdbx_Rsym_value 0.469 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 10.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3PQI _refine.ls_number_reflns_obs 8279 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.94 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.607 _refine.ls_d_res_high 2.642 _refine.ls_percent_reflns_obs 99.16 _refine.ls_R_factor_obs 0.2127 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2107 _refine.ls_R_factor_R_free 0.2501 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 415 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 66.22 _refine.aniso_B[1][1] -10.4162 _refine.aniso_B[2][2] -10.4162 _refine.aniso_B[3][3] 20.8324 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.304 _refine.solvent_model_param_bsol 44.104 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.06 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 26.22 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1481 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 2.642 _refine_hist.d_res_low 55.607 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1508 'X-RAY DIFFRACTION' ? f_angle_d 0.794 ? ? 2048 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.711 ? ? 540 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 244 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 265 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6420 3.0243 2549 0.2377 99.00 0.2801 . . 134 . . . . 'X-RAY DIFFRACTION' . 3.0243 3.8102 2591 0.2025 99.00 0.2965 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.8102 55.6189 2724 0.2070 99.00 0.2203 . . 144 . . . . # _struct.entry_id 3PQI _struct.title 'Crystal structure of the bacteriophage phi92 membrane-piercing protein gp138' _struct.pdbx_descriptor 'gene product 138' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PQI _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Beta-Helix, OB-Fold, Phage Baseplate, Iron-Binding, Cell membrane piercing, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 114 A CYS 120 1_555 ? ? ? ? ? ? ? 2.045 ? metalc1 metalc ? ? A HIS 225 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 223 A FE 246 1_555 ? ? ? ? ? ? ? 2.363 ? metalc2 metalc ? ? A HIS 227 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 225 A FE 246 1_555 ? ? ? ? ? ? ? 2.425 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 110 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 108 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 THR _struct_mon_prot_cis.pdbx_label_seq_id_2 111 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 THR _struct_mon_prot_cis.pdbx_auth_seq_id_2 109 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.80 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 7 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 61 ? PRO A 66 ? THR A 59 PRO A 64 A 2 THR A 40 ? SER A 45 ? THR A 38 SER A 43 A 3 THR A 25 ? ASP A 35 ? THR A 23 ASP A 33 A 4 ILE A 86 ? PHE A 91 ? ILE A 84 PHE A 89 A 5 CYS A 122 ? PRO A 125 ? CYS A 120 PRO A 123 B 1 ASN A 70 ? GLY A 72 ? ASN A 68 GLY A 70 B 2 GLY A 75 ? ILE A 77 ? GLY A 73 ILE A 75 C 1 VAL A 142 ? ASN A 146 ? VAL A 140 ASN A 144 C 2 THR A 150 ? PHE A 154 ? THR A 148 PHE A 152 C 3 ILE A 160 ? ASN A 164 ? ILE A 158 ASN A 162 C 4 LYS A 169 ? THR A 173 ? LYS A 167 THR A 171 C 5 SER A 176 ? ASP A 181 ? SER A 174 ASP A 179 C 6 GLY A 185 ? GLN A 190 ? GLY A 183 GLN A 188 C 7 THR A 193 ? LYS A 197 ? THR A 191 LYS A 195 D 1 VAL A 201 ? LEU A 203 ? VAL A 199 LEU A 201 D 2 LEU A 206 ? ILE A 208 ? LEU A 204 ILE A 206 D 3 MET A 214 ? THR A 215 ? MET A 212 THR A 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 65 ? O VAL A 63 N VAL A 41 ? N VAL A 39 A 2 3 O THR A 40 ? O THR A 38 N ASP A 35 ? N ASP A 33 A 3 4 N THR A 25 ? N THR A 23 O PHE A 91 ? O PHE A 89 A 4 5 N VAL A 88 ? N VAL A 86 O ILE A 124 ? O ILE A 122 B 1 2 N ASN A 70 ? N ASN A 68 O ILE A 77 ? O ILE A 75 C 1 2 N ILE A 144 ? N ILE A 142 O ALA A 152 ? O ALA A 150 C 2 3 N SER A 153 ? N SER A 151 O SER A 161 ? O SER A 159 C 3 4 N ILE A 160 ? N ILE A 158 O MET A 172 ? O MET A 170 C 4 5 N LYS A 169 ? N LYS A 167 O THR A 180 ? O THR A 178 C 5 6 N LEU A 179 ? N LEU A 177 O LEU A 187 ? O LEU A 185 C 6 7 N THR A 188 ? N THR A 186 O THR A 195 ? O THR A 193 D 1 2 N LEU A 203 ? N LEU A 201 O LEU A 206 ? O LEU A 204 D 2 3 N THR A 207 ? N THR A 205 O THR A 215 ? O THR A 213 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE FE A 246' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 225 ? HIS A 223 . ? 1_555 ? 2 AC1 6 HIS A 225 ? HIS A 223 . ? 2_555 ? 3 AC1 6 HIS A 225 ? HIS A 223 . ? 3_555 ? 4 AC1 6 HIS A 227 ? HIS A 225 . ? 3_555 ? 5 AC1 6 HIS A 227 ? HIS A 225 . ? 2_555 ? 6 AC1 6 HIS A 227 ? HIS A 225 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PQI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PQI _atom_sites.fract_transf_matrix[1][1] 0.015351 _atom_sites.fract_transf_matrix[1][2] 0.008863 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017725 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003036 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE K N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 ASP 4 2 ? ? ? A . n A 1 5 ALA 5 3 ? ? ? A . n A 1 6 LEU 6 4 ? ? ? A . n A 1 7 ASN 7 5 ? ? ? A . n A 1 8 PHE 8 6 ? ? ? A . n A 1 9 VAL 9 7 ? ? ? A . n A 1 10 THR 10 8 ? ? ? A . n A 1 11 ALA 11 9 ? ? ? A . n A 1 12 ILE 12 10 ? ? ? A . n A 1 13 ARG 13 11 ? ? ? A . n A 1 14 GLY 14 12 ? ? ? A . n A 1 15 LEU 15 13 ? ? ? A . n A 1 16 ILE 16 14 ? ? ? A . n A 1 17 ASN 17 15 ? ? ? A . n A 1 18 GLU 18 16 ? ? ? A . n A 1 19 GLN 19 17 ? ? ? A . n A 1 20 VAL 20 18 ? ? ? A . n A 1 21 ALA 21 19 ? ? ? A . n A 1 22 GLU 22 20 ? ? ? A . n A 1 23 VAL 23 21 ? ? ? A . n A 1 24 HIS 24 22 22 HIS HIS A . n A 1 25 THR 25 23 23 THR THR A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 LEU 27 25 25 LEU LEU A . n A 1 28 PRO 28 26 26 PRO PRO A . n A 1 29 VAL 29 27 27 VAL VAL A . n A 1 30 ARG 30 28 28 ARG ARG A . n A 1 31 VAL 31 29 29 VAL VAL A . n A 1 32 ILE 32 30 30 ILE ILE A . n A 1 33 GLY 33 31 31 GLY GLY A . n A 1 34 VAL 34 32 32 VAL VAL A . n A 1 35 ASP 35 33 33 ASP ASP A . n A 1 36 TYR 36 34 34 TYR TYR A . n A 1 37 GLY 37 35 35 GLY GLY A . n A 1 38 SER 38 36 36 SER SER A . n A 1 39 LYS 39 37 37 LYS LYS A . n A 1 40 THR 40 38 38 THR THR A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 THR 42 40 40 THR THR A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 SER 45 43 43 SER SER A . n A 1 46 ILE 46 44 44 ILE ILE A . n A 1 47 VAL 47 45 45 VAL VAL A . n A 1 48 LYS 48 46 46 LYS LYS A . n A 1 49 ASN 49 47 47 ASN ASN A . n A 1 50 THR 50 48 48 THR THR A . n A 1 51 ARG 51 49 ? ? ? A . n A 1 52 SER 52 50 ? ? ? A . n A 1 53 THR 53 51 ? ? ? A . n A 1 54 GLU 54 52 ? ? ? A . n A 1 55 ASP 55 53 ? ? ? A . n A 1 56 GLU 56 54 54 GLU GLU A . n A 1 57 ILE 57 55 55 ILE ILE A . n A 1 58 ASP 58 56 56 ASP ASP A . n A 1 59 TYR 59 57 57 TYR TYR A . n A 1 60 PRO 60 58 58 PRO PRO A . n A 1 61 THR 61 59 59 THR THR A . n A 1 62 PHE 62 60 60 PHE PHE A . n A 1 63 HIS 63 61 61 HIS HIS A . n A 1 64 ASP 64 62 62 ASP ASP A . n A 1 65 VAL 65 63 63 VAL VAL A . n A 1 66 PRO 66 64 64 PRO PRO A . n A 1 67 PHE 67 65 65 PHE PHE A . n A 1 68 MET 68 66 66 MET MET A . n A 1 69 VAL 69 67 67 VAL VAL A . n A 1 70 ASN 70 68 68 ASN ASN A . n A 1 71 GLY 71 69 69 GLY GLY A . n A 1 72 GLY 72 70 70 GLY GLY A . n A 1 73 GLY 73 71 71 GLY GLY A . n A 1 74 THR 74 72 72 THR THR A . n A 1 75 GLY 75 73 73 GLY GLY A . n A 1 76 ARG 76 74 74 ARG ARG A . n A 1 77 ILE 77 75 75 ILE ILE A . n A 1 78 SER 78 76 76 SER SER A . n A 1 79 PHE 79 77 77 PHE PHE A . n A 1 80 PRO 80 78 78 PRO PRO A . n A 1 81 ILE 81 79 79 ILE ILE A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 ALA 83 81 81 ALA ALA A . n A 1 84 GLY 84 82 82 GLY GLY A . n A 1 85 ASP 85 83 83 ASP ASP A . n A 1 86 ILE 86 84 84 ILE ILE A . n A 1 87 GLY 87 85 85 GLY GLY A . n A 1 88 VAL 88 86 86 VAL VAL A . n A 1 89 VAL 89 87 87 VAL VAL A . n A 1 90 VAL 90 88 88 VAL VAL A . n A 1 91 PHE 91 89 89 PHE PHE A . n A 1 92 SER 92 90 90 SER SER A . n A 1 93 GLU 93 91 ? ? ? A . n A 1 94 ARG 94 92 ? ? ? A . n A 1 95 ASP 95 93 ? ? ? A . n A 1 96 PRO 96 94 ? ? ? A . n A 1 97 SER 97 95 ? ? ? A . n A 1 98 ASN 98 96 ? ? ? A . n A 1 99 ALA 99 97 ? ? ? A . n A 1 100 PHE 100 98 ? ? ? A . n A 1 101 GLN 101 99 ? ? ? A . n A 1 102 THR 102 100 ? ? ? A . n A 1 103 ASP 103 101 ? ? ? A . n A 1 104 GLY 104 102 ? ? ? A . n A 1 105 ASP 105 103 ? ? ? A . n A 1 106 THR 106 104 ? ? ? A . n A 1 107 ALA 107 105 ? ? ? A . n A 1 108 SER 108 106 106 SER SER A . n A 1 109 SER 109 107 107 SER SER A . n A 1 110 GLY 110 108 108 GLY GLY A . n A 1 111 THR 111 109 109 THR THR A . n A 1 112 LEU 112 110 110 LEU LEU A . n A 1 113 ILE 113 111 111 ILE ILE A . n A 1 114 GLN 114 112 112 GLN GLN A . n A 1 115 PRO 115 113 113 PRO PRO A . n A 1 116 CYS 116 114 114 CYS CYS A . n A 1 117 GLY 117 115 115 GLY GLY A . n A 1 118 LEU 118 116 116 LEU LEU A . n A 1 119 TYR 119 117 117 TYR TYR A . n A 1 120 PRO 120 118 118 PRO PRO A . n A 1 121 ALA 121 119 119 ALA ALA A . n A 1 122 CYS 122 120 120 CYS CYS A . n A 1 123 PHE 123 121 121 PHE PHE A . n A 1 124 ILE 124 122 122 ILE ILE A . n A 1 125 PRO 125 123 123 PRO PRO A . n A 1 126 LYS 126 124 124 LYS LYS A . n A 1 127 ILE 127 125 125 ILE ILE A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 THR 129 127 127 THR THR A . n A 1 130 ALA 130 128 128 ALA ALA A . n A 1 131 THR 131 129 129 THR THR A . n A 1 132 ASP 132 130 130 ASP ASP A . n A 1 133 SER 133 131 131 SER SER A . n A 1 134 SER 134 132 132 SER SER A . n A 1 135 GLU 135 133 133 GLU GLU A . n A 1 136 GLU 136 134 134 GLU GLU A . n A 1 137 VAL 137 135 135 VAL VAL A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 SER 139 137 137 SER SER A . n A 1 140 GLU 140 138 138 GLU GLU A . n A 1 141 LYS 141 139 139 LYS LYS A . n A 1 142 VAL 142 140 140 VAL VAL A . n A 1 143 ILE 143 141 141 ILE ILE A . n A 1 144 ILE 144 142 142 ILE ILE A . n A 1 145 SER 145 143 143 SER SER A . n A 1 146 ASN 146 144 144 ASN ASN A . n A 1 147 ASN 147 145 145 ASN ASN A . n A 1 148 LYS 148 146 146 LYS LYS A . n A 1 149 GLN 149 147 147 GLN GLN A . n A 1 150 THR 150 148 148 THR THR A . n A 1 151 TYR 151 149 149 TYR TYR A . n A 1 152 ALA 152 150 150 ALA ALA A . n A 1 153 SER 153 151 151 SER SER A . n A 1 154 PHE 154 152 152 PHE PHE A . n A 1 155 ASP 155 153 153 ASP ASP A . n A 1 156 PRO 156 154 154 PRO PRO A . n A 1 157 ASN 157 155 155 ASN ASN A . n A 1 158 GLY 158 156 156 GLY GLY A . n A 1 159 ASN 159 157 157 ASN ASN A . n A 1 160 ILE 160 158 158 ILE ILE A . n A 1 161 SER 161 159 159 SER SER A . n A 1 162 VAL 162 160 160 VAL VAL A . n A 1 163 TYR 163 161 161 TYR TYR A . n A 1 164 ASN 164 162 162 ASN ASN A . n A 1 165 THR 165 163 163 THR THR A . n A 1 166 GLN 166 164 164 GLN GLN A . n A 1 167 GLY 167 165 165 GLY GLY A . n A 1 168 MET 168 166 166 MET MET A . n A 1 169 LYS 169 167 167 LYS LYS A . n A 1 170 ILE 170 168 168 ILE ILE A . n A 1 171 ASP 171 169 169 ASP ASP A . n A 1 172 MET 172 170 170 MET MET A . n A 1 173 THR 173 171 171 THR THR A . n A 1 174 PRO 174 172 172 PRO PRO A . n A 1 175 ASN 175 173 173 ASN ASN A . n A 1 176 SER 176 174 174 SER SER A . n A 1 177 ILE 177 175 175 ILE ILE A . n A 1 178 VAL 178 176 176 VAL VAL A . n A 1 179 LEU 179 177 177 LEU LEU A . n A 1 180 THR 180 178 178 THR THR A . n A 1 181 ASP 181 179 179 ASP ASP A . n A 1 182 ALA 182 180 180 ALA ALA A . n A 1 183 GLY 183 181 181 GLY GLY A . n A 1 184 GLY 184 182 182 GLY GLY A . n A 1 185 GLY 185 183 183 GLY GLY A . n A 1 186 LYS 186 184 184 LYS LYS A . n A 1 187 LEU 187 185 185 LEU LEU A . n A 1 188 THR 188 186 186 THR THR A . n A 1 189 LEU 189 187 187 LEU LEU A . n A 1 190 GLN 190 188 188 GLN GLN A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 GLY 192 190 190 GLY GLY A . n A 1 193 THR 193 191 191 THR THR A . n A 1 194 MET 194 192 192 MET MET A . n A 1 195 THR 195 193 193 THR THR A . n A 1 196 TYR 196 194 194 TYR TYR A . n A 1 197 LYS 197 195 195 LYS LYS A . n A 1 198 GLY 198 196 196 GLY GLY A . n A 1 199 GLY 199 197 197 GLY GLY A . n A 1 200 THR 200 198 198 THR THR A . n A 1 201 VAL 201 199 199 VAL VAL A . n A 1 202 ASN 202 200 200 ASN ASN A . n A 1 203 LEU 203 201 201 LEU LEU A . n A 1 204 ASN 204 202 202 ASN ASN A . n A 1 205 GLY 205 203 203 GLY GLY A . n A 1 206 LEU 206 204 204 LEU LEU A . n A 1 207 THR 207 205 205 THR THR A . n A 1 208 ILE 208 206 206 ILE ILE A . n A 1 209 THR 209 207 207 THR THR A . n A 1 210 PRO 210 208 208 PRO PRO A . n A 1 211 ASP 211 209 209 ASP ASP A . n A 1 212 GLY 212 210 210 GLY GLY A . n A 1 213 ARG 213 211 211 ARG ARG A . n A 1 214 MET 214 212 212 MET MET A . n A 1 215 THR 215 213 213 THR THR A . n A 1 216 ASP 216 214 214 ASP ASP A . n A 1 217 SER 217 215 215 SER SER A . n A 1 218 GLY 218 216 216 GLY GLY A . n A 1 219 GLY 219 217 217 GLY GLY A . n A 1 220 ILE 220 218 218 ILE ILE A . n A 1 221 GLY 221 219 219 GLY GLY A . n A 1 222 LEU 222 220 220 LEU LEU A . n A 1 223 HIS 223 221 221 HIS HIS A . n A 1 224 THR 224 222 222 THR THR A . n A 1 225 HIS 225 223 223 HIS HIS A . n A 1 226 THR 226 224 224 THR THR A . n A 1 227 HIS 227 225 225 HIS HIS A . n A 1 228 PRO 228 226 226 PRO PRO A . n A 1 229 VAL 229 227 227 VAL VAL A . n A 1 230 ARG 230 228 228 ARG ARG A . n A 1 231 GLY 231 229 229 GLY GLY A . n A 1 232 VAL 232 230 230 VAL VAL A . n A 1 233 GLU 233 231 231 GLU GLU A . n A 1 234 THR 234 232 232 THR THR A . n A 1 235 GLY 235 233 233 GLY GLY A . n A 1 236 GLY 236 234 234 GLY GLY A . n A 1 237 SER 237 235 235 SER SER A . n A 1 238 THR 238 236 236 THR THR A . n A 1 239 VAL 239 237 237 VAL VAL A . n A 1 240 THR 240 238 238 THR THR A . n A 1 241 SER 241 239 239 SER SER A . n A 1 242 ASP 242 240 240 ASP ASP A . n A 1 243 LYS 243 241 241 LYS LYS A . n A 1 244 PRO 244 242 242 PRO PRO A . n A 1 245 ASN 245 243 243 ASN ASN A . n A 1 246 GLY 246 244 ? ? ? A . n A 1 247 GLY 247 245 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 246 246 FE FE A . C 3 K 1 248 248 K K A . D 4 HOH 1 247 1 HOH HOH A . D 4 HOH 2 249 2 HOH HOH A . D 4 HOH 3 250 3 HOH HOH A . D 4 HOH 4 251 4 HOH HOH A . D 4 HOH 5 252 5 HOH HOH A . D 4 HOH 6 253 6 HOH HOH A . D 4 HOH 7 254 7 HOH HOH A . D 4 HOH 8 255 8 HOH HOH A . D 4 HOH 9 256 9 HOH HOH A . D 4 HOH 10 257 10 HOH HOH A . D 4 HOH 11 258 11 HOH HOH A . D 4 HOH 12 259 12 HOH HOH A . D 4 HOH 13 260 13 HOH HOH A . D 4 HOH 14 261 14 HOH HOH A . D 4 HOH 15 262 15 HOH HOH A . D 4 HOH 16 263 16 HOH HOH A . D 4 HOH 17 264 17 HOH HOH A . D 4 HOH 18 265 18 HOH HOH A . D 4 HOH 19 266 19 HOH HOH A . D 4 HOH 20 267 20 HOH HOH A . D 4 HOH 21 268 21 HOH HOH A . D 4 HOH 22 269 22 HOH HOH A . D 4 HOH 23 270 23 HOH HOH A . D 4 HOH 24 271 24 HOH HOH A . D 4 HOH 25 272 25 HOH HOH A . D 4 HOH 26 273 26 HOH HOH A . D 4 HOH 27 274 27 HOH HOH A . D 4 HOH 28 275 28 HOH HOH A . D 4 HOH 29 276 29 HOH HOH A . D 4 HOH 30 277 30 HOH HOH A . D 4 HOH 31 278 31 HOH HOH A . D 4 HOH 32 279 32 HOH HOH A . D 4 HOH 33 280 33 HOH HOH A . D 4 HOH 34 281 34 HOH HOH A . D 4 HOH 35 282 35 HOH HOH A . D 4 HOH 36 283 36 HOH HOH A . D 4 HOH 37 284 37 HOH HOH A . D 4 HOH 38 285 38 HOH HOH A . D 4 HOH 39 286 39 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 22010 ? 1 MORE -182 ? 1 'SSA (A^2)' 24240 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A FE 246 ? B FE . 2 1 A HOH 272 ? D HOH . 3 1 A HOH 280 ? D HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 225 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 223 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id FE _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id FE _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id FE _pdbx_struct_conn_angle.ptnr2_auth_seq_id 246 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 227 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 225 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 92.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-22 2 'Structure model' 1 1 2012-02-29 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -20.0523 2.2521 134.8102 0.6584 0.5830 0.7345 -0.0487 0.1481 -0.0165 0.1967 0.3762 0.3554 0.0205 0.0759 0.3871 -0.0013 -0.5406 0.2650 0.2055 0.3866 0.2148 -0.4045 -0.1445 0.0007 'X-RAY DIFFRACTION' 2 ? refined -11.1583 6.9667 130.1767 0.5775 0.3571 0.8705 -0.0355 0.1542 -0.1421 1.1496 0.0988 0.2486 -0.0578 0.4254 -0.1361 0.1514 0.3484 0.1473 -0.1262 -0.4021 0.4743 -0.0401 -0.0499 -0.0749 'X-RAY DIFFRACTION' 3 ? refined -7.3390 -1.1173 124.5565 0.4020 0.4063 0.6382 -0.0573 0.0639 -0.0146 0.7560 0.4443 0.6583 0.0511 -0.0989 -0.5512 0.0605 -0.1639 0.1584 0.4788 -0.1807 0.0243 0.0911 -0.0231 -0.0001 'X-RAY DIFFRACTION' 4 ? refined -2.2206 -4.9859 81.9601 0.2729 0.2747 0.2337 -0.0282 -0.0826 -0.0145 0.6985 0.6705 0.5903 -0.2114 -0.3278 -0.0642 0.0616 0.1775 -0.1403 -0.1575 0.0225 0.0907 0.1705 -0.2222 -0.0010 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 22:58) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 59:70) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 71:144) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 145:243) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal RemDAq 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 55 ? ? 112.60 -55.83 2 1 ASP A 56 ? ? 84.93 -66.21 3 1 PHE A 89 ? ? -167.04 -148.67 4 1 LYS A 124 ? ? -110.57 77.99 5 1 LYS A 146 ? ? 44.62 29.44 6 1 ALA A 180 ? ? -51.36 -8.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A ASP 2 ? A ASP 4 5 1 Y 1 A ALA 3 ? A ALA 5 6 1 Y 1 A LEU 4 ? A LEU 6 7 1 Y 1 A ASN 5 ? A ASN 7 8 1 Y 1 A PHE 6 ? A PHE 8 9 1 Y 1 A VAL 7 ? A VAL 9 10 1 Y 1 A THR 8 ? A THR 10 11 1 Y 1 A ALA 9 ? A ALA 11 12 1 Y 1 A ILE 10 ? A ILE 12 13 1 Y 1 A ARG 11 ? A ARG 13 14 1 Y 1 A GLY 12 ? A GLY 14 15 1 Y 1 A LEU 13 ? A LEU 15 16 1 Y 1 A ILE 14 ? A ILE 16 17 1 Y 1 A ASN 15 ? A ASN 17 18 1 Y 1 A GLU 16 ? A GLU 18 19 1 Y 1 A GLN 17 ? A GLN 19 20 1 Y 1 A VAL 18 ? A VAL 20 21 1 Y 1 A ALA 19 ? A ALA 21 22 1 Y 1 A GLU 20 ? A GLU 22 23 1 Y 1 A VAL 21 ? A VAL 23 24 1 Y 1 A ARG 49 ? A ARG 51 25 1 Y 1 A SER 50 ? A SER 52 26 1 Y 1 A THR 51 ? A THR 53 27 1 Y 1 A GLU 52 ? A GLU 54 28 1 Y 1 A ASP 53 ? A ASP 55 29 1 Y 1 A GLU 91 ? A GLU 93 30 1 Y 1 A ARG 92 ? A ARG 94 31 1 Y 1 A ASP 93 ? A ASP 95 32 1 Y 1 A PRO 94 ? A PRO 96 33 1 Y 1 A SER 95 ? A SER 97 34 1 Y 1 A ASN 96 ? A ASN 98 35 1 Y 1 A ALA 97 ? A ALA 99 36 1 Y 1 A PHE 98 ? A PHE 100 37 1 Y 1 A GLN 99 ? A GLN 101 38 1 Y 1 A THR 100 ? A THR 102 39 1 Y 1 A ASP 101 ? A ASP 103 40 1 Y 1 A GLY 102 ? A GLY 104 41 1 Y 1 A ASP 103 ? A ASP 105 42 1 Y 1 A THR 104 ? A THR 106 43 1 Y 1 A ALA 105 ? A ALA 107 44 1 Y 1 A GLY 244 ? A GLY 246 45 1 Y 1 A GLY 245 ? A GLY 247 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'POTASSIUM ION' K 4 water HOH #