HEADER LIGASE 02-DEC-10 3PTF TITLE X-RAY STRUCTURE OF THE NON-COVALENT COMPLEX BETWEEN UBCH5A AND TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: E2; COMPND 5 SYNONYM: STIMULATOR OF FE TRANSPORT, SFT, UBC4/5 HOMOLOG, UBCH5, COMPND 6 UBIQUITIN CARRIER PROTEIN D1, UBIQUITIN-CONJUGATING ENZYME E2(17)KB COMPND 7 1, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 1, UBIQUITIN-PROTEIN LIGASE COMPND 8 D1; COMPND 9 EC: 6.3.2.19; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: POLYUBIQUITIN-B; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: UBIQUITIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFT, UBC5A, UBCH5, UBCH5A, UBE2D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBIQUITIN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS PROTEIN-PROTEIN COMPLEX, E2, UBIQUITIN, UBIQUITIN CONJUGATING ENZYME, KEYWDS 2 ALPHA/BETA, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR I.BOSANAC,S.G.HYMOWITZ REVDAT 2 06-SEP-23 3PTF 1 SEQADV REVDAT 1 11-MAY-11 3PTF 0 JRNL AUTH I.BOSANAC,L.PHU,B.PAN,I.ZILBERLEYB,B.MAURER,V.M.DIXIT, JRNL AUTH 2 S.G.HYMOWITZ,D.S.KIRKPATRICK JRNL TITL MODULATION OF K11-LINKAGE FORMATION BY VARIABLE LOOP JRNL TITL 2 RESIDUES WITHIN UBCH5A. JRNL REF J.MOL.BIOL. V. 408 420 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21396940 JRNL DOI 10.1016/J.JMB.2011.03.011 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.5100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3698 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2549 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5023 ; 1.095 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6270 ; 0.808 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;33.352 ;24.753 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;15.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 560 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4022 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2276 ; 2.619 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 886 ; 0.505 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3717 ; 4.661 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 3.513 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1305 ; 5.951 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 61 1 REMARK 3 1 B 4 B 61 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 778 ; 0.02 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 778 ; 0.45 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 1 C 73 4 REMARK 3 1 D 1 D 73 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 990 ; 0.25 ; 0.50 REMARK 3 MEDIUM THERMAL 2 C (A**2): 990 ; 0.49 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2863 19.0461 33.6864 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.0899 REMARK 3 T33: 0.0848 T12: -0.0039 REMARK 3 T13: 0.0144 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.5165 L22: 1.4066 REMARK 3 L33: 3.2141 L12: 0.0598 REMARK 3 L13: 0.6924 L23: 1.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.0290 S13: -0.0219 REMARK 3 S21: 0.0688 S22: -0.0369 S23: -0.0557 REMARK 3 S31: 0.2012 S32: -0.0078 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0049 50.2918 10.5067 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1149 REMARK 3 T33: 0.0781 T12: 0.0155 REMARK 3 T13: 0.0260 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.0249 L22: 3.1262 REMARK 3 L33: 1.6981 L12: 0.1941 REMARK 3 L13: -0.0838 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.2224 S12: -0.0511 S13: -0.0381 REMARK 3 S21: -0.1340 S22: 0.2316 S23: -0.0582 REMARK 3 S31: -0.0331 S32: 0.1883 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 73 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6131 42.4372 33.0572 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0461 REMARK 3 T33: 0.1027 T12: -0.0127 REMARK 3 T13: 0.0233 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.9410 L22: 3.5983 REMARK 3 L33: 4.8786 L12: 0.0594 REMARK 3 L13: 0.8408 L23: 0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: 0.0728 S13: -0.0202 REMARK 3 S21: 0.0780 S22: -0.0698 S23: 0.0397 REMARK 3 S31: -0.0654 S32: -0.0299 S33: -0.0112 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 73 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3371 61.8829 -10.3491 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.0710 REMARK 3 T33: 0.0705 T12: -0.0322 REMARK 3 T13: 0.0359 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.3677 L22: 5.2689 REMARK 3 L33: 4.9335 L12: -0.9046 REMARK 3 L13: -0.0959 L23: -0.9290 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: 0.1105 S13: 0.1599 REMARK 3 S21: -0.0783 S22: -0.1136 S23: -0.1075 REMARK 3 S31: -0.1206 S32: -0.1498 S33: 0.0230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45800 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ, 1X23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF THE COMPLEX WERE GROWN BY REMARK 280 HANGING-DROP VAPOR DIFFUSION AT 19 C BY COMBINING 1.5 UL OF REMARK 280 PROTEIN SOLUTION (20 MM MES PH 6.0, 150 MM NACL AND 0.5 MM TCEP) REMARK 280 AT 20 MG/ML WITH 1.5 UL OF RESERVOIR SOLUTION (0.1 M TRIS PH 8.5 REMARK 280 AND 24% PEG 10,000), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.73100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.90300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.90300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.73100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -5 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 ARG C 74 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 ARG D 74 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -4 -66.64 -20.35 REMARK 500 ILE A 88 -7.44 -59.14 REMARK 500 ARG A 90 -106.08 -134.95 REMARK 500 ASP A 130 79.07 -160.06 REMARK 500 ARG B 90 -111.59 -138.01 REMARK 500 ALA C 46 54.95 28.43 REMARK 500 LYS C 63 125.30 -38.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 3PTF A 1 147 UNP P51668 UB2D1_HUMAN 1 147 DBREF 3PTF B 1 147 UNP P51668 UB2D1_HUMAN 1 147 DBREF 3PTF C 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 3PTF D 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 3PTF GLY A -5 UNP P51668 EXPRESSION TAG SEQADV 3PTF SER A -4 UNP P51668 EXPRESSION TAG SEQADV 3PTF HIS A -3 UNP P51668 EXPRESSION TAG SEQADV 3PTF MET A -2 UNP P51668 EXPRESSION TAG SEQADV 3PTF LEU A -1 UNP P51668 EXPRESSION TAG SEQADV 3PTF GLU A 0 UNP P51668 EXPRESSION TAG SEQADV 3PTF GLY B -5 UNP P51668 EXPRESSION TAG SEQADV 3PTF SER B -4 UNP P51668 EXPRESSION TAG SEQADV 3PTF HIS B -3 UNP P51668 EXPRESSION TAG SEQADV 3PTF MET B -2 UNP P51668 EXPRESSION TAG SEQADV 3PTF LEU B -1 UNP P51668 EXPRESSION TAG SEQADV 3PTF GLU B 0 UNP P51668 EXPRESSION TAG SEQADV 3PTF GLY C -2 UNP P0CG47 EXPRESSION TAG SEQADV 3PTF SER C -1 UNP P0CG47 EXPRESSION TAG SEQADV 3PTF HIS C 0 UNP P0CG47 EXPRESSION TAG SEQADV 3PTF GLY D -2 UNP P0CG47 EXPRESSION TAG SEQADV 3PTF SER D -1 UNP P0CG47 EXPRESSION TAG SEQADV 3PTF HIS D 0 UNP P0CG47 EXPRESSION TAG SEQRES 1 A 153 GLY SER HIS MET LEU GLU MET ALA LEU LYS ARG ILE GLN SEQRES 2 A 153 LYS GLU LEU SER ASP LEU GLN ARG ASP PRO PRO ALA HIS SEQRES 3 A 153 CYS SER ALA GLY PRO VAL GLY ASP ASP LEU PHE HIS TRP SEQRES 4 A 153 GLN ALA THR ILE MET GLY PRO PRO ASP SER ALA TYR GLN SEQRES 5 A 153 GLY GLY VAL PHE PHE LEU THR VAL HIS PHE PRO THR ASP SEQRES 6 A 153 TYR PRO PHE LYS PRO PRO LYS ILE ALA PHE THR THR LYS SEQRES 7 A 153 ILE TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE CYS SEQRES 8 A 153 LEU ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR SEQRES 9 A 153 VAL SER LYS VAL LEU LEU SER ILE CYS SER LEU LEU CYS SEQRES 10 A 153 ASP PRO ASN PRO ASP ASP PRO LEU VAL PRO ASP ILE ALA SEQRES 11 A 153 GLN ILE TYR LYS SER ASP LYS GLU LYS TYR ASN ARG HIS SEQRES 12 A 153 ALA ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 B 153 GLY SER HIS MET LEU GLU MET ALA LEU LYS ARG ILE GLN SEQRES 2 B 153 LYS GLU LEU SER ASP LEU GLN ARG ASP PRO PRO ALA HIS SEQRES 3 B 153 CYS SER ALA GLY PRO VAL GLY ASP ASP LEU PHE HIS TRP SEQRES 4 B 153 GLN ALA THR ILE MET GLY PRO PRO ASP SER ALA TYR GLN SEQRES 5 B 153 GLY GLY VAL PHE PHE LEU THR VAL HIS PHE PRO THR ASP SEQRES 6 B 153 TYR PRO PHE LYS PRO PRO LYS ILE ALA PHE THR THR LYS SEQRES 7 B 153 ILE TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE CYS SEQRES 8 B 153 LEU ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR SEQRES 9 B 153 VAL SER LYS VAL LEU LEU SER ILE CYS SER LEU LEU CYS SEQRES 10 B 153 ASP PRO ASN PRO ASP ASP PRO LEU VAL PRO ASP ILE ALA SEQRES 11 B 153 GLN ILE TYR LYS SER ASP LYS GLU LYS TYR ASN ARG HIS SEQRES 12 B 153 ALA ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 C 79 GLY SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 2 C 79 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 3 C 79 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 4 C 79 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 5 C 79 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 6 C 79 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 7 C 79 GLY SEQRES 1 D 79 GLY SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 2 D 79 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 3 D 79 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 4 D 79 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 5 D 79 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 6 D 79 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 7 D 79 GLY FORMUL 5 HOH *40(H2 O) HELIX 1 1 GLY A -5 ASP A 16 1 22 HELIX 2 2 LEU A 86 ARG A 90 5 5 HELIX 3 3 THR A 98 ASP A 112 1 15 HELIX 4 4 VAL A 120 ASP A 130 1 11 HELIX 5 5 ASP A 130 ALA A 146 1 17 HELIX 6 6 SER B -4 ASP B 16 1 21 HELIX 7 7 LEU B 86 ARG B 90 5 5 HELIX 8 8 THR B 98 ASP B 112 1 15 HELIX 9 9 VAL B 120 ASP B 130 1 11 HELIX 10 10 ASP B 130 ALA B 146 1 17 HELIX 11 11 THR C 22 GLY C 35 1 14 HELIX 12 12 PRO C 37 ASP C 39 5 3 HELIX 13 13 LEU C 56 ASN C 60 5 5 HELIX 14 14 THR D 22 GLY D 35 1 14 HELIX 15 15 PRO D 37 ASP D 39 5 3 SHEET 1 A 4 CYS A 21 PRO A 25 0 SHEET 2 A 4 HIS A 32 MET A 38 -1 O THR A 36 N SER A 22 SHEET 3 A 4 VAL A 49 HIS A 55 -1 O PHE A 50 N ILE A 37 SHEET 4 A 4 LYS A 66 PHE A 69 -1 O LYS A 66 N HIS A 55 SHEET 1 B 4 CYS B 21 PRO B 25 0 SHEET 2 B 4 HIS B 32 MET B 38 -1 O THR B 36 N SER B 22 SHEET 3 B 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 B 4 LYS B 66 PHE B 69 -1 O ALA B 68 N THR B 53 SHEET 1 C 5 THR C 12 GLU C 16 0 SHEET 2 C 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 C 5 THR C 66 LEU C 71 1 O LEU C 67 N LYS C 6 SHEET 4 C 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 C 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 D 5 THR D 12 VAL D 17 0 SHEET 2 D 5 MET D 1 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 D 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 D 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 D 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 CISPEP 1 TYR A 60 PRO A 61 0 10.01 CISPEP 2 TYR B 60 PRO B 61 0 8.97 CRYST1 27.462 102.903 159.806 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006258 0.00000