HEADER TRANSFERASE 03-DEC-10 3PTY TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL EXTRACELLULAR DOMAIN OF TITLE 2 MYCOBACTERIUM TUBERCULOSIS EMBC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOSYLTRANSFERASE C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 719-1094); COMPND 5 SYNONYM: ARABINOSYLTRANSFERASE EMBC; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: EMBC, MT3900, MTCY13D12.27, RV3793; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS BETA-SANDWICH, CARBOHYDRATE BINDING, CARBOHYDRATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.ALDERWICK,G.S.BESRA,K.FUTTERER REVDAT 3 29-JUL-20 3PTY 1 REMARK SEQADV LINK SITE REVDAT 2 23-MAR-11 3PTY 1 JRNL REVDAT 1 15-DEC-10 3PTY 0 JRNL AUTH L.J.ALDERWICK,G.S.LLOYD,H.GHADBANE,J.W.MAY,A.BHATT, JRNL AUTH 2 L.EGGELING,K.FUTTERER,G.S.BESRA JRNL TITL THE C-TERMINAL DOMAIN OF THE ARABINOSYLTRANSFERASE JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS EMBC IS A LECTIN-LIKE JRNL TITL 3 CARBOHYDRATE BINDING MODULE. JRNL REF PLOS PATHOG. V. 7 01299 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21383969 JRNL DOI 10.1371/JOURNAL.PPAT.1001299 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2921 - 6.2086 1.00 2750 126 0.1937 0.1951 REMARK 3 2 6.2086 - 4.9302 1.00 2719 171 0.1759 0.1801 REMARK 3 3 4.9302 - 4.3076 1.00 2711 151 0.1460 0.1629 REMARK 3 4 4.3076 - 3.9140 1.00 2707 144 0.1641 0.1697 REMARK 3 5 3.9140 - 3.6337 1.00 2751 160 0.1782 0.1745 REMARK 3 6 3.6337 - 3.4195 1.00 2715 138 0.1876 0.2430 REMARK 3 7 3.4195 - 3.2483 1.00 2728 150 0.1914 0.2099 REMARK 3 8 3.2483 - 3.1070 1.00 2752 133 0.1943 0.2317 REMARK 3 9 3.1070 - 2.9874 1.00 2696 163 0.2036 0.2302 REMARK 3 10 2.9874 - 2.8843 1.00 2725 148 0.2008 0.2226 REMARK 3 11 2.8843 - 2.7941 1.00 2731 149 0.1809 0.2058 REMARK 3 12 2.7941 - 2.7143 1.00 2755 132 0.1816 0.2040 REMARK 3 13 2.7143 - 2.6428 1.00 2734 126 0.1845 0.2297 REMARK 3 14 2.6428 - 2.5784 1.00 2704 152 0.1812 0.1940 REMARK 3 15 2.5784 - 2.5198 1.00 2702 168 0.1943 0.2290 REMARK 3 16 2.5198 - 2.4661 1.00 2760 169 0.1984 0.2220 REMARK 3 17 2.4661 - 2.4168 1.00 2703 134 0.1883 0.2105 REMARK 3 18 2.4168 - 2.3712 1.00 2725 157 0.1769 0.1556 REMARK 3 19 2.3712 - 2.3289 1.00 2745 111 0.1714 0.1933 REMARK 3 20 2.3289 - 2.2894 1.00 2748 136 0.1737 0.1736 REMARK 3 21 2.2894 - 2.2525 1.00 2742 146 0.1762 0.2008 REMARK 3 22 2.2525 - 2.2178 1.00 2732 115 0.1741 0.2195 REMARK 3 23 2.2178 - 2.1852 1.00 2666 170 0.1745 0.2167 REMARK 3 24 2.1852 - 2.1544 1.00 2737 160 0.1828 0.1870 REMARK 3 25 2.1544 - 2.1253 1.00 2744 149 0.1875 0.2295 REMARK 3 26 2.1253 - 2.0977 1.00 2708 161 0.1971 0.2368 REMARK 3 27 2.0977 - 2.0715 1.00 2761 104 0.2075 0.2451 REMARK 3 28 2.0715 - 2.0465 1.00 2697 149 0.2116 0.2501 REMARK 3 29 2.0465 - 2.0227 1.00 2746 142 0.2163 0.2784 REMARK 3 30 2.0227 - 2.0000 1.00 2721 134 0.2266 0.2681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 51.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07580 REMARK 3 B22 (A**2) : -1.07580 REMARK 3 B33 (A**2) : 2.15170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2199 REMARK 3 ANGLE : 1.052 3013 REMARK 3 CHIRALITY : 0.074 341 REMARK 3 PLANARITY : 0.005 395 REMARK 3 DIHEDRAL : 17.683 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 80.7989 5.1276 20.1224 REMARK 3 T TENSOR REMARK 3 T11: 0.1643 T22: 0.1556 REMARK 3 T33: 0.1717 T12: -0.0117 REMARK 3 T13: 0.0128 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4919 L22: 0.5821 REMARK 3 L33: 0.8765 L12: -0.2945 REMARK 3 L13: -0.6492 L23: 0.3292 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0248 S13: -0.0436 REMARK 3 S21: 0.0213 S22: -0.0174 S23: 0.0812 REMARK 3 S31: 0.0420 S32: 0.0690 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763,0.9797,0.9799 REMARK 200 MONOCHROMATOR : SILICON(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : 0.56400 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.08 M AMMONIUM REMARK 280 PHOSPHATE, PH 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.57667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.36500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.78833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.94167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.57667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.78833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.36500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 113.94167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIZATION MAY NOT OCCUR IN THE CONTEXT OF THE FULL REMARK 300 LENGTH PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 719 REMARK 465 VAL A 720 REMARK 465 VAL A 721 REMARK 465 SER A 722 REMARK 465 LEU A 723 REMARK 465 THR A 724 REMARK 465 GLN A 725 REMARK 465 ALA A 726 REMARK 465 MET A 727 REMARK 465 ILE A 728 REMARK 465 SER A 729 REMARK 465 GLN A 730 REMARK 465 TYR A 731 REMARK 465 PRO A 732 REMARK 465 ALA A 733 REMARK 465 TRP A 734 REMARK 465 THR A 795 REMARK 465 ALA A 796 REMARK 465 ASP A 797 REMARK 465 PRO A 798 REMARK 465 VAL A 799 REMARK 465 MET A 800 REMARK 465 GLU A 801 REMARK 465 ARG A 802 REMARK 465 PRO A 803 REMARK 465 GLY A 804 REMARK 465 ASP A 805 REMARK 465 ARG A 806 REMARK 465 SER A 807 REMARK 465 PHE A 808 REMARK 465 LEU A 809 REMARK 465 ASN A 810 REMARK 465 ASP A 811 REMARK 465 ASP A 812 REMARK 465 GLY A 813 REMARK 465 LEU A 814 REMARK 465 ILE A 815 REMARK 465 THR A 816 REMARK 465 GLY A 817 REMARK 465 SER A 818 REMARK 465 GLU A 819 REMARK 465 PRO A 820 REMARK 465 GLY A 821 REMARK 465 THR A 822 REMARK 465 GLU A 823 REMARK 465 GLY A 824 REMARK 465 PHE A 1016 REMARK 465 GLY A 1017 REMARK 465 ALA A 1018 REMARK 465 GLU A 1019 REMARK 465 ALA A 1020 REMARK 465 ASN A 1021 REMARK 465 SER A 1022 REMARK 465 PRO A 1023 REMARK 465 VAL A 1024 REMARK 465 MET A 1025 REMARK 465 ASP A 1026 REMARK 465 HIS A 1027 REMARK 465 ASN A 1028 REMARK 465 GLY A 1029 REMARK 465 GLY A 1030 REMARK 465 GLY A 1031 REMARK 465 PRO A 1032 REMARK 465 LEU A 1033 REMARK 465 GLY A 1034 REMARK 465 PRO A 1068 REMARK 465 ASP A 1069 REMARK 465 ALA A 1070 REMARK 465 GLN A 1071 REMARK 465 PRO A 1072 REMARK 465 ALA A 1073 REMARK 465 ASP A 1074 REMARK 465 LEU A 1075 REMARK 465 ASN A 1076 REMARK 465 LEU A 1077 REMARK 465 GLY A 1078 REMARK 465 THR A 1079 REMARK 465 VAL A 1080 REMARK 465 THR A 1081 REMARK 465 ARG A 1082 REMARK 465 SER A 1083 REMARK 465 GLY A 1084 REMARK 465 LEU A 1085 REMARK 465 TRP A 1086 REMARK 465 SER A 1087 REMARK 465 PRO A 1088 REMARK 465 ALA A 1089 REMARK 465 PRO A 1090 REMARK 465 LEU A 1091 REMARK 465 ARG A 1092 REMARK 465 ARG A 1093 REMARK 465 GLY A 1094 REMARK 465 ALA A 1095 REMARK 465 PRO A 1096 REMARK 465 PRO A 1097 REMARK 465 PRO A 1098 REMARK 465 PRO A 1099 REMARK 465 PRO A 1100 REMARK 465 LEU A 1101 REMARK 465 GLY A 1102 REMARK 465 ARG A 1103 REMARK 465 ASP A 1104 REMARK 465 PRO A 1105 REMARK 465 ASN A 1106 REMARK 465 SER A 1107 REMARK 465 SER A 1108 REMARK 465 SER A 1109 REMARK 465 VAL A 1110 REMARK 465 ASP A 1111 REMARK 465 LYS A 1112 REMARK 465 LEU A 1113 REMARK 465 ALA A 1114 REMARK 465 ALA A 1115 REMARK 465 ALA A 1116 REMARK 465 LEU A 1117 REMARK 465 GLU A 1118 REMARK 465 HIS A 1119 REMARK 465 HIS A 1120 REMARK 465 HIS A 1121 REMARK 465 HIS A 1122 REMARK 465 HIS A 1123 REMARK 465 HIS A 1124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 738 CD NE CZ NH1 NH2 REMARK 470 ASP A 793 CG OD1 OD2 REMARK 470 ASN A 874 CG OD1 ND2 REMARK 470 GLU A 875 CG CD OE1 OE2 REMARK 470 ARG A 877 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 955 CG CD OE1 NE2 REMARK 470 LYS A1008 NZ REMARK 470 ARG A1015 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1038 CG CD1 CD2 REMARK 470 LEU A1039 CG CD1 CD2 REMARK 470 TYR A1066 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A1067 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 881 48.76 -83.24 REMARK 500 LEU A1038 3.50 137.16 REMARK 500 LEU A1039 69.99 65.79 REMARK 500 ASP A1052 98.71 -160.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1125 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 33 O REMARK 620 2 HOH A 39 O 102.3 REMARK 620 3 HOH A 67 O 91.6 74.8 REMARK 620 4 ASP A 949 OD2 81.8 152.3 77.8 REMARK 620 5 ASP A 949 OD1 79.6 157.8 127.4 49.7 REMARK 620 6 ASP A 951 O 87.9 76.6 150.6 131.0 81.3 REMARK 620 7 HIS A 956 O 168.4 89.0 89.2 87.1 90.7 97.0 REMARK 620 N 1 2 3 4 5 6 DBREF 3PTY A 719 1094 UNP P72059 EMBC_MYCTU 719 1094 SEQADV 3PTY ALA A 1095 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1096 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1097 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1098 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1099 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1100 UNP P72059 EXPRESSION TAG SEQADV 3PTY LEU A 1101 UNP P72059 EXPRESSION TAG SEQADV 3PTY GLY A 1102 UNP P72059 EXPRESSION TAG SEQADV 3PTY ARG A 1103 UNP P72059 EXPRESSION TAG SEQADV 3PTY ASP A 1104 UNP P72059 EXPRESSION TAG SEQADV 3PTY PRO A 1105 UNP P72059 EXPRESSION TAG SEQADV 3PTY ASN A 1106 UNP P72059 EXPRESSION TAG SEQADV 3PTY SER A 1107 UNP P72059 EXPRESSION TAG SEQADV 3PTY SER A 1108 UNP P72059 EXPRESSION TAG SEQADV 3PTY SER A 1109 UNP P72059 EXPRESSION TAG SEQADV 3PTY VAL A 1110 UNP P72059 EXPRESSION TAG SEQADV 3PTY ASP A 1111 UNP P72059 EXPRESSION TAG SEQADV 3PTY LYS A 1112 UNP P72059 EXPRESSION TAG SEQADV 3PTY LEU A 1113 UNP P72059 EXPRESSION TAG SEQADV 3PTY ALA A 1114 UNP P72059 EXPRESSION TAG SEQADV 3PTY ALA A 1115 UNP P72059 EXPRESSION TAG SEQADV 3PTY ALA A 1116 UNP P72059 EXPRESSION TAG SEQADV 3PTY LEU A 1117 UNP P72059 EXPRESSION TAG SEQADV 3PTY GLU A 1118 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1119 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1120 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1121 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1122 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1123 UNP P72059 EXPRESSION TAG SEQADV 3PTY HIS A 1124 UNP P72059 EXPRESSION TAG SEQRES 1 A 406 GLU VAL VAL SER LEU THR GLN ALA MET ILE SER GLN TYR SEQRES 2 A 406 PRO ALA TRP SER VAL GLY ARG SER ASN LEU GLN ALA LEU SEQRES 3 A 406 ALA GLY LYS THR CYS GLY LEU ALA GLU ASP VAL LEU VAL SEQRES 4 A 406 GLU LEU ASP PRO ASN ALA GLY MET LEU ALA PRO VAL THR SEQRES 5 A 406 ALA PRO LEU ALA ASP ALA LEU GLY ALA GLY LEU SER GLU SEQRES 6 A 406 ALA PHE THR PRO ASN GLY ILE PRO ALA ASP VAL THR ALA SEQRES 7 A 406 ASP PRO VAL MET GLU ARG PRO GLY ASP ARG SER PHE LEU SEQRES 8 A 406 ASN ASP ASP GLY LEU ILE THR GLY SER GLU PRO GLY THR SEQRES 9 A 406 GLU GLY GLY THR THR ALA ALA PRO GLY ILE ASN GLY SER SEQRES 10 A 406 ARG ALA ARG LEU PRO TYR ASN LEU ASP PRO ALA ARG THR SEQRES 11 A 406 PRO VAL LEU GLY SER TRP ARG ALA GLY VAL GLN VAL PRO SEQRES 12 A 406 ALA MET LEU ARG SER GLY TRP TYR ARG LEU PRO THR ASN SEQRES 13 A 406 GLU GLN ARG ASP ARG ALA PRO LEU LEU VAL VAL THR ALA SEQRES 14 A 406 ALA GLY ARG PHE ASP SER ARG GLU VAL ARG LEU GLN TRP SEQRES 15 A 406 ALA THR ASP GLU GLN ALA ALA ALA GLY HIS HIS GLY GLY SEQRES 16 A 406 SER MET GLU PHE ALA ASP VAL GLY ALA ALA PRO ALA TRP SEQRES 17 A 406 ARG ASN LEU ARG ALA PRO LEU SER ALA ILE PRO SER THR SEQRES 18 A 406 ALA THR GLN VAL ARG LEU VAL ALA ASP ASP GLN ASP LEU SEQRES 19 A 406 ALA PRO GLN HIS TRP ILE ALA LEU THR PRO PRO ARG ILE SEQRES 20 A 406 PRO ARG VAL ARG THR LEU GLN ASN VAL VAL GLY ALA ALA SEQRES 21 A 406 ASP PRO VAL PHE LEU ASP TRP LEU VAL GLY LEU ALA PHE SEQRES 22 A 406 PRO CYS GLN ARG PRO PHE GLY HIS GLN TYR GLY VAL ASP SEQRES 23 A 406 GLU THR PRO LYS TRP ARG ILE LEU PRO ASP ARG PHE GLY SEQRES 24 A 406 ALA GLU ALA ASN SER PRO VAL MET ASP HIS ASN GLY GLY SEQRES 25 A 406 GLY PRO LEU GLY ILE THR GLU LEU LEU MET ARG ALA THR SEQRES 26 A 406 THR VAL ALA SER TYR LEU LYS ASP ASP TRP PHE ARG ASP SEQRES 27 A 406 TRP GLY ALA LEU GLN ARG LEU THR PRO TYR TYR PRO ASP SEQRES 28 A 406 ALA GLN PRO ALA ASP LEU ASN LEU GLY THR VAL THR ARG SEQRES 29 A 406 SER GLY LEU TRP SER PRO ALA PRO LEU ARG ARG GLY ALA SEQRES 30 A 406 PRO PRO PRO PRO PRO LEU GLY ARG ASP PRO ASN SER SER SEQRES 31 A 406 SER VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS HET AFO A 1 18 HET CA A1125 1 HET PO4 A 2 5 HETNAM AFO OCTYL ALPHA-D-ARABINOFURANOSIDE HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 AFO C13 H26 O5 FORMUL 3 CA CA 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *113(H2 O) HELIX 1 1 SER A 735 LYS A 747 1 13 HELIX 2 2 CYS A 749 GLU A 753 5 5 HELIX 3 3 ASP A 760 MET A 765 5 6 HELIX 4 4 PRO A 772 LEU A 777 1 6 HELIX 5 5 ASP A 844 THR A 848 5 5 HELIX 6 6 ASP A 892 ARG A 894 5 3 HELIX 7 7 THR A 902 ALA A 908 1 7 HELIX 8 8 SER A 934 ILE A 936 5 3 HELIX 9 9 LEU A 971 GLY A 976 1 6 HELIX 10 10 ASP A 984 LEU A 989 1 6 HELIX 11 11 HIS A 999 VAL A 1003 5 5 SHEET 1 A 7 ARG A 969 THR A 970 0 SHEET 2 A 7 VAL A 755 GLU A 758 -1 N VAL A 757 O ARG A 969 SHEET 3 A 7 MET A1040 LEU A1049 -1 O TYR A1048 N LEU A 756 SHEET 4 A 7 ALA A1059 PRO A1065 -1 O THR A1064 N ARG A1041 SHEET 5 A 7 TRP A1009 LEU A1012 -1 N ARG A1010 O GLN A1061 SHEET 6 A 7 PRO A 980 PHE A 982 1 N PHE A 982 O TRP A1009 SHEET 7 A 7 ARG A 995 PRO A 996 1 O ARG A 995 N VAL A 981 SHEET 1 B 4 LEU A 781 GLU A 783 0 SHEET 2 B 4 ALA A 862 ARG A 865 -1 O MET A 863 N GLU A 783 SHEET 3 B 4 GLN A 942 ASP A 949 -1 O ASP A 949 N ALA A 862 SHEET 4 B 4 TYR A 869 ARG A 870 -1 N TYR A 869 O VAL A 943 SHEET 1 C 5 LEU A 781 GLU A 783 0 SHEET 2 C 5 ALA A 862 ARG A 865 -1 O MET A 863 N GLU A 783 SHEET 3 C 5 GLN A 942 ASP A 949 -1 O ASP A 949 N ALA A 862 SHEET 4 C 5 VAL A 896 ALA A 901 -1 N ARG A 897 O VAL A 946 SHEET 5 C 5 GLY A 913 GLU A 916 -1 O MET A 915 N LEU A 898 SHEET 1 D 5 LEU A 851 GLY A 852 0 SHEET 2 D 5 ILE A 958 LEU A 960 -1 O LEU A 960 N LEU A 851 SHEET 3 D 5 LEU A 882 GLY A 889 -1 N ALA A 888 O ALA A 959 SHEET 4 D 5 ARG A 927 PRO A 932 -1 O ALA A 931 N LEU A 883 SHEET 5 D 5 ALA A 918 VAL A 920 -1 N ALA A 918 O ARG A 930 SSBOND 1 CYS A 749 CYS A 993 1555 1555 2.07 LINK O HOH A 33 CA CA A1125 1555 1555 2.50 LINK O HOH A 39 CA CA A1125 1555 1555 2.56 LINK O HOH A 67 CA CA A1125 1555 1555 2.63 LINK OD2 ASP A 949 CA CA A1125 1555 1555 2.61 LINK OD1 ASP A 949 CA CA A1125 1555 1555 2.63 LINK O ASP A 951 CA CA A1125 1555 1555 2.49 LINK O HIS A 956 CA CA A1125 1555 1555 2.40 CISPEP 1 ALA A 923 PRO A 924 0 4.61 CISPEP 2 ILE A 1035 THR A 1036 0 -19.35 CRYST1 129.130 129.130 136.730 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007744 0.004471 0.000000 0.00000 SCALE2 0.000000 0.008942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007314 0.00000