HEADER TRANSFERASE 06-DEC-10 3PVB TITLE CRYSTAL STRUCTURE OF (73-244)RIA:C HOLOENZYME OF CAMP-DEPENDENT TITLE 2 PROTEIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 7-351; COMPND 5 SYNONYM: PKA C-ALPHA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY COMPND 10 SUBUNIT; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 85-244; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 10 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 11 ORGANISM_TAXID: 9913; SOURCE 12 GENE: PRKAR1A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PRSET KEYWDS KINASE, RIA HOLOENZYME, TETRAMERIC PROTEIN KINASE A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BOETTCHER,J.WU,C.KIM,J.YANG,J.BRUYSTENS,N.CHEUNG,J.K.PENNYPACKER, AUTHOR 2 D.A.BLUMENTHAL,A.P.KORNEV,S.S.TAYLOR REVDAT 4 20-NOV-24 3PVB 1 REMARK REVDAT 3 06-SEP-23 3PVB 1 REMARK LINK REVDAT 2 19-JUN-13 3PVB 1 JRNL VERSN REVDAT 1 02-FEB-11 3PVB 0 JRNL AUTH A.J.BOETTCHER,J.WU,C.KIM,J.YANG,J.BRUYSTENS,N.CHEUNG, JRNL AUTH 2 J.K.PENNYPACKER,D.A.BLUMENTHAL,A.P.KORNEV,S.S.TAYLOR JRNL TITL CRYSTAL STRUCTURE OF (73-244)RIA:C HOLOENZYME OF JRNL TITL 2 CAMP-DEPENDENT PROTEIN KINASE JRNL REF STRUCTURE V. 19 265 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21300294 JRNL DOI 10.1016/J.STR.2010.12.005 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 27860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27860 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2QCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RIA(73-244):C COMPLEX WAS REMARK 280 CRYSTALLIZED IN 0.1M MES PH 6.0 AND 12% PEG 20,000 BY USING A REMARK 280 DOUGLAS INSTRUMENTS ORYX8 CRYSTALLOGRAPHY ROBOT AS 1:1 PROTEIN REMARK 280 SOLUTION:CRYSTALLIZING SOLUTION, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.0 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.40200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.70100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.70100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.40200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE MOLECULE PER ASYMMETRICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 SER A 263 OG REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ASN B 86 CG OD1 ND2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 SER B 110 OG REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 MET B 243 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 185 N PHE A 187 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 98 CB - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 ALA A 233 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 PRO B 117 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 ALA B 215 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -5.01 169.82 REMARK 500 LYS A 8 -88.80 -5.30 REMARK 500 PRO A 33 159.17 -44.52 REMARK 500 ASN A 36 83.99 53.13 REMARK 500 ALA A 38 -145.86 -167.71 REMARK 500 PHE A 54 -37.06 -137.76 REMARK 500 LEU A 59 54.56 -116.37 REMARK 500 PHE A 102 56.98 -91.09 REMARK 500 ARG A 165 -18.82 62.24 REMARK 500 ASP A 184 82.89 63.11 REMARK 500 PRO A 202 -60.33 -13.41 REMARK 500 PRO A 207 -60.51 -27.54 REMARK 500 ALA A 233 -55.45 -145.34 REMARK 500 PRO A 243 -70.46 -40.32 REMARK 500 PRO A 258 -158.93 -74.85 REMARK 500 LYS A 279 32.72 -144.13 REMARK 500 ASN A 283 11.15 -144.18 REMARK 500 LEU A 284 -145.75 -80.26 REMARK 500 ALA A 298 -54.40 -6.85 REMARK 500 PHE A 314 89.02 -163.11 REMARK 500 THR A 324 35.22 -76.45 REMARK 500 CYS A 343 114.63 60.33 REMARK 500 THR A 348 -56.58 -27.40 REMARK 500 ASN B 86 62.42 166.73 REMARK 500 PRO B 87 32.52 -147.74 REMARK 500 VAL B 88 93.14 75.65 REMARK 500 PRO B 117 131.85 -8.57 REMARK 500 GLN B 165 150.47 -44.25 REMARK 500 ASP B 170 -58.19 151.81 REMARK 500 TRP B 188 105.62 -43.05 REMARK 500 SER B 197 151.21 178.44 REMARK 500 GLU B 200 21.28 -57.32 REMARK 500 TYR B 205 2.09 -165.85 REMARK 500 ALA B 211 154.00 178.19 REMARK 500 LYS B 216 -65.71 -17.15 REMARK 500 THR B 217 -168.27 -116.16 REMARK 500 LYS B 240 70.14 -112.72 REMARK 500 LYS B 242 121.51 -178.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 ANP A 400 N3B 138.5 REMARK 620 3 ANP A 400 O2A 89.3 73.7 REMARK 620 4 ANP A 400 O2G 122.3 67.2 140.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 52.5 REMARK 620 3 ANP A 400 O1G 125.9 94.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RGS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DELETION MUTANT OF THE TYPE I ALPHA REMARK 900 REGULATORY SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE REMARK 900 RELATED ID: 2QCS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PKA RIA:C HOLOENZYME DBREF 3PVB A 6 350 UNP P05132 KAPCA_MOUSE 7 351 DBREF 3PVB B 84 243 UNP P00514 KAP0_BOVIN 85 244 SEQRES 1 A 345 ALA LYS LYS GLY SEP GLU GLN GLU SER VAL LYS GLU PHE SEQRES 2 A 345 LEU ALA LYS ALA LYS GLU ASP PHE LEU LYS LYS TRP GLU SEQRES 3 A 345 THR PRO SER GLN ASN THR ALA GLN LEU ASP GLN PHE ASP SEQRES 4 A 345 ARG ILE LYS THR LEU GLY THR GLY SER PHE GLY ARG VAL SEQRES 5 A 345 MET LEU VAL LYS HIS LYS GLU SER GLY ASN HIS TYR ALA SEQRES 6 A 345 MET LYS ILE LEU ASP LYS GLN LYS VAL VAL LYS LEU LYS SEQRES 7 A 345 GLN ILE GLU HIS THR LEU ASN GLU LYS ARG ILE LEU GLN SEQRES 8 A 345 ALA VAL ASN PHE PRO PHE LEU VAL LYS LEU GLU PHE SER SEQRES 9 A 345 PHE LYS ASP ASN SER ASN LEU TYR MET VAL MET GLU TYR SEQRES 10 A 345 VAL ALA GLY GLY GLU MET PHE SER HIS LEU ARG ARG ILE SEQRES 11 A 345 GLY ARG PHE SEP GLU PRO HIS ALA ARG PHE TYR ALA ALA SEQRES 12 A 345 GLN ILE VAL LEU THR PHE GLU TYR LEU HIS SER LEU ASP SEQRES 13 A 345 LEU ILE TYR ARG ASP LEU LYS PRO GLU ASN LEU LEU ILE SEQRES 14 A 345 ASP GLN GLN GLY TYR ILE GLN VAL THR ASP PHE GLY PHE SEQRES 15 A 345 ALA LYS ARG VAL LYS GLY ARG THR TRP TPO LEU CYS GLY SEQRES 16 A 345 THR PRO GLU TYR LEU ALA PRO GLU ILE ILE LEU SER LYS SEQRES 17 A 345 GLY TYR ASN LYS ALA VAL ASP TRP TRP ALA LEU GLY VAL SEQRES 18 A 345 LEU ILE TYR GLU MET ALA ALA GLY TYR PRO PRO PHE PHE SEQRES 19 A 345 ALA ASP GLN PRO ILE GLN ILE TYR GLU LYS ILE VAL SER SEQRES 20 A 345 GLY LYS VAL ARG PHE PRO SER HIS PHE SER SER ASP LEU SEQRES 21 A 345 LYS ASP LEU LEU ARG ASN LEU LEU GLN VAL ASP LEU THR SEQRES 22 A 345 LYS ARG PHE GLY ASN LEU LYS ASN GLY VAL ASN ASP ILE SEQRES 23 A 345 LYS ASN HIS LYS TRP PHE ALA THR THR ASP TRP ILE ALA SEQRES 24 A 345 ILE TYR GLN ARG LYS VAL GLU ALA PRO PHE ILE PRO LYS SEQRES 25 A 345 PHE LYS GLY PRO GLY ASP THR SER ASN PHE ASP ASP TYR SEQRES 26 A 345 GLU GLU GLU GLU ILE ARG VAL SEP ILE ASN GLU LYS CYS SEQRES 27 A 345 GLY LYS GLU PHE THR GLU PHE SEQRES 1 B 160 PRO PRO ASN PRO VAL VAL LYS GLY ARG ARG ARG ARG GLY SEQRES 2 B 160 ALA ILE SER ALA GLU VAL TYR THR GLU GLU ASP ALA ALA SEQRES 3 B 160 SER TYR VAL ARG LYS VAL ILE PRO LYS ASP TYR LYS THR SEQRES 4 B 160 MET ALA ALA LEU ALA LYS ALA ILE GLU LYS ASN VAL LEU SEQRES 5 B 160 PHE SER HIS LEU ASP ASP ASN GLU ARG SER ASP ILE PHE SEQRES 6 B 160 ASP ALA MET PHE PRO VAL SER PHE ILE ALA GLY GLU THR SEQRES 7 B 160 VAL ILE GLN GLN GLY ASP GLU GLY ASP ASN PHE TYR VAL SEQRES 8 B 160 ILE ASP GLN GLY GLU MET ASP VAL TYR VAL ASN ASN GLU SEQRES 9 B 160 TRP ALA THR SER VAL GLY GLU GLY GLY SER PHE GLY GLU SEQRES 10 B 160 LEU ALA LEU ILE TYR GLY THR PRO ARG ALA ALA THR VAL SEQRES 11 B 160 LYS ALA LYS THR ASN VAL LYS LEU TRP GLY ILE ASP ARG SEQRES 12 B 160 ASP SER TYR ARG ARG ILE LEU MET GLY SER THR LEU ARG SEQRES 13 B 160 LYS ARG LYS MET MODRES 3PVB SEP A 10 SER PHOSPHOSERINE MODRES 3PVB SEP A 139 SER PHOSPHOSERINE MODRES 3PVB TPO A 197 THR PHOSPHOTHREONINE MODRES 3PVB SEP A 338 SER PHOSPHOSERINE HET SEP A 10 10 HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET ANP A 400 31 HET MN A 401 1 HET MN A 402 1 HET GOL B 1 6 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MN 2(MN 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *15(H2 O) HELIX 1 1 SEP A 10 GLU A 31 1 22 HELIX 2 2 LYS A 76 LEU A 82 1 7 HELIX 3 3 GLN A 84 VAL A 98 1 15 HELIX 4 4 PHE A 129 ARG A 134 1 6 HELIX 5 5 SEP A 139 SER A 159 1 21 HELIX 6 6 LYS A 168 LEU A 172 5 5 HELIX 7 7 THR A 201 LEU A 205 5 5 HELIX 8 8 ALA A 206 SER A 212 1 7 HELIX 9 9 LYS A 217 ALA A 232 1 16 HELIX 10 10 GLN A 242 GLY A 253 1 12 HELIX 11 11 SER A 262 LEU A 273 1 12 HELIX 12 12 ASP A 276 ARG A 280 5 5 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 ARG A 308 1 8 HELIX 16 16 THR B 104 ALA B 109 1 6 HELIX 17 17 ASP B 119 ILE B 130 1 12 HELIX 18 18 ASP B 140 SER B 145 1 6 HELIX 19 19 SER B 145 MET B 151 1 7 HELIX 20 20 LEU B 201 GLY B 206 1 6 HELIX 21 21 ARG B 226 ARG B 239 1 14 SHEET 1 A 2 PHE A 43 ASP A 44 0 SHEET 2 A 2 LYS A 61 HIS A 62 -1 O LYS A 61 N ASP A 44 SHEET 1 B 5 THR A 48 THR A 51 0 SHEET 2 B 5 ARG A 56 MET A 58 -1 O VAL A 57 N LEU A 49 SHEET 3 B 5 TYR A 69 ASP A 75 -1 O ILE A 73 N ARG A 56 SHEET 4 B 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 B 5 LEU A 106 LYS A 111 -1 N PHE A 110 O TYR A 117 SHEET 1 C 2 CYS A 199 GLY A 200 0 SHEET 2 C 2 ILE B 98 SER B 99 -1 O ILE B 98 N GLY A 200 SHEET 1 D 4 PHE B 152 PHE B 156 0 SHEET 2 D 4 VAL B 219 ASP B 225 -1 O GLY B 223 N PHE B 152 SHEET 3 D 4 ASN B 171 GLY B 178 -1 N PHE B 172 O ILE B 224 SHEET 4 D 4 SER B 197 PHE B 198 -1 O PHE B 198 N TYR B 173 SHEET 1 E 3 TRP B 188 VAL B 192 0 SHEET 2 E 3 MET B 180 TYR B 183 -1 N VAL B 182 O THR B 190 SHEET 3 E 3 THR B 212 LYS B 214 -1 O THR B 212 N TYR B 183 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.32 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OD1 ASN A 171 MN MN A 401 1555 1555 1.77 LINK OD1 ASP A 184 MN MN A 402 1555 1555 2.22 LINK OD2 ASP A 184 MN MN A 402 1555 1555 2.61 LINK N3B ANP A 400 MN MN A 401 1555 1555 2.04 LINK O2A ANP A 400 MN MN A 401 1555 1555 2.20 LINK O2G ANP A 400 MN MN A 401 1555 1555 2.49 LINK O1G ANP A 400 MN MN A 402 1555 1555 2.02 SITE 1 AC1 23 GLY A 50 GLY A 52 SER A 53 PHE A 54 SITE 2 AC1 23 GLY A 55 VAL A 57 ALA A 70 LYS A 72 SITE 3 AC1 23 MET A 120 GLU A 121 VAL A 123 GLU A 127 SITE 4 AC1 23 LYS A 168 GLU A 170 ASN A 171 LEU A 173 SITE 5 AC1 23 THR A 183 ASP A 184 PHE A 327 MN A 401 SITE 6 AC1 23 MN A 402 ARG B 94 ALA B 97 SITE 1 AC2 3 ASN A 171 ASP A 184 ANP A 400 SITE 1 AC3 3 ASP A 166 ASP A 184 ANP A 400 SITE 1 AC4 5 GLU B 200 PRO B 208 ARG B 209 ALA B 210 SITE 2 AC4 5 ALA B 211 CRYST1 116.667 116.667 140.103 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008571 0.004949 0.000000 0.00000 SCALE2 0.000000 0.009897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007138 0.00000