HEADER TRANSCRIPTION 07-DEC-10 3PVE TITLE CRYSTAL STRUCTURE OF THE G2 DOMAIN OF AGRIN FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGRIN, AGRIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G2 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: AGRIN, AGRIN (NP_067617); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BS-PSGX4(BS); MODIFIED PET26B KEYWDS MRNA SPLICING, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, KEYWDS 3 NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,J.DO,K.BAIN,J.FREEMAN,T.GHEYI,S.ATWELL,D.A.THOMPSON, AUTHOR 2 J.S.EMTAGE,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 03-APR-24 3PVE 1 REMARK REVDAT 5 21-FEB-24 3PVE 1 REMARK REVDAT 4 10-FEB-21 3PVE 1 AUTHOR SEQADV REVDAT 3 21-NOV-18 3PVE 1 AUTHOR REVDAT 2 08-NOV-17 3PVE 1 REMARK REVDAT 1 19-JAN-11 3PVE 0 JRNL AUTH P.SAMPATHKUMAR JRNL TITL CRYSTAL STRUCTURE OF THE G2 DOMAIN OF AGRIN FROM MUS JRNL TITL 2 MUSCULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2730 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1827 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3727 ; 1.689 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4450 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ;13.458 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;29.521 ;22.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;11.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3122 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 0.995 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 732 ; 0.264 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2776 ; 1.698 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 977 ; 2.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 3.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD, CRANK REMARK 200 STARTING MODEL: ARP/WARP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE, 15% PEG 20000, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 LEU A 1449 REMARK 465 GLU A 1450 REMARK 465 ASN A 1451 REMARK 465 ALA A 1452 REMARK 465 GLY A 1453 REMARK 465 GLU A 1476 REMARK 465 ARG A 1477 REMARK 465 ASP A 1478 REMARK 465 LEU A 1479 REMARK 465 GLY A 1480 REMARK 465 GLU A 1481 REMARK 465 LYS A 1482 REMARK 465 ASP A 1506 REMARK 465 SER B 1448 REMARK 465 LEU B 1449 REMARK 465 GLU B 1450 REMARK 465 ASN B 1451 REMARK 465 ALA B 1452 REMARK 465 GLY B 1453 REMARK 465 GLU B 1476 REMARK 465 ARG B 1477 REMARK 465 ASP B 1478 REMARK 465 LEU B 1479 REMARK 465 GLY B 1480 REMARK 465 GLU B 1481 REMARK 465 ARG B 1615 REMARK 465 GLY B 1616 REMARK 465 PHE B 1634 REMARK 465 ALA B 1635 REMARK 465 GLY B 1636 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A1483 CG SD CE REMARK 470 LYS A1504 CG CD CE NZ REMARK 470 LYS A1508 CG CD CE NZ REMARK 470 LYS A1537 CG CD CE NZ REMARK 470 LYS A1581 CG CD CE NZ REMARK 470 LYS A1594 CG CD CE NZ REMARK 470 ARG A1597 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1615 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1622 CG CD OE1 NE2 REMARK 470 GLU A1623 CG CD OE1 OE2 REMARK 470 ARG B1455 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1482 CG CD CE NZ REMARK 470 MET B1483 CG SD CE REMARK 470 LYS B1508 CG CD CE NZ REMARK 470 LYS B1537 CG CD CE NZ REMARK 470 GLU B1551 CG CD OE1 OE2 REMARK 470 ASN B1553 CG OD1 ND2 REMARK 470 LYS B1581 CG CD CE NZ REMARK 470 ARG B1597 CG CD NE CZ NH1 NH2 REMARK 470 GLN B1622 CG CD OE1 NE2 REMARK 470 GLU B1623 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 1462 O HOH A 108 1465 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1574 C - N - CD ANGL. DEV. = -24.3 DEGREES REMARK 500 PRO B1574 C - N - CD ANGL. DEV. = -21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1508 -156.31 -121.51 REMARK 500 ARG A1519 -1.33 74.70 REMARK 500 LYS B1508 -166.25 -121.29 REMARK 500 ARG B1519 -3.70 75.52 REMARK 500 PRO B1574 -25.56 -143.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 1573 PRO A 1574 64.82 REMARK 500 VAL A 1573 PRO A 1574 64.45 REMARK 500 VAL B 1573 PRO B 1574 68.01 REMARK 500 VAL B 1573 PRO B 1574 68.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A1573 10.35 REMARK 500 VAL A1573 10.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13166A RELATED DB: TARGETDB DBREF 3PVE A 1449 1636 UNP Q6PCM6 Q6PCM6_MOUSE 777 964 DBREF 3PVE B 1449 1636 UNP Q6PCM6 Q6PCM6_MOUSE 777 964 SEQADV 3PVE SER A 1448 UNP Q6PCM6 EXPRESSION TAG SEQADV 3PVE SER B 1448 UNP Q6PCM6 EXPRESSION TAG SEQRES 1 A 189 SER LEU GLU ASN ALA GLY SER ARG PRO PHE LEU ALA ASP SEQRES 2 A 189 PHE ASN GLY PHE SER TYR LEU GLU LEU LYS GLY LEU HIS SEQRES 3 A 189 THR PHE GLU ARG ASP LEU GLY GLU LYS MET ALA LEU GLU SEQRES 4 A 189 MET VAL PHE LEU ALA ARG GLY PRO SER GLY LEU LEU LEU SEQRES 5 A 189 TYR ASN GLY GLN LYS THR ASP GLY LYS GLY ASP PHE VAL SEQRES 6 A 189 SER LEU ALA LEU HIS ASN ARG HIS LEU GLU PHE ARG TYR SEQRES 7 A 189 ASP LEU GLY LYS GLY ALA ALA ILE ILE ARG SER LYS GLU SEQRES 8 A 189 PRO ILE ALA LEU GLY THR TRP VAL ARG VAL PHE LEU GLU SEQRES 9 A 189 ARG ASN GLY ARG LYS GLY ALA LEU GLN VAL GLY ASP GLY SEQRES 10 A 189 PRO ARG VAL LEU GLY GLU SER PRO VAL PRO HIS THR MET SEQRES 11 A 189 LEU ASN LEU LYS GLU PRO LEU TYR VAL GLY GLY ALA PRO SEQRES 12 A 189 ASP PHE SER LYS LEU ALA ARG GLY ALA ALA VAL ALA SER SEQRES 13 A 189 GLY PHE ASP GLY ALA ILE GLN LEU VAL SER LEU ARG GLY SEQRES 14 A 189 HIS GLN LEU LEU THR GLN GLU HIS VAL LEU ARG ALA VAL SEQRES 15 A 189 ASP VAL ALA PRO PHE ALA GLY SEQRES 1 B 189 SER LEU GLU ASN ALA GLY SER ARG PRO PHE LEU ALA ASP SEQRES 2 B 189 PHE ASN GLY PHE SER TYR LEU GLU LEU LYS GLY LEU HIS SEQRES 3 B 189 THR PHE GLU ARG ASP LEU GLY GLU LYS MET ALA LEU GLU SEQRES 4 B 189 MET VAL PHE LEU ALA ARG GLY PRO SER GLY LEU LEU LEU SEQRES 5 B 189 TYR ASN GLY GLN LYS THR ASP GLY LYS GLY ASP PHE VAL SEQRES 6 B 189 SER LEU ALA LEU HIS ASN ARG HIS LEU GLU PHE ARG TYR SEQRES 7 B 189 ASP LEU GLY LYS GLY ALA ALA ILE ILE ARG SER LYS GLU SEQRES 8 B 189 PRO ILE ALA LEU GLY THR TRP VAL ARG VAL PHE LEU GLU SEQRES 9 B 189 ARG ASN GLY ARG LYS GLY ALA LEU GLN VAL GLY ASP GLY SEQRES 10 B 189 PRO ARG VAL LEU GLY GLU SER PRO VAL PRO HIS THR MET SEQRES 11 B 189 LEU ASN LEU LYS GLU PRO LEU TYR VAL GLY GLY ALA PRO SEQRES 12 B 189 ASP PHE SER LYS LEU ALA ARG GLY ALA ALA VAL ALA SER SEQRES 13 B 189 GLY PHE ASP GLY ALA ILE GLN LEU VAL SER LEU ARG GLY SEQRES 14 B 189 HIS GLN LEU LEU THR GLN GLU HIS VAL LEU ARG ALA VAL SEQRES 15 B 189 ASP VAL ALA PRO PHE ALA GLY FORMUL 3 HOH *270(H2 O) HELIX 1 1 GLY A 1471 PHE A 1475 5 5 HELIX 2 2 ASP A 1591 LEU A 1595 5 5 HELIX 3 3 ALA A 1596 ALA A 1600 5 5 HELIX 4 4 THR A 1621 GLU A 1623 5 3 HELIX 5 5 GLY B 1471 PHE B 1475 5 5 HELIX 6 6 ASP B 1591 LEU B 1595 5 5 HELIX 7 7 ALA B 1596 ALA B 1600 5 5 HELIX 8 8 THR B 1621 GLU B 1623 5 3 SHEET 1 A 6 VAL A1567 GLU A1570 0 SHEET 2 A 6 LYS A1556 VAL A1561 -1 N LEU A1559 O VAL A1567 SHEET 3 A 6 TRP A1545 ASN A1553 -1 N ASN A1553 O LYS A1556 SHEET 4 A 6 ALA A1484 ALA A1491 -1 N LEU A1485 O LEU A1550 SHEET 5 A 6 ASP A1606 LEU A1614 -1 O SER A1613 N GLU A1486 SHEET 6 A 6 HIS A1617 GLN A1618 -1 O HIS A1617 N LEU A1614 SHEET 1 B 7 VAL A1567 GLU A1570 0 SHEET 2 B 7 LYS A1556 VAL A1561 -1 N LEU A1559 O VAL A1567 SHEET 3 B 7 TRP A1545 ASN A1553 -1 N ASN A1553 O LYS A1556 SHEET 4 B 7 ALA A1484 ALA A1491 -1 N LEU A1485 O LEU A1550 SHEET 5 B 7 ASP A1606 LEU A1614 -1 O SER A1613 N GLU A1486 SHEET 6 B 7 ALA A1459 ASN A1462 -1 N PHE A1461 O GLY A1607 SHEET 7 B 7 ALA A1632 PRO A1633 -1 O ALA A1632 N ASP A1460 SHEET 1 C 7 ALA A1531 ARG A1535 0 SHEET 2 C 7 HIS A1520 ASP A1526 -1 N PHE A1523 O ILE A1534 SHEET 3 C 7 PHE A1511 HIS A1517 -1 N SER A1513 O ARG A1524 SHEET 4 C 7 GLY A1496 GLY A1502 -1 N GLY A1496 O LEU A1516 SHEET 5 C 7 LEU A1584 VAL A1586 -1 O TYR A1585 N TYR A1500 SHEET 6 C 7 TYR A1466 LEU A1469 -1 N LEU A1469 O LEU A1584 SHEET 7 C 7 VAL A1625 VAL A1629 -1 O VAL A1629 N TYR A1466 SHEET 1 D 6 ALA B1459 ASN B1462 0 SHEET 2 D 6 ASP B1606 SER B1613 -1 O GLY B1607 N PHE B1461 SHEET 3 D 6 MET B1483 ALA B1491 -1 N VAL B1488 O GLN B1610 SHEET 4 D 6 TRP B1545 ASN B1553 -1 O VAL B1546 N PHE B1489 SHEET 5 D 6 LYS B1556 VAL B1561 -1 O LYS B1556 N ASN B1553 SHEET 6 D 6 VAL B1567 GLU B1570 -1 O VAL B1567 N LEU B1559 SHEET 1 E 7 ALA B1531 ARG B1535 0 SHEET 2 E 7 HIS B1520 ASP B1526 -1 N PHE B1523 O ILE B1534 SHEET 3 E 7 PHE B1511 HIS B1517 -1 N SER B1513 O ARG B1524 SHEET 4 E 7 GLY B1496 GLY B1502 -1 N GLY B1496 O LEU B1516 SHEET 5 E 7 LEU B1584 VAL B1586 -1 O TYR B1585 N TYR B1500 SHEET 6 E 7 TYR B1466 LEU B1469 -1 N LEU B1469 O LEU B1584 SHEET 7 E 7 VAL B1625 VAL B1629 -1 O ARG B1627 N GLU B1468 CRYST1 41.620 45.580 51.510 72.28 68.53 65.44 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024027 -0.010980 -0.007599 0.00000 SCALE2 0.000000 0.024122 -0.004410 0.00000 SCALE3 0.000000 0.000000 0.021207 0.00000