HEADER MOTOR PROTEIN/PROTEIN TRANSPORT 07-DEC-10 3PVL TITLE STRUCTURE OF MYOSIN VIIA MYTH4-FERM-SH3 IN COMPLEX WITH THE CEN1 OF TITLE 2 SANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN VIIA ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYTH4-FERM-SH3 REGION; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: USHER SYNDROME TYPE-1G PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: CENTRAL REGION OF SANS, THE CEN1 MOTIF; COMPND 10 SYNONYM: SCAFFOLD PROTEIN CONTAINING ANKYRIN REPEATS AND SAM DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MYO7A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET32A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: USH1G, SANS; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX4T-1 KEYWDS PROTEIN COMPLEX, NOVEL FOLDING, PROTEIN CARGO BINDING, CARGO KEYWDS 2 PROTEINS, MOTOR PROTEIN-PROTEIN TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WU,L.F.PAN,Z.Y.WEI,M.J.ZHANG REVDAT 2 20-MAR-24 3PVL 1 REMARK SEQADV REVDAT 1 02-MAR-11 3PVL 0 JRNL AUTH L.WU,L.PAN,Z.WEI,M.ZHANG JRNL TITL STRUCTURE OF MYTH4-FERM DOMAINS IN MYOSIN VIIA TAIL BOUND TO JRNL TITL 2 CARGO. JRNL REF SCIENCE V. 331 757 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21311020 JRNL DOI 10.1126/SCIENCE.1198848 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.700 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5066 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6852 ; 0.980 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 4.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;34.239 ;23.465 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;16.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3799 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3062 ; 1.402 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4950 ; 2.645 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 3.380 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1901 ; 5.585 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 31.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MGCL2, 0.1M HEPES, PH 7.5, 22% REMARK 280 (W/V) POLYACRYLIC ACID SODIUM SALT 5100, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.75933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.51867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.51867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.75933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 965 REMARK 465 GLY A 966 REMARK 465 PHE A 967 REMARK 465 GLU A 968 REMARK 465 ASP A 969 REMARK 465 LEU A 970 REMARK 465 GLU A 971 REMARK 465 ARG A 972 REMARK 465 GLY A 973 REMARK 465 ARG A 974 REMARK 465 ARG A 975 REMARK 465 GLU A 976 REMARK 465 MET A 977 REMARK 465 VAL A 978 REMARK 465 GLU A 979 REMARK 465 GLU A 980 REMARK 465 ASP A 981 REMARK 465 VAL A 982 REMARK 465 ASP A 983 REMARK 465 ALA A 984 REMARK 465 ALA A 985 REMARK 465 LEU A 986 REMARK 465 PRO A 987 REMARK 465 LEU A 988 REMARK 465 PRO A 989 REMARK 465 ASP A 990 REMARK 465 GLU A 991 REMARK 465 ASP A 992 REMARK 465 THR A 1059 REMARK 465 ALA A 1060 REMARK 465 MET A 1061 REMARK 465 SER A 1062 REMARK 465 ASP A 1063 REMARK 465 GLY A 1064 REMARK 465 SER A 1065 REMARK 465 GLU A 1066 REMARK 465 GLY A 1122 REMARK 465 GLU A 1123 REMARK 465 GLY A 1124 REMARK 465 GLU A 1125 REMARK 465 VAL A 1126 REMARK 465 THR A 1127 REMARK 465 LYS A 1128 REMARK 465 ARG A 1129 REMARK 465 LEU A 1130 REMARK 465 ASN A 1131 REMARK 465 ASP A 1132 REMARK 465 GLY A 1133 REMARK 465 GLU A 1134 REMARK 465 SER A 1135 REMARK 465 THR A 1136 REMARK 465 VAL A 1137 REMARK 465 PRO A 1579 REMARK 465 ALA A 1580 REMARK 465 GLY A 1581 REMARK 465 GLU A 1582 REMARK 465 GLU A 1583 REMARK 465 THR A 1649 REMARK 465 SER B 295 REMARK 465 GLU B 296 REMARK 465 VAL B 297 REMARK 465 SER B 298 REMARK 465 THR B 299 REMARK 465 ASP B 300 REMARK 465 SER B 301 REMARK 465 GLY B 302 REMARK 465 HIS B 303 REMARK 465 ASP B 304 REMARK 465 TYR B 321 REMARK 465 LEU B 322 REMARK 465 SER B 323 REMARK 465 SER B 324 REMARK 465 GLY B 325 REMARK 465 LEU B 326 REMARK 465 HIS B 327 REMARK 465 GLY B 328 REMARK 465 LEU B 329 REMARK 465 GLY B 330 REMARK 465 ARG B 331 REMARK 465 GLU B 332 REMARK 465 ASP B 333 REMARK 465 GLY B 334 REMARK 465 GLY B 335 REMARK 465 LEU B 336 REMARK 465 ASP B 337 REMARK 465 GLY B 338 REMARK 465 VAL B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 PRO B 342 REMARK 465 ARG B 343 REMARK 465 GLY B 344 REMARK 465 ARG B 345 REMARK 465 LEU B 346 REMARK 465 GLN B 347 REMARK 465 SER B 348 REMARK 465 SER B 349 REMARK 465 PRO B 350 REMARK 465 SER B 351 REMARK 465 LEU B 352 REMARK 465 ASP B 353 REMARK 465 ASP B 354 REMARK 465 ASP B 355 REMARK 465 SER B 356 REMARK 465 LEU B 357 REMARK 465 GLY B 358 REMARK 465 SER B 359 REMARK 465 ALA B 360 REMARK 465 ASN B 361 REMARK 465 SER B 362 REMARK 465 LEU B 363 REMARK 465 GLN B 364 REMARK 465 ASP B 365 REMARK 465 ARG B 366 REMARK 465 SER B 367 REMARK 465 CYS B 368 REMARK 465 GLY B 369 REMARK 465 GLU B 370 REMARK 465 GLU B 371 REMARK 465 LEU B 372 REMARK 465 PRO B 373 REMARK 465 TRP B 374 REMARK 465 ASP B 375 REMARK 465 GLU B 376 REMARK 465 LEU B 377 REMARK 465 ASP B 378 REMARK 465 LEU B 379 REMARK 465 GLY B 380 REMARK 465 LEU B 381 REMARK 465 ASP B 382 REMARK 465 GLU B 383 REMARK 465 ASP B 384 REMARK 465 LEU B 385 REMARK 465 GLU B 386 REMARK 465 PRO B 387 REMARK 465 GLU B 388 REMARK 465 THR B 389 REMARK 465 SER B 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1020 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1023 CG CD CE NZ REMARK 470 LYS A1067 CG CD CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 470 GLN A1091 CG CD OE1 NE2 REMARK 470 ASP A1145 CG OD1 OD2 REMARK 470 ASP A1307 CG OD1 OD2 REMARK 470 GLU A1383 CG CD OE1 OE2 REMARK 470 LYS A1526 CG CD CE NZ REMARK 470 ASN A1578 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A1017 134.66 -36.11 REMARK 500 LYS A1081 48.24 -145.54 REMARK 500 ALA A1166 1.45 -69.84 REMARK 500 ASP A1307 12.91 58.88 REMARK 500 PRO A1341 43.14 -88.39 REMARK 500 TYR A1400 -10.11 -140.95 REMARK 500 ARG A1420 -28.84 -39.89 REMARK 500 TRP A1466 53.86 -119.48 REMARK 500 ASP A1502 -166.78 -107.84 REMARK 500 MET A1527 -71.58 -102.09 REMARK 500 ASP A1598 -69.31 -124.90 REMARK 500 LYS A1619 5.93 59.70 REMARK 500 LEU B 312 -65.40 -136.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 11 DBREF 3PVL A 965 1649 UNP Q5MJ57 Q5MJ57_MOUSE 954 1638 DBREF 3PVL B 295 390 UNP Q495M9 USH1G_HUMAN 295 390 SEQADV 3PVL A UNP Q5MJ57 GLU 1084 DELETION SEQADV 3PVL A UNP Q5MJ57 THR 1085 DELETION SEQADV 3PVL A UNP Q5MJ57 GLN 1086 DELETION SEQADV 3PVL A UNP Q5MJ57 LEU 1087 DELETION SEQADV 3PVL A UNP Q5MJ57 PRO 1088 DELETION SEQADV 3PVL A UNP Q5MJ57 GLU 1089 DELETION SEQADV 3PVL A UNP Q5MJ57 GLY 1090 DELETION SEQADV 3PVL A UNP Q5MJ57 GLN 1091 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1092 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1093 DELETION SEQADV 3PVL A UNP Q5MJ57 THR 1094 DELETION SEQADV 3PVL A UNP Q5MJ57 SER 1095 DELETION SEQADV 3PVL A UNP Q5MJ57 VAL 1096 DELETION SEQADV 3PVL A UNP Q5MJ57 ARG 1097 DELETION SEQADV 3PVL A UNP Q5MJ57 HIS 1098 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1099 DELETION SEQADV 3PVL A UNP Q5MJ57 LEU 1100 DELETION SEQADV 3PVL A UNP Q5MJ57 VAL 1101 DELETION SEQADV 3PVL A UNP Q5MJ57 HIS 1102 DELETION SEQADV 3PVL A UNP Q5MJ57 LEU 1103 DELETION SEQADV 3PVL A UNP Q5MJ57 THR 1104 DELETION SEQADV 3PVL A UNP Q5MJ57 LEU 1105 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1106 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1107 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1108 DELETION SEQADV 3PVL A UNP Q5MJ57 SER 1109 DELETION SEQADV 3PVL A UNP Q5MJ57 LYS 1110 DELETION SEQADV 3PVL A UNP Q5MJ57 LEU 1111 DELETION SEQADV 3PVL A UNP Q5MJ57 THR 1112 DELETION SEQADV 3PVL A UNP Q5MJ57 GLU 1113 DELETION SEQRES 1 A 655 SER GLY PHE GLU ASP LEU GLU ARG GLY ARG ARG GLU MET SEQRES 2 A 655 VAL GLU GLU ASP VAL ASP ALA ALA LEU PRO LEU PRO ASP SEQRES 3 A 655 GLU ASP GLU GLU ASP LEU SER GLU TYR LYS PHE ALA LYS SEQRES 4 A 655 PHE ALA ALA THR TYR PHE GLN GLY THR THR THR HIS SER SEQRES 5 A 655 TYR THR ARG ARG PRO LEU LYS GLN PRO LEU LEU TYR HIS SEQRES 6 A 655 ASP ASP GLU GLY ASP GLN LEU ALA ALA LEU ALA VAL TRP SEQRES 7 A 655 ILE THR ILE LEU ARG PHE MET GLY ASP LEU PRO GLU PRO SEQRES 8 A 655 LYS TYR HIS THR ALA MET SER ASP GLY SER GLU LYS ILE SEQRES 9 A 655 PRO VAL MET THR LYS ILE TYR GLU THR LEU GLY LYS LYS SEQRES 10 A 655 THR TYR LYS ARG GLU LEU GLN ALA LEU GLN GLY GLU GLY SEQRES 11 A 655 GLU VAL THR LYS ARG LEU ASN ASP GLY GLU SER THR VAL SEQRES 12 A 655 GLN GLY ASN SER MET LEU GLU ASP ARG PRO THR SER ASN SEQRES 13 A 655 LEU GLU LYS LEU HIS PHE ILE ILE GLY ASN GLY ILE LEU SEQRES 14 A 655 ARG PRO ALA LEU ARG ASP GLU ILE TYR CYS GLN ILE SER SEQRES 15 A 655 LYS GLN LEU THR HIS ASN PRO SER LYS SER SER TYR ALA SEQRES 16 A 655 ARG GLY TRP ILE LEU VAL SER LEU CYS VAL GLY CYS PHE SEQRES 17 A 655 ALA PRO SER GLU LYS PHE VAL LYS TYR LEU ARG ASN PHE SEQRES 18 A 655 ILE HIS GLY GLY PRO PRO GLY TYR ALA PRO TYR CYS GLU SEQRES 19 A 655 GLU ARG LEU ARG ARG THR PHE VAL ASN GLY THR ARG THR SEQRES 20 A 655 GLN PRO PRO SER TRP LEU GLU LEU GLN ALA THR LYS SER SEQRES 21 A 655 LYS LYS PRO ILE MET LEU PRO VAL THR PHE MET ASP GLY SEQRES 22 A 655 THR THR LYS THR LEU LEU THR ASP SER ALA THR THR ALA SEQRES 23 A 655 ARG GLU LEU CYS ASN ALA LEU ALA ASP LYS ILE SER LEU SEQRES 24 A 655 LYS ASP ARG PHE GLY PHE SER LEU TYR ILE ALA LEU PHE SEQRES 25 A 655 ASP LYS VAL SER SER LEU GLY SER GLY SER ASP HIS VAL SEQRES 26 A 655 MET ASP ALA ILE SER GLN CYS GLU GLN TYR ALA LYS GLU SEQRES 27 A 655 GLN GLY ALA GLN GLU ARG ASN ALA PRO TRP ARG LEU PHE SEQRES 28 A 655 PHE ARG LYS GLU VAL PHE THR PRO TRP HIS ASN PRO SER SEQRES 29 A 655 GLU ASP ASN VAL ALA THR ASN LEU ILE TYR GLN GLN VAL SEQRES 30 A 655 VAL ARG GLY VAL LYS PHE GLY GLU TYR ARG CYS GLU LYS SEQRES 31 A 655 GLU ASP ASP LEU ALA GLU LEU ALA SER GLN GLN TYR PHE SEQRES 32 A 655 VAL ASP TYR GLY SER GLU MET ILE LEU GLU ARG LEU LEU SEQRES 33 A 655 SER LEU VAL PRO THR TYR ILE PRO ASP ARG GLU ILE THR SEQRES 34 A 655 PRO LEU LYS ASN LEU GLU LYS TRP ALA GLN LEU ALA ILE SEQRES 35 A 655 ALA ALA HIS LYS LYS GLY ILE TYR ALA GLN ARG ARG THR SEQRES 36 A 655 ASP SER GLN LYS VAL LYS GLU ASP VAL VAL ASN TYR ALA SEQRES 37 A 655 ARG PHE LYS TRP PRO LEU LEU PHE SER ARG PHE TYR GLU SEQRES 38 A 655 ALA TYR LYS PHE SER GLY PRO PRO LEU PRO LYS SER ASP SEQRES 39 A 655 VAL ILE VAL ALA VAL ASN TRP THR GLY VAL TYR PHE VAL SEQRES 40 A 655 ASP GLU GLN GLU GLN VAL LEU LEU GLU LEU SER PHE PRO SEQRES 41 A 655 GLU ILE MET ALA VAL SER SER SER ARG GLY THR LYS MET SEQRES 42 A 655 MET ALA PRO SER PHE THR LEU ALA THR ILE LYS GLY ASP SEQRES 43 A 655 GLU TYR THR PHE THR SER SER ASN ALA GLU ASP ILE ARG SEQRES 44 A 655 ASP LEU VAL VAL THR PHE LEU GLU GLY LEU ARG LYS ARG SEQRES 45 A 655 SER LYS TYR VAL VAL ALA LEU GLN ASP ASN PRO ASN PRO SEQRES 46 A 655 ALA GLY GLU GLU SER GLY PHE LEU SER PHE ALA LYS GLY SEQRES 47 A 655 ASP LEU ILE ILE LEU ASP HIS ASP THR GLY GLU GLN VAL SEQRES 48 A 655 MET ASN SER GLY TRP ALA ASN GLY ILE ASN GLU ARG THR SEQRES 49 A 655 LYS GLN ARG GLY ASP PHE PRO THR ASP CYS VAL TYR VAL SEQRES 50 A 655 MET PRO THR VAL THR LEU PRO PRO ARG GLU ILE VAL ALA SEQRES 51 A 655 LEU VAL THR MET THR SEQRES 1 B 96 SER GLU VAL SER THR ASP SER GLY HIS ASP SER LEU PHE SEQRES 2 B 96 THR ARG PRO GLY LEU GLY THR MET VAL PHE ARG ARG ASN SEQRES 3 B 96 TYR LEU SER SER GLY LEU HIS GLY LEU GLY ARG GLU ASP SEQRES 4 B 96 GLY GLY LEU ASP GLY VAL GLY ALA PRO ARG GLY ARG LEU SEQRES 5 B 96 GLN SER SER PRO SER LEU ASP ASP ASP SER LEU GLY SER SEQRES 6 B 96 ALA ASN SER LEU GLN ASP ARG SER CYS GLY GLU GLU LEU SEQRES 7 B 96 PRO TRP ASP GLU LEU ASP LEU GLY LEU ASP GLU ASP LEU SEQRES 8 B 96 GLU PRO GLU THR SER HET GOL A 1 6 HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET GOL A 7 6 HET GOL A 8 6 HET GOL A 9 6 HET PO4 A 11 5 HET GOL B 6 6 HET PO4 B 10 5 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 11 PO4 2(O4 P 3-) FORMUL 14 HOH *38(H2 O) HELIX 1 1 LYS A 1000 PHE A 1009 1 10 HELIX 2 2 ASP A 1031 MET A 1049 1 19 HELIX 3 3 PRO A 1069 GLU A 1076 1 8 HELIX 4 4 TYR A 1083 ALA A 1089 1 7 HELIX 5 5 SER A 1149 ARG A 1164 1 16 HELIX 6 6 LEU A 1167 LEU A 1179 1 13 HELIX 7 7 SER A 1184 PHE A 1202 1 19 HELIX 8 8 PHE A 1208 GLY A 1218 1 11 HELIX 9 9 TYR A 1223 GLY A 1238 1 16 HELIX 10 10 SER A 1245 LYS A 1255 1 11 HELIX 11 11 THR A 1279 ILE A 1291 1 13 HELIX 12 12 HIS A 1318 GLU A 1332 1 15 HELIX 13 13 GLN A 1336 ALA A 1340 5 5 HELIX 14 14 ASN A 1356 GLU A 1359 5 4 HELIX 15 15 ASP A 1360 PHE A 1377 1 18 HELIX 16 16 LYS A 1384 GLY A 1401 1 18 HELIX 17 17 ILE A 1405 ILE A 1417 1 13 HELIX 18 18 PRO A 1418 ILE A 1422 5 5 HELIX 19 19 ASN A 1427 ALA A 1445 1 19 HELIX 20 20 ASP A 1450 TRP A 1466 1 17 HELIX 21 21 ASN A 1548 SER A 1567 1 20 HELIX 22 22 THR A 1601 SER A 1608 1 8 HELIX 23 23 PRO A 1639 THR A 1647 1 9 SHEET 1 A 7 THR A1269 THR A1274 0 SHEET 2 A 7 ILE A1258 PHE A1264 -1 N ILE A1258 O THR A1274 SHEET 3 A 7 ARG A1343 LYS A1348 1 O LEU A1344 N THR A1263 SHEET 4 A 7 PHE A1299 LEU A1305 -1 N SER A1300 O ARG A1347 SHEET 5 A 7 LYS A1308 GLY A1313 -1 O LEU A1312 N LEU A1301 SHEET 6 A 7 GLY B 313 MET B 315 1 O THR B 314 N VAL A1309 SHEET 7 A 7 THR B 308 ARG B 309 -1 N ARG B 309 O GLY B 313 SHEET 1 B 7 VAL A1507 SER A1512 0 SHEET 2 B 7 GLY A1497 VAL A1501 -1 N PHE A1500 O LEU A1508 SHEET 3 B 7 ASP A1488 ASN A1494 -1 N ALA A1492 O TYR A1499 SHEET 4 B 7 ARG A1472 SER A1480 -1 N TYR A1474 O VAL A1491 SHEET 5 B 7 GLU A1541 THR A1545 -1 O THR A1543 N PHE A1479 SHEET 6 B 7 SER A1531 THR A1536 -1 N PHE A1532 O PHE A1544 SHEET 7 B 7 ILE A1516 SER A1522 -1 N MET A1517 O ALA A1535 SHEET 1 C 5 ARG A1621 PRO A1625 0 SHEET 2 C 5 TRP A1610 ASN A1615 -1 N ALA A1611 O PHE A1624 SHEET 3 C 5 LEU A1594 ILE A1596 -1 N ILE A1596 O ILE A1614 SHEET 4 C 5 TYR A1569 ALA A1572 -1 N VAL A1570 O ILE A1595 SHEET 5 C 5 VAL A1629 VAL A1631 -1 O TYR A1630 N VAL A1571 SITE 1 AC1 5 GLU A1475 LYS A1486 ASP A1488 ASP A1502 SITE 2 AC1 5 GLU A1503 SITE 1 AC2 3 PRO A1467 TYR A1499 GLU A1510 SITE 1 AC3 4 GLU A1383 GLU A1385 GLU A1421 LYS A1426 SITE 1 AC4 4 PRO A1482 LYS A1538 ASP A1540 TYR A1542 SITE 1 AC5 5 HIS A1029 ASP A1030 ASP A1031 ASP A1034 SITE 2 AC5 5 ALA A1166 SITE 1 AC6 4 PO4 A 11 ARG A1373 PO4 B 10 GLY B 311 SITE 1 AC7 1 TYR A1329 SITE 1 AC8 3 PHE A1397 VAL A1398 ASP A1399 SITE 1 AC9 2 VAL A1507 LEU A1508 SITE 1 BC1 6 GOL B 6 ARG B 309 PRO B 310 GLY B 311 SITE 2 BC1 6 LEU B 312 GLY B 313 SITE 1 BC2 2 ARG A1343 GOL B 6 CRYST1 98.864 98.864 242.278 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010115 0.005840 0.000000 0.00000 SCALE2 0.000000 0.011680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004127 0.00000