HEADER DNA BINDING PROTEIN/DNA 07-DEC-10 3PVP TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DNAA-DBD IN COMPLEX WITH BOX2 TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNAA DBD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3'); COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3'); COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: ATCC 25177 / H37RA; SOURCE 5 GENE: DNAA, MRA_0001, RV0001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS HELICAL, DNA REPLICATION, DNA BINDING, DNAA-BOX, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.V.TSODIKOV,T.BISWAS REVDAT 4 21-FEB-24 3PVP 1 SEQADV REVDAT 3 06-JUL-11 3PVP 1 JRNL REVDAT 2 15-JUN-11 3PVP 1 JRNL REVDAT 1 25-MAY-11 3PVP 0 JRNL AUTH O.V.TSODIKOV,T.BISWAS JRNL TITL STRUCTURAL AND THERMODYNAMIC SIGNATURES OF DNA RECOGNITION JRNL TITL 2 BY MYCOBACTERIUM TUBERCULOSIS DNAA. JRNL REF J.MOL.BIOL. V. 410 461 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21620858 JRNL DOI 10.1016/J.JMB.2011.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 18916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 919 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1516 REMARK 3 NUCLEIC ACID ATOMS : 1054 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2714 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3874 ; 0.924 ; 2.449 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 4.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;31.446 ;21.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;16.142 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1670 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 411 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8790 24.7440 22.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.4140 T22: 0.4332 REMARK 3 T33: 0.1706 T12: 0.0019 REMARK 3 T13: 0.0148 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4641 L22: 1.3791 REMARK 3 L33: 1.2580 L12: 0.9342 REMARK 3 L13: 0.4871 L23: -0.4783 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.0664 S13: 0.0307 REMARK 3 S21: -0.0676 S22: -0.0050 S23: 0.0303 REMARK 3 S31: 0.0351 S32: 0.0791 S33: 0.0820 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 411 B 505 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5860 44.3400 10.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.4340 T22: 0.4380 REMARK 3 T33: 0.1753 T12: -0.0063 REMARK 3 T13: -0.0269 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.9000 L22: 1.4314 REMARK 3 L33: 1.5124 L12: 0.0024 REMARK 3 L13: 0.3775 L23: 0.5670 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: 0.2073 S13: 0.1571 REMARK 3 S21: -0.1570 S22: 0.0255 S23: 0.0068 REMARK 3 S31: -0.1555 S32: 0.0983 S33: 0.0649 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 101 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): -52.2920 18.1810 17.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.4222 T22: 0.4112 REMARK 3 T33: 0.1839 T12: -0.0267 REMARK 3 T13: -0.0480 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.6094 L22: 1.5074 REMARK 3 L33: 3.7603 L12: 0.8831 REMARK 3 L13: -1.3373 L23: -2.3628 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0555 S13: 0.0227 REMARK 3 S21: -0.1972 S22: 0.1599 S23: 0.0527 REMARK 3 S31: 0.4283 S32: -0.2445 S33: -0.1509 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 201 D 213 REMARK 3 ORIGIN FOR THE GROUP (A): -50.8490 18.3750 17.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.4423 T22: 0.3175 REMARK 3 T33: 0.1619 T12: -0.0336 REMARK 3 T13: -0.0063 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.4371 L22: 0.3156 REMARK 3 L33: 8.1993 L12: -0.1217 REMARK 3 L13: -1.3617 L23: -0.5374 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.0098 S13: -0.0234 REMARK 3 S21: -0.0641 S22: 0.1041 S23: 0.0776 REMARK 3 S31: 0.2891 S32: -0.5842 S33: -0.0681 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 101 E 113 REMARK 3 ORIGIN FOR THE GROUP (A): -47.4310 54.9050 19.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.5758 T22: 0.5235 REMARK 3 T33: 0.2038 T12: 0.0409 REMARK 3 T13: -0.0971 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.1722 L22: 0.4870 REMARK 3 L33: 2.3389 L12: 0.1142 REMARK 3 L13: -0.1044 L23: 0.8136 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.0311 S13: -0.0043 REMARK 3 S21: -0.1443 S22: 0.0489 S23: 0.0129 REMARK 3 S31: -0.4786 S32: -0.2478 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 201 F 213 REMARK 3 ORIGIN FOR THE GROUP (A): -46.1230 54.6990 18.6530 REMARK 3 T TENSOR REMARK 3 T11: 0.5471 T22: 0.3179 REMARK 3 T33: 0.2181 T12: -0.0070 REMARK 3 T13: -0.0839 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.4581 L22: 0.7858 REMARK 3 L33: 3.0389 L12: -1.0086 REMARK 3 L13: 0.5141 L23: -1.2427 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.2117 S13: 0.1713 REMARK 3 S21: 0.0532 S22: 0.1653 S23: 0.0225 REMARK 3 S31: -0.0982 S32: -0.3191 S33: -0.1195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS, 2 MM MGCL2, 50 MM NACL, REMARK 280 1200 MM NH4SO4, 2-5% GLYCEROL, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.10800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.05400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.05400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.10800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 407 REMARK 465 PRO A 408 REMARK 465 HIS A 409 REMARK 465 MET A 410 REMARK 465 ARG A 507 REMARK 465 GLY B 407 REMARK 465 PRO B 408 REMARK 465 HIS B 409 REMARK 465 MET B 410 REMARK 465 LYS B 506 REMARK 465 ARG B 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 486 CD OE1 OE2 REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 GLU B 429 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 101 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 108 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA C 109 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 202 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 212 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 213 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC E 101 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 102 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 504 21.70 -69.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PVV RELATED DB: PDB DBREF 3PVP A 411 507 UNP A5TY69 DNAA_MYCTA 411 507 DBREF 3PVP B 411 507 UNP A5TY69 DNAA_MYCTA 411 507 DBREF 3PVP C 101 113 PDB 3PVP 3PVP 101 113 DBREF 3PVP E 101 113 PDB 3PVP 3PVP 101 113 DBREF 3PVP D 201 213 PDB 3PVP 3PVP 201 213 DBREF 3PVP F 201 213 PDB 3PVP 3PVP 201 213 SEQADV 3PVP GLY A 407 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP PRO A 408 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP HIS A 409 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP MET A 410 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP GLY B 407 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP PRO B 408 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP HIS B 409 UNP A5TY69 EXPRESSION TAG SEQADV 3PVP MET B 410 UNP A5TY69 EXPRESSION TAG SEQRES 1 A 101 GLY PRO HIS MET ILE SER ALA ALA THR ILE MET ALA ALA SEQRES 2 A 101 THR ALA GLU TYR PHE ASP THR THR VAL GLU GLU LEU ARG SEQRES 3 A 101 GLY PRO GLY LYS THR ARG ALA LEU ALA GLN SER ARG GLN SEQRES 4 A 101 ILE ALA MET TYR LEU CYS ARG GLU LEU THR ASP LEU SER SEQRES 5 A 101 LEU PRO LYS ILE GLY GLN ALA PHE GLY ARG ASP HIS THR SEQRES 6 A 101 THR VAL MET TYR ALA GLN ARG LYS ILE LEU SER GLU MET SEQRES 7 A 101 ALA GLU ARG ARG GLU VAL PHE ASP HIS VAL LYS GLU LEU SEQRES 8 A 101 THR THR ARG ILE ARG GLN ARG SER LYS ARG SEQRES 1 B 101 GLY PRO HIS MET ILE SER ALA ALA THR ILE MET ALA ALA SEQRES 2 B 101 THR ALA GLU TYR PHE ASP THR THR VAL GLU GLU LEU ARG SEQRES 3 B 101 GLY PRO GLY LYS THR ARG ALA LEU ALA GLN SER ARG GLN SEQRES 4 B 101 ILE ALA MET TYR LEU CYS ARG GLU LEU THR ASP LEU SER SEQRES 5 B 101 LEU PRO LYS ILE GLY GLN ALA PHE GLY ARG ASP HIS THR SEQRES 6 B 101 THR VAL MET TYR ALA GLN ARG LYS ILE LEU SER GLU MET SEQRES 7 B 101 ALA GLU ARG ARG GLU VAL PHE ASP HIS VAL LYS GLU LEU SEQRES 8 B 101 THR THR ARG ILE ARG GLN ARG SER LYS ARG SEQRES 1 C 13 DC DG DT DT DA DT DC DC DA DC DA DA DC SEQRES 1 D 13 DG DT DT DG DT DG DG DA DT DA DA DC DG SEQRES 1 E 13 DC DG DT DT DA DT DC DC DA DC DA DA DC SEQRES 1 F 13 DG DT DT DG DT DG DG DA DT DA DA DC DG FORMUL 7 HOH *84(H2 O) HELIX 1 1 SER A 412 PHE A 424 1 13 HELIX 2 2 THR A 427 GLY A 433 1 7 HELIX 3 3 THR A 437 THR A 455 1 19 HELIX 4 4 SER A 458 PHE A 466 1 9 HELIX 5 5 ASP A 469 ARG A 487 1 19 HELIX 6 6 ARG A 487 SER A 505 1 19 HELIX 7 7 SER B 412 PHE B 424 1 13 HELIX 8 8 THR B 427 GLY B 433 1 7 HELIX 9 9 THR B 437 THR B 455 1 19 HELIX 10 10 SER B 458 GLY B 467 1 10 HELIX 11 11 ASP B 469 ARG B 487 1 19 HELIX 12 12 ARG B 487 ARG B 504 1 18 CRYST1 88.677 88.677 105.162 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011277 0.006511 0.000000 0.00000 SCALE2 0.000000 0.013021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009509 0.00000