HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-DEC-10 3PZ3 TITLE CRYSTAL STRUCTURE OF RABGGTASE(DELTA LRR; DELTA IG) IN COMPLEX WITH TITLE 2 BMS-ANALOGUE 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-237 AND 353-441; COMPND 5 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT ALPHA, RAB COMPND 6 GERANYL-GERANYLTRANSFERASE SUBUNIT ALPHA, RAB GG TRANSFERASE ALPHA, COMPND 7 RAB GGTASE ALPHA, RAB GERANYLGERANYLTRANSFERASE SUBUNIT ALPHA; COMPND 8 EC: 2.5.1.60; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: RESIDUES 1-237 AND 353-441 WERE LINKED BY BY A FOUR COMPND 11 RESIDUES LINKER AGSG.; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: UNP RESIDUES 10-339; COMPND 16 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT BETA, GGTASE-II- COMPND 17 BETA, RAB GERANYL-GERANYLTRANSFERASE SUBUNIT BETA, RAB GG TRANSFERASE COMPND 18 BETA, RAB GGTASE BETA, RAB GERANYLGERANYLTRANSFERASE SUBUNIT BETA, COMPND 19 TYPE II PROTEIN GERANYL-GERANYLTRANSFERASE SUBUNIT BETA; COMPND 20 EC: 2.5.1.60; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RABGGTA, GGTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS RIL (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGATEV AND PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: RABGGTB, GGTB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS RIL (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGATEV AND PET30A KEYWDS PROTEIN PRENYLATION, FUSION PROTEIN, CHIMERA PROTEIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,R.S.BON,E.A.STIGTER,H.WALDMANN,K.ALEXANDROV,W.BLANKENFELDT, AUTHOR 2 R.S.GOODY REVDAT 6 13-SEP-23 3PZ3 1 REMARK SEQADV LINK REVDAT 5 09-AUG-17 3PZ3 1 SOURCE REMARK REVDAT 4 15-JAN-14 3PZ3 1 DBREF SEQADV SOURCE REVDAT 3 20-JUL-11 3PZ3 1 REMARK REVDAT 2 25-MAY-11 3PZ3 1 JRNL REVDAT 1 11-MAY-11 3PZ3 0 JRNL AUTH R.S.BON,Z.GUO,E.A.STIGTER,S.WETZEL,S.MENNINGER,A.WOLF, JRNL AUTH 2 A.CHOIDAS,K.ALEXANDROV,W.BLANKENFELDT,R.S.GOODY,H.WALDMANN JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF SELECTIVE RABGGTASE JRNL TITL 2 INHIBITORS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 50 4957 2011 JRNL REFN ISSN 1433-7851 JRNL PMID 21520375 JRNL DOI 10.1002/ANIE.201101210 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5231 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3521 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7117 ; 1.194 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8538 ; 4.179 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 5.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;35.915 ;24.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 875 ;15.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 781 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5822 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1061 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1339 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3513 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2573 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2266 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 352 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.364 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.165 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3174 ; 1.207 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1280 ; 3.066 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5097 ; 2.078 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2057 ; 2.697 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2011 ; 4.278 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9896 6.7395 15.8141 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0123 REMARK 3 T33: -0.0007 T12: 0.0001 REMARK 3 T13: 0.0000 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0006 L22: 0.0002 REMARK 3 L33: 0.0037 L12: 0.0004 REMARK 3 L13: 0.0014 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0001 S13: 0.0001 REMARK 3 S21: 0.0000 S22: -0.0001 S23: 0.0003 REMARK 3 S31: 0.0002 S32: 0.0003 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 331 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9664 25.9887 18.0633 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0122 REMARK 3 T33: -0.0005 T12: 0.0001 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0018 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0003 S13: -0.0002 REMARK 3 S21: 0.0001 S22: -0.0002 S23: -0.0001 REMARK 3 S31: -0.0001 S32: -0.0004 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5130 16.8669 23.5589 REMARK 3 T TENSOR REMARK 3 T11: 0.0003 T22: 0.0001 REMARK 3 T33: -0.0001 T12: -0.0002 REMARK 3 T13: 0.0001 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 332 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1498 43.8717 29.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 478 REMARK 3 RESIDUE RANGE : B 334 B 518 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9821 15.8961 14.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0117 REMARK 3 T33: -0.0002 T12: -0.0001 REMARK 3 T13: 0.0000 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.0000 REMARK 3 L33: 0.0013 L12: -0.0002 REMARK 3 L13: -0.0011 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0006 S13: 0.0005 REMARK 3 S21: 0.0001 S22: -0.0006 S23: 0.0001 REMARK 3 S31: 0.0002 S32: -0.0001 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 333 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2638 21.9401 25.3108 REMARK 3 T TENSOR REMARK 3 T11: -0.0005 T22: -0.0002 REMARK 3 T33: -0.0002 T12: 0.0001 REMARK 3 T13: 0.0001 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2304 L22: 0.7525 REMARK 3 L33: 0.5042 L12: 0.4163 REMARK 3 L13: -0.3408 L23: -0.6159 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0111 S13: -0.0008 REMARK 3 S21: 0.0359 S22: -0.0278 S23: -0.0342 REMARK 3 S31: -0.0026 S32: -0.0447 S33: 0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9770 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35400 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DSS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% (W/V) PEG3350, 0.2 M CA(OAC)2, 0.1 REMARK 280 M HEPES, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.36600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.32600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.66600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.32600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.36600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.66600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 GLN A 200 REMARK 465 GLY A 201 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 33 REMARK 465 LYS B 34 REMARK 465 ASP B 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 PHE A 175 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 45 OG SER A 47 2.12 REMARK 500 O SER A 176 O HOH A 331 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 232 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 37.52 -95.68 REMARK 500 ASN A 174 -179.43 -174.12 REMARK 500 PHE A 175 -145.11 -83.92 REMARK 500 ASP A 285 87.48 -173.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 238 OD2 REMARK 620 2 ASP B 238 OD1 52.6 REMARK 620 3 CYS B 240 SG 102.4 85.0 REMARK 620 4 HIS B 290 NE2 125.3 93.7 117.7 REMARK 620 5 PZ3 B 333 NBG 89.2 137.1 126.6 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 332 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 O REMARK 620 2 MET B 66 O 88.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PZ3 B 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PZ1 RELATED DB: PDB REMARK 900 RELATED ID: 3PZ2 RELATED DB: PDB REMARK 900 RELATED ID: 3PZ4 RELATED DB: PDB DBREF 3PZ3 A 1 237 UNP Q08602 PGTA_RAT 1 237 DBREF 3PZ3 A 242 330 UNP Q08602 PGTA_RAT 353 441 DBREF 3PZ3 B 2 331 UNP Q08603 PGTB2_RAT 2 331 SEQADV 3PZ3 GLY A -1 UNP Q08602 EXPRESSION TAG SEQADV 3PZ3 HIS A 0 UNP Q08602 EXPRESSION TAG SEQADV 3PZ3 ALA A 238 UNP Q08602 LINKER SEQADV 3PZ3 GLY A 239 UNP Q08602 LINKER SEQADV 3PZ3 SER A 240 UNP Q08602 LINKER SEQADV 3PZ3 GLY A 241 UNP Q08602 LINKER SEQRES 1 A 332 GLY HIS MET HIS GLY ARG LEU LYS VAL LYS THR SER GLU SEQRES 2 A 332 GLU GLN ALA GLU ALA LYS ARG LEU GLU ARG GLU GLN LYS SEQRES 3 A 332 LEU LYS LEU TYR GLN SER ALA THR GLN ALA VAL PHE GLN SEQRES 4 A 332 LYS ARG GLN ALA GLY GLU LEU ASP GLU SER VAL LEU GLU SEQRES 5 A 332 LEU THR SER GLN ILE LEU GLY ALA ASN PRO ASP PHE ALA SEQRES 6 A 332 THR LEU TRP ASN CYS ARG ARG GLU VAL LEU GLN HIS LEU SEQRES 7 A 332 GLU THR GLU LYS SER PRO GLU GLU SER ALA ALA LEU VAL SEQRES 8 A 332 LYS ALA GLU LEU GLY PHE LEU GLU SER CYS LEU ARG VAL SEQRES 9 A 332 ASN PRO LYS SER TYR GLY THR TRP HIS HIS ARG CYS TRP SEQRES 10 A 332 LEU LEU SER ARG LEU PRO GLU PRO ASN TRP ALA ARG GLU SEQRES 11 A 332 LEU GLU LEU CYS ALA ARG PHE LEU GLU ALA ASP GLU ARG SEQRES 12 A 332 ASN PHE HIS CYS TRP ASP TYR ARG ARG PHE VAL ALA ALA SEQRES 13 A 332 GLN ALA ALA VAL ALA PRO ALA GLU GLU LEU ALA PHE THR SEQRES 14 A 332 ASP SER LEU ILE THR ARG ASN PHE SER ASN TYR SER SER SEQRES 15 A 332 TRP HIS TYR ARG SER CYS LEU LEU PRO GLN LEU HIS PRO SEQRES 16 A 332 GLN PRO ASP SER GLY PRO GLN GLY ARG LEU PRO GLU ASN SEQRES 17 A 332 VAL LEU LEU LYS GLU LEU GLU LEU VAL GLN ASN ALA PHE SEQRES 18 A 332 PHE THR ASP PRO ASN ASP GLN SER ALA TRP PHE TYR HIS SEQRES 19 A 332 ARG TRP LEU LEU GLY ALA GLY SER GLY ARG CYS GLU LEU SEQRES 20 A 332 SER VAL GLU LYS SER THR VAL LEU GLN SER GLU LEU GLU SEQRES 21 A 332 SER CYS LYS GLU LEU GLN GLU LEU GLU PRO GLU ASN LYS SEQRES 22 A 332 TRP CYS LEU LEU THR ILE ILE LEU LEU MET ARG ALA LEU SEQRES 23 A 332 ASP PRO LEU LEU TYR GLU LYS GLU THR LEU GLN TYR PHE SEQRES 24 A 332 SER THR LEU LYS ALA VAL ASP PRO MET ARG ALA ALA TYR SEQRES 25 A 332 LEU ASP ASP LEU ARG SER LYS PHE LEU LEU GLU ASN SER SEQRES 26 A 332 VAL LEU LYS MET GLU TYR ALA SEQRES 1 B 330 GLY THR GLN GLN LYS ASP VAL THR ILE LYS SER ASP ALA SEQRES 2 B 330 PRO ASP THR LEU LEU LEU GLU LYS HIS ALA ASP TYR ILE SEQRES 3 B 330 ALA SER TYR GLY SER LYS LYS ASP ASP TYR GLU TYR CYS SEQRES 4 B 330 MET SER GLU TYR LEU ARG MET SER GLY VAL TYR TRP GLY SEQRES 5 B 330 LEU THR VAL MET ASP LEU MET GLY GLN LEU HIS ARG MET SEQRES 6 B 330 ASN LYS GLU GLU ILE LEU VAL PHE ILE LYS SER CYS GLN SEQRES 7 B 330 HIS GLU CYS GLY GLY VAL SER ALA SER ILE GLY HIS ASP SEQRES 8 B 330 PRO HIS LEU LEU TYR THR LEU SER ALA VAL GLN ILE LEU SEQRES 9 B 330 THR LEU TYR ASP SER ILE HIS VAL ILE ASN VAL ASP LYS SEQRES 10 B 330 VAL VAL ALA TYR VAL GLN SER LEU GLN LYS GLU ASP GLY SEQRES 11 B 330 SER PHE ALA GLY ASP ILE TRP GLY GLU ILE ASP THR ARG SEQRES 12 B 330 PHE SER PHE CYS ALA VAL ALA THR LEU ALA LEU LEU GLY SEQRES 13 B 330 LYS LEU ASP ALA ILE ASN VAL GLU LYS ALA ILE GLU PHE SEQRES 14 B 330 VAL LEU SER CYS MET ASN PHE ASP GLY GLY PHE GLY CYS SEQRES 15 B 330 ARG PRO GLY SER GLU SER HIS ALA GLY GLN ILE TYR CYS SEQRES 16 B 330 CYS THR GLY PHE LEU ALA ILE THR SER GLN LEU HIS GLN SEQRES 17 B 330 VAL ASN SER ASP LEU LEU GLY TRP TRP LEU CYS GLU ARG SEQRES 18 B 330 GLN LEU PRO SER GLY GLY LEU ASN GLY ARG PRO GLU LYS SEQRES 19 B 330 LEU PRO ASP VAL CYS TYR SER TRP TRP VAL LEU ALA SER SEQRES 20 B 330 LEU LYS ILE ILE GLY ARG LEU HIS TRP ILE ASP ARG GLU SEQRES 21 B 330 LYS LEU ARG SER PHE ILE LEU ALA CYS GLN ASP GLU GLU SEQRES 22 B 330 THR GLY GLY PHE ALA ASP ARG PRO GLY ASP MET VAL ASP SEQRES 23 B 330 PRO PHE HIS THR LEU PHE GLY ILE ALA GLY LEU SER LEU SEQRES 24 B 330 LEU GLY GLU GLU GLN ILE LYS PRO VAL SER PRO VAL PHE SEQRES 25 B 330 CYS MET PRO GLU GLU VAL LEU GLN ARG VAL ASN VAL GLN SEQRES 26 B 330 PRO GLU LEU VAL SER HET ZN B 1 1 HET CA B 332 1 HET PZ3 B 333 54 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM PZ3 4-({(3R)-7-(5-FORMYLFURAN-2-YL)-4-[(4-METHOXYPHENYL) HETNAM 2 PZ3 SULFONYL]-1-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-2,3,4, HETNAM 3 PZ3 5-TETRAHYDRO-1H-1,4-BENZODIAZEPIN-3-YL}METHYL)PHENYL HETNAM 4 PZ3 BENZYLCARBAMATE FORMUL 3 ZN ZN 2+ FORMUL 4 CA CA 2+ FORMUL 5 PZ3 C41 H39 N5 O7 S FORMUL 6 HOH *333(H2 O) HELIX 1 1 LEU A 19 ALA A 41 1 23 HELIX 2 2 ASP A 45 GLY A 57 1 13 HELIX 3 3 PHE A 62 GLU A 77 1 16 HELIX 4 4 SER A 81 ASN A 103 1 23 HELIX 5 5 SER A 106 ARG A 119 1 14 HELIX 6 6 ASN A 124 ASP A 139 1 16 HELIX 7 7 ASN A 142 ALA A 156 1 15 HELIX 8 8 ALA A 159 ASN A 174 1 16 HELIX 9 9 ASN A 177 HIS A 192 1 16 HELIX 10 10 PRO A 204 ASP A 222 1 19 HELIX 11 11 ASP A 225 ALA A 238 1 14 HELIX 12 12 GLY A 241 LEU A 245 5 5 HELIX 13 13 SER A 246 GLU A 267 1 22 HELIX 14 14 ASN A 270 ASP A 285 1 16 HELIX 15 15 TYR A 289 ASP A 304 1 16 HELIX 16 16 ARG A 307 GLU A 328 1 22 HELIX 17 17 LEU B 19 SER B 29 1 11 HELIX 18 18 ASP B 36 SER B 42 1 7 HELIX 19 19 LEU B 45 MET B 60 1 16 HELIX 20 20 GLN B 62 MET B 66 5 5 HELIX 21 21 ASN B 67 GLN B 79 1 13 HELIX 22 22 HIS B 94 TYR B 108 1 15 HELIX 23 23 SER B 110 ILE B 114 5 5 HELIX 24 24 ASN B 115 LEU B 126 1 12 HELIX 25 25 ASP B 142 GLY B 157 1 16 HELIX 26 26 LYS B 158 ILE B 162 5 5 HELIX 27 27 ASN B 163 SER B 173 1 11 HELIX 28 28 HIS B 190 THR B 204 1 15 HELIX 29 29 GLN B 206 VAL B 210 5 5 HELIX 30 30 ASN B 211 GLU B 221 1 11 HELIX 31 31 ASP B 238 ILE B 252 1 15 HELIX 32 32 ARG B 254 ILE B 258 5 5 HELIX 33 33 ASP B 259 CYS B 270 1 12 HELIX 34 34 ASP B 287 LEU B 301 1 15 HELIX 35 35 PRO B 316 ASN B 324 1 9 LINK ZN ZN B 1 OD2 ASP B 238 1555 1555 2.30 LINK ZN ZN B 1 OD1 ASP B 238 1555 1555 2.61 LINK ZN ZN B 1 SG CYS B 240 1555 1555 2.30 LINK ZN ZN B 1 NE2 HIS B 290 1555 1555 2.36 LINK ZN ZN B 1 NBG PZ3 B 333 1555 1555 2.12 LINK O HIS B 64 CA CA B 332 1555 1555 2.33 LINK O MET B 66 CA CA B 332 1555 1555 2.21 SITE 1 AC1 4 ASP B 238 CYS B 240 HIS B 290 PZ3 B 333 SITE 1 AC2 3 ALA A 138 HIS B 64 MET B 66 SITE 1 AC3 18 ASP A 61 ZN B 1 TYR B 30 TYR B 44 SITE 2 AC3 18 GLY B 49 TYR B 51 TRP B 52 LEU B 96 SITE 3 AC3 18 LEU B 99 GLN B 103 PHE B 147 ASP B 238 SITE 4 AC3 18 TRP B 244 PRO B 288 PHE B 289 HIS B 290 SITE 5 AC3 18 CYS B 314 HOH B 397 CRYST1 66.732 91.332 114.652 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008722 0.00000