HEADER HYDROLASE 14-DEC-10 3PZG TITLE I222 CRYSTAL FORM OF THE HYPERTHERMOSTABLE ENDO-1,4-BETA-D-MANNANASE TITLE 2 FROM THERMOTOGA PETROPHILA RKU-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE. GLYCOSYL HYDROLASE FAMILY COMPND 3 5; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 32-393; COMPND 6 EC: 3.2.1.78; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA PETROPHILA; SOURCE 3 ORGANISM_TAXID: 390874; SOURCE 4 STRAIN: RKU-1; SOURCE 5 GENE: TPET_1542; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA BARREL, GLYCOSYL HYDROLASE, SUGAR BINDING, SECRETED, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SANTOS,A.N.MEZA,J.H.PAIVA,J.C.SILVA,R.RULLER,R.A.PRADE, AUTHOR 2 F.M.SQUINA,M.T.MURAKAMI REVDAT 2 21-FEB-24 3PZG 1 REMARK SEQADV REVDAT 1 28-DEC-11 3PZG 0 JRNL AUTH C.R.SANTOS,A.N.MEZA,J.H.PAIVA,J.C.SILVA,R.RULLER,R.A.PRADE, JRNL AUTH 2 F.M.SQUINA,M.T.MURAKAMI JRNL TITL STRUCTURAL CHARACTERIZATION OF A NOVEL HYPERTHERMOSTABLE JRNL TITL 2 ENDO-1,4-BETA-D-MANNANASE FROM THERMOTOGA PETROPHILA RKU-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 71639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4227 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.4690 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.711 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3057 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4144 ; 2.301 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.991 ;23.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;12.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2404 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1773 ; 2.850 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2851 ; 3.752 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 4.915 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1293 ; 6.707 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3057 ; 3.158 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 319 ;13.946 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2969 ; 9.884 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 37.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% ETHANOL, 5% PEG1000, 10% GLYCEROL, REMARK 280 PH 4.2, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.51350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.98250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.94750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.51350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.98250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.94750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.51350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.98250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.94750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.51350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.98250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.94750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 465 LEU A 32 REMARK 465 ASN A 33 REMARK 465 GLY A 34 REMARK 465 LYS A 35 REMARK 465 GLU A 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 104 O HOH A 583 2.03 REMARK 500 O HOH A 596 O HOH A 675 2.09 REMARK 500 O HOH A 574 O HOH A 675 2.09 REMARK 500 NH2 ARG A 361 O HOH A 656 2.15 REMARK 500 O SER A 239 O HOH A 423 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 423 O HOH A 583 8555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 79 CD GLU A 79 OE2 0.082 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.085 REMARK 500 TYR A 165 CZ TYR A 165 CE2 0.109 REMARK 500 TYR A 255 CZ TYR A 255 CE2 0.091 REMARK 500 GLU A 289 CG GLU A 289 CD 0.103 REMARK 500 GLU A 289 CD GLU A 289 OE1 0.107 REMARK 500 GLU A 308 CG GLU A 308 CD 0.099 REMARK 500 GLU A 317 CD GLU A 317 OE1 0.067 REMARK 500 TYR A 332 CZ TYR A 332 CE2 0.085 REMARK 500 TRP A 335 CG TRP A 335 CD1 0.109 REMARK 500 TYR A 340 CE1 TYR A 340 CZ 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 GLU A 194 OE1 - CD - OE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU A 317 OE1 - CD - OE2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 345 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 345 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 49 -12.56 -147.62 REMARK 500 MET A 89 -50.71 -127.09 REMARK 500 ASN A 240 62.25 62.86 REMARK 500 ASP A 360 64.81 -100.69 REMARK 500 ASP A 378 -157.96 -126.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 395 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PZ9 RELATED DB: PDB REMARK 900 NATIVE STRUCTUE REMARK 900 RELATED ID: 3PZI RELATED DB: PDB REMARK 900 WITH BETA-D-GLUCOSE REMARK 900 RELATED ID: 3PZM RELATED DB: PDB REMARK 900 WITH GLYCEROL REMARK 900 RELATED ID: 3PZN RELATED DB: PDB REMARK 900 WITH CITRATE REMARK 900 RELATED ID: 3PZO RELATED DB: PDB REMARK 900 WITH MALTOSE REMARK 900 RELATED ID: 3PZQ RELATED DB: PDB REMARK 900 WITH MALTOSE DBREF 3PZG A 32 393 UNP A5IMX7 A5IMX7_THEP1 32 393 SEQADV 3PZG MET A 11 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG GLY A 12 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG SER A 13 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG SER A 14 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 15 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 16 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 17 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 18 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 19 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 20 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG SER A 21 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG SER A 22 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG GLY A 23 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG LEU A 24 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG VAL A 25 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG PRO A 26 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG ARG A 27 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG GLY A 28 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG SER A 29 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG HIS A 30 UNP A5IMX7 EXPRESSION TAG SEQADV 3PZG MET A 31 UNP A5IMX7 EXPRESSION TAG SEQRES 1 A 383 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 383 LEU VAL PRO ARG GLY SER HIS MET LEU ASN GLY LYS GLU SEQRES 3 A 383 PHE ARG PHE ILE GLY SER ASN ASN TYR TYR MET HIS TYR SEQRES 4 A 383 LYS SER ASN ARG MET ILE ASP SER VAL LEU GLU SER ALA SEQRES 5 A 383 ARG ASP MET GLY ILE LYS VAL LEU ARG ILE TRP GLY PHE SEQRES 6 A 383 LEU ASP GLY GLU SER TYR CYS ARG ASP LYS ASN THR TYR SEQRES 7 A 383 MET HIS PRO GLU PRO GLY VAL PHE GLY VAL PRO GLU GLY SEQRES 8 A 383 ILE SER ASN ALA GLN ASN GLY PHE GLU ARG LEU ASP TYR SEQRES 9 A 383 THR ILE ALA LYS ALA LYS GLU LEU GLY ILE LYS LEU ILE SEQRES 10 A 383 ILE VAL LEU VAL ASN ASN TRP ASP ASP PHE GLY GLY MET SEQRES 11 A 383 ASN GLN TYR VAL ARG TRP PHE GLY GLY THR HIS HIS ASP SEQRES 12 A 383 ASP PHE TYR ARG ASP GLU ARG ILE LYS GLU GLU TYR LYS SEQRES 13 A 383 LYS TYR VAL SER PHE LEU ILE ASN HIS VAL ASN VAL TYR SEQRES 14 A 383 THR GLY VAL PRO TYR ARG GLU GLU PRO THR ILE MET ALA SEQRES 15 A 383 TRP GLU LEU ALA ASN GLU LEU ARG CYS GLU THR ASP LYS SEQRES 16 A 383 SER GLY ASN THR LEU VAL GLU TRP VAL LYS GLU MET SER SEQRES 17 A 383 SER TYR ILE LYS SER LEU ASP PRO ASN HIS LEU VAL ALA SEQRES 18 A 383 VAL GLY ASP GLU GLY PHE PHE SER ASN TYR GLU GLY PHE SEQRES 19 A 383 LYS PRO TYR GLY GLY GLU ALA GLU TRP ALA TYR ASN GLY SEQRES 20 A 383 TRP SER GLY VAL ASP TRP LYS LYS LEU LEU SER ILE GLU SEQRES 21 A 383 THR VAL ASP PHE GLY THR PHE HIS LEU TYR PRO SER HIS SEQRES 22 A 383 TRP GLY VAL SER PRO GLU ASN TYR ALA GLN TRP GLY ALA SEQRES 23 A 383 LYS TRP ILE GLU ASP HIS ILE LYS ILE ALA LYS GLU ILE SEQRES 24 A 383 GLY LYS PRO VAL VAL LEU GLU GLU TYR GLY ILE PRO LYS SEQRES 25 A 383 SER ALA PRO VAL ASN ARG THR ALA ILE TYR ARG LEU TRP SEQRES 26 A 383 ASN ASP LEU VAL TYR ASP LEU GLY GLY ASP GLY ALA MET SEQRES 27 A 383 PHE TRP MET LEU ALA GLY ILE GLY GLU GLY SER ASP ARG SEQRES 28 A 383 ASP GLU ARG GLY TYR TYR PRO ASP TYR ASP GLY PHE ARG SEQRES 29 A 383 ILE VAL ASN ASP ASP SER PRO GLU ALA GLU LEU ILE ARG SEQRES 30 A 383 GLU TYR ALA LYS LEU PHE HET TRS A 1 8 HET GOL A 394 6 HET PO4 A 395 5 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *319(H2 O) HELIX 1 1 SER A 51 GLY A 66 1 16 HELIX 2 2 GLY A 78 ASN A 86 1 9 HELIX 3 3 GLY A 108 GLY A 123 1 16 HELIX 4 4 GLY A 138 PHE A 147 1 10 HELIX 5 5 ASP A 153 ASP A 158 1 6 HELIX 6 6 ASP A 158 ASN A 174 1 17 HELIX 7 7 PRO A 183 GLU A 187 5 5 HELIX 8 8 GLY A 207 ASP A 225 1 19 HELIX 9 9 PRO A 246 GLU A 250 5 5 HELIX 10 10 ALA A 251 TYR A 255 5 5 HELIX 11 11 ASP A 262 SER A 268 1 7 HELIX 12 12 TYR A 280 TRP A 284 5 5 HELIX 13 13 SER A 287 GLU A 289 5 3 HELIX 14 14 ASN A 290 GLY A 310 1 21 HELIX 15 15 ASN A 327 LEU A 342 1 16 HELIX 16 16 SER A 380 LYS A 391 1 12 SHEET 1 A 8 LEU A 229 ALA A 231 0 SHEET 2 A 8 ILE A 190 GLU A 194 1 N TRP A 193 O LEU A 229 SHEET 3 A 8 LYS A 125 VAL A 129 1 N LEU A 126 O MET A 191 SHEET 4 A 8 VAL A 69 TRP A 73 1 N ILE A 72 O ILE A 127 SHEET 5 A 8 PHE A 39 ASN A 43 1 N SER A 42 O ARG A 71 SHEET 6 A 8 GLY A 346 PHE A 349 1 O ALA A 347 N GLY A 41 SHEET 7 A 8 VAL A 313 TYR A 318 1 N LEU A 315 O MET A 348 SHEET 8 A 8 GLY A 275 LEU A 279 1 N GLY A 275 O VAL A 314 SHEET 1 B 2 THR A 87 TYR A 88 0 SHEET 2 B 2 GLN A 106 ASN A 107 1 O GLN A 106 N TYR A 88 CISPEP 1 TRP A 350 MET A 351 0 3.43 SITE 1 AC1 9 ASN A 197 GLU A 198 TYR A 280 GLU A 317 SITE 2 AC1 9 TRP A 350 GOL A 394 HOH A 510 HOH A 530 SITE 3 AC1 9 HOH A 566 SITE 1 AC2 7 TRS A 1 HOH A 8 GLU A 198 ARG A 200 SITE 2 AC2 7 HIS A 283 TRP A 284 HOH A 618 SITE 1 AC3 10 LYS A 322 ARG A 364 ARG A 374 ASP A 378 SITE 2 AC3 10 SER A 380 HOH A 405 HOH A 515 HOH A 528 SITE 3 AC3 10 HOH A 582 HOH A 598 CRYST1 91.027 89.965 97.895 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010215 0.00000