HEADER TRANSFERASE 14-DEC-10 3PZS TITLE CRYSTAL STRUCTURE OF A PYRIDOXAMINE KINASE FROM YERSINIA PESTIS CO92 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PM KINASE; COMPND 5 EC: 2.7.1.35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: PDXY, Y1967, YPO2368, YP_2154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PYRIDOXAMINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.BRUNZELLE,Z.WAWRZAK,M.KUDRITSKA,O.ONOPRIYENKO,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 1 16-MAR-11 3PZS 0 JRNL AUTH J.S.BRUNZELLE,Z.WAWRZAK,M.KUDRITSKA,O.ONOPRIYENKO, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF A PYRIDOXAMINE KINASE FROM YERSINIA JRNL TITL 2 PESTIS CO92 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 49553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2510 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3199 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2310 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3021 REMARK 3 BIN R VALUE (WORKING SET) : 0.2285 REMARK 3 BIN FREE R VALUE : 0.2737 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.56 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4346 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34460 REMARK 3 B22 (A**2) : 3.26280 REMARK 3 B33 (A**2) : -6.60730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4561 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 6213 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 2079 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 115 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 669 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 4561 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 586 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5761 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PZS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB063014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SINGLE DIAMOND 111 REMARK 200 OPTICS : BE LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M NACL, REMARK 280 HEPES PH 7.5, 2% EG, 2% BME , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.95700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.45850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.05050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.45850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.95700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.05050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 116 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLN B 280 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 122 -0.21 -142.23 REMARK 500 SER A 184 -131.48 58.25 REMARK 500 SER B 184 -132.11 60.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH B 510 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 5.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 287 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 194 OE2 REMARK 620 2 HIS A 189 O 80.5 REMARK 620 3 CYS A 192 O 102.0 90.0 REMARK 620 4 HOH A 378 O 95.3 172.3 97.3 REMARK 620 5 HOH A 388 O 98.7 87.6 158.4 86.7 REMARK 620 6 HOH A 351 O 174.8 94.2 78.3 89.8 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 287 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 189 O REMARK 620 2 CYS B 192 O 91.7 REMARK 620 3 GLU B 194 OE2 82.6 106.3 REMARK 620 4 HOH B 332 O 167.1 100.9 96.2 REMARK 620 5 HOH B 369 O 85.6 73.5 168.3 95.3 REMARK 620 6 HOH B 425 O 83.0 151.7 100.5 84.6 78.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 290 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP04384 RELATED DB: TARGETDB DBREF 3PZS A 1 286 UNP Q7CIR8 PDXY_YERPE 1 286 DBREF 3PZS B 1 286 UNP Q7CIR8 PDXY_YERPE 1 286 SEQADV 3PZS SER A -2 UNP Q7CIR8 EXPRESSION TAG SEQADV 3PZS ASN A -1 UNP Q7CIR8 EXPRESSION TAG SEQADV 3PZS ALA A 0 UNP Q7CIR8 EXPRESSION TAG SEQADV 3PZS SER B -2 UNP Q7CIR8 EXPRESSION TAG SEQADV 3PZS ASN B -1 UNP Q7CIR8 EXPRESSION TAG SEQADV 3PZS ALA B 0 UNP Q7CIR8 EXPRESSION TAG SEQRES 1 A 289 SER ASN ALA MSE LYS ASN ILE LEU SER ILE GLN SER HIS SEQRES 2 A 289 VAL VAL PHE GLY HIS ALA GLY ASN SER ALA ALA GLU PHE SEQRES 3 A 289 PRO MSE ARG ARG MSE GLY VAL ASN VAL TRP PRO LEU ASN SEQRES 4 A 289 THR VAL GLN PHE SER ASN HIS THR GLN TYR GLY HIS TRP SEQRES 5 A 289 THR GLY CYS VAL MSE PRO ALA SER HIS LEU THR ASP ILE SEQRES 6 A 289 VAL GLN GLY ILE ALA ASP ILE ASP ARG LEU LYS ASP CYS SEQRES 7 A 289 ASP ALA VAL LEU SER GLY TYR ILE GLY SER PRO GLU GLN SEQRES 8 A 289 GLY SER HIS ILE LEU ALA ALA VAL ALA GLN VAL LYS GLN SEQRES 9 A 289 ALA ASN PRO ASP ALA TRP TYR PHE CYS ASP PRO VAL MSE SEQRES 10 A 289 GLY HIS PRO GLU LYS GLY CYS ILE VAL ALA PRO GLY VAL SEQRES 11 A 289 ALA GLU PHE PHE CYS ASN GLU ALA LEU PRO ALA SER ASP SEQRES 12 A 289 MSE ILE ALA PRO ASN LEU LEU GLU LEU GLU GLN LEU SER SEQRES 13 A 289 GLY GLU ARG VAL GLU ASN VAL GLU GLN ALA VAL GLN VAL SEQRES 14 A 289 ALA ARG SER LEU CYS ALA ARG GLY PRO LYS VAL VAL LEU SEQRES 15 A 289 VAL LYS HIS LEU SER ARG ALA GLY TYR HIS ALA ASP CYS SEQRES 16 A 289 PHE GLU MSE LEU LEU VAL THR ALA ASP ASP ALA TRP HIS SEQRES 17 A 289 ILE CYS ARG PRO LEU VAL ASP PHE GLY LYS ARG GLN PRO SEQRES 18 A 289 VAL GLY VAL GLY ASP LEU THR SER GLY LEU LEU LEU VAL SEQRES 19 A 289 ASN LEU LEU LYS GLY GLU PRO LEU ASP LYS ALA LEU GLU SEQRES 20 A 289 HIS VAL THR ALA ALA VAL TYR GLU VAL MSE LEU LYS THR SEQRES 21 A 289 GLN GLU MSE GLY GLU TYR GLU LEU GLN VAL VAL ALA ALA SEQRES 22 A 289 GLN GLU THR ILE VAL THR PRO ILE CYS GLN PHE THR ALA SEQRES 23 A 289 VAL ARG LEU SEQRES 1 B 289 SER ASN ALA MSE LYS ASN ILE LEU SER ILE GLN SER HIS SEQRES 2 B 289 VAL VAL PHE GLY HIS ALA GLY ASN SER ALA ALA GLU PHE SEQRES 3 B 289 PRO MSE ARG ARG MSE GLY VAL ASN VAL TRP PRO LEU ASN SEQRES 4 B 289 THR VAL GLN PHE SER ASN HIS THR GLN TYR GLY HIS TRP SEQRES 5 B 289 THR GLY CYS VAL MSE PRO ALA SER HIS LEU THR ASP ILE SEQRES 6 B 289 VAL GLN GLY ILE ALA ASP ILE ASP ARG LEU LYS ASP CYS SEQRES 7 B 289 ASP ALA VAL LEU SER GLY TYR ILE GLY SER PRO GLU GLN SEQRES 8 B 289 GLY SER HIS ILE LEU ALA ALA VAL ALA GLN VAL LYS GLN SEQRES 9 B 289 ALA ASN PRO ASP ALA TRP TYR PHE CYS ASP PRO VAL MSE SEQRES 10 B 289 GLY HIS PRO GLU LYS GLY CYS ILE VAL ALA PRO GLY VAL SEQRES 11 B 289 ALA GLU PHE PHE CYS ASN GLU ALA LEU PRO ALA SER ASP SEQRES 12 B 289 MSE ILE ALA PRO ASN LEU LEU GLU LEU GLU GLN LEU SER SEQRES 13 B 289 GLY GLU ARG VAL GLU ASN VAL GLU GLN ALA VAL GLN VAL SEQRES 14 B 289 ALA ARG SER LEU CYS ALA ARG GLY PRO LYS VAL VAL LEU SEQRES 15 B 289 VAL LYS HIS LEU SER ARG ALA GLY TYR HIS ALA ASP CYS SEQRES 16 B 289 PHE GLU MSE LEU LEU VAL THR ALA ASP ASP ALA TRP HIS SEQRES 17 B 289 ILE CYS ARG PRO LEU VAL ASP PHE GLY LYS ARG GLN PRO SEQRES 18 B 289 VAL GLY VAL GLY ASP LEU THR SER GLY LEU LEU LEU VAL SEQRES 19 B 289 ASN LEU LEU LYS GLY GLU PRO LEU ASP LYS ALA LEU GLU SEQRES 20 B 289 HIS VAL THR ALA ALA VAL TYR GLU VAL MSE LEU LYS THR SEQRES 21 B 289 GLN GLU MSE GLY GLU TYR GLU LEU GLN VAL VAL ALA ALA SEQRES 22 B 289 GLN GLU THR ILE VAL THR PRO ILE CYS GLN PHE THR ALA SEQRES 23 B 289 VAL ARG LEU MODRES 3PZS MSE A 25 MET SELENOMETHIONINE MODRES 3PZS MSE A 28 MET SELENOMETHIONINE MODRES 3PZS MSE A 54 MET SELENOMETHIONINE MODRES 3PZS MSE A 114 MET SELENOMETHIONINE MODRES 3PZS MSE A 141 MET SELENOMETHIONINE MODRES 3PZS MSE A 195 MET SELENOMETHIONINE MODRES 3PZS MSE A 254 MET SELENOMETHIONINE MODRES 3PZS MSE A 260 MET SELENOMETHIONINE MODRES 3PZS MSE B 1 MET SELENOMETHIONINE MODRES 3PZS MSE B 25 MET SELENOMETHIONINE MODRES 3PZS MSE B 28 MET SELENOMETHIONINE MODRES 3PZS MSE B 54 MET SELENOMETHIONINE MODRES 3PZS MSE B 114 MET SELENOMETHIONINE MODRES 3PZS MSE B 141 MET SELENOMETHIONINE MODRES 3PZS MSE B 195 MET SELENOMETHIONINE MODRES 3PZS MSE B 254 MET SELENOMETHIONINE MODRES 3PZS MSE B 260 MET SELENOMETHIONINE HET MSE A 25 8 HET MSE A 28 16 HET MSE A 54 8 HET MSE A 114 8 HET MSE A 141 8 HET MSE A 195 8 HET MSE A 254 8 HET MSE A 260 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 28 16 HET MSE B 54 16 HET MSE B 114 8 HET MSE B 141 8 HET MSE B 195 8 HET MSE B 254 8 HET MSE B 260 8 HET NA A 287 1 HET SO4 A 288 5 HET BME A 289 4 HET BME A 290 4 HET BME A 291 4 HET BME A 292 4 HET NA B 287 1 HET SO4 B 288 5 HET BME B 289 4 HET BME B 290 4 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 BME 6(C2 H6 O S) FORMUL 13 HOH *560(H2 O) HELIX 1 1 GLY A 17 MSE A 28 1 12 HELIX 2 2 HIS A 43 GLY A 47 5 5 HELIX 3 3 PRO A 55 ILE A 69 1 15 HELIX 4 4 ARG A 71 CYS A 75 5 5 HELIX 5 5 SER A 85 ASN A 103 1 19 HELIX 6 6 ALA A 124 GLU A 134 1 11 HELIX 7 7 GLU A 134 SER A 139 1 6 HELIX 8 8 ASN A 145 GLY A 154 1 10 HELIX 9 9 ASN A 159 ALA A 172 1 14 HELIX 10 10 LEU A 183 GLY A 187 5 5 HELIX 11 11 GLY A 220 LYS A 235 1 16 HELIX 12 12 PRO A 238 MSE A 260 1 23 HELIX 13 13 ALA A 270 THR A 276 1 7 HELIX 14 14 GLY B 17 MSE B 28 1 12 HELIX 15 15 HIS B 43 GLY B 47 5 5 HELIX 16 16 PRO B 55 ILE B 69 1 15 HELIX 17 17 ARG B 71 CYS B 75 5 5 HELIX 18 18 SER B 85 ASN B 103 1 19 HELIX 19 19 GLY B 126 GLU B 134 1 9 HELIX 20 20 GLU B 134 SER B 139 1 6 HELIX 21 21 ASN B 145 GLY B 154 1 10 HELIX 22 22 ASN B 159 ARG B 173 1 15 HELIX 23 23 LEU B 183 GLY B 187 5 5 HELIX 24 24 GLY B 220 LYS B 235 1 16 HELIX 25 25 PRO B 238 GLY B 261 1 24 HELIX 26 26 ALA B 270 THR B 276 1 7 SHEET 1 A10 GLY A 51 VAL A 53 0 SHEET 2 A10 ASN A 31 PHE A 40 -1 N GLN A 39 O CYS A 52 SHEET 3 A10 ASN A 3 VAL A 11 1 N ILE A 4 O TRP A 33 SHEET 4 A10 ALA A 77 SER A 80 1 O ALA A 77 N LEU A 5 SHEET 5 A10 TRP A 107 CYS A 110 1 O PHE A 109 N VAL A 78 SHEET 6 A10 MSE A 141 ILE A 142 1 O MSE A 141 N CYS A 110 SHEET 7 A10 VAL A 177 VAL A 180 1 O LEU A 179 N ILE A 142 SHEET 8 A10 CYS A 192 VAL A 198 -1 O VAL A 198 N VAL A 178 SHEET 9 A10 ALA A 203 PRO A 209 -1 O ARG A 208 N PHE A 193 SHEET 10 A10 VAL A 284 ARG A 285 -1 O VAL A 284 N HIS A 205 SHEET 1 B 2 GLY A 115 HIS A 116 0 SHEET 2 B 2 GLY A 120 CYS A 121 -1 O GLY A 120 N HIS A 116 SHEET 1 C10 GLY B 51 VAL B 53 0 SHEET 2 C10 ASN B 31 PHE B 40 -1 N GLN B 39 O CYS B 52 SHEET 3 C10 ASN B 3 VAL B 11 1 N ILE B 4 O TRP B 33 SHEET 4 C10 ALA B 77 SER B 80 1 O LEU B 79 N ILE B 7 SHEET 5 C10 TRP B 107 CYS B 110 1 O PHE B 109 N VAL B 78 SHEET 6 C10 MSE B 141 ILE B 142 1 O MSE B 141 N CYS B 110 SHEET 7 C10 VAL B 177 VAL B 180 1 O LEU B 179 N ILE B 142 SHEET 8 C10 CYS B 192 VAL B 198 -1 O LEU B 196 N VAL B 180 SHEET 9 C10 ALA B 203 PRO B 209 -1 O ARG B 208 N PHE B 193 SHEET 10 C10 VAL B 284 ARG B 285 -1 O VAL B 284 N HIS B 205 SHEET 1 D 2 GLY B 115 HIS B 116 0 SHEET 2 D 2 GLY B 120 CYS B 121 -1 O GLY B 120 N HIS B 116 LINK C PRO A 24 N MSE A 25 1555 1555 1.35 LINK C MSE A 25 N ARG A 26 1555 1555 1.35 LINK C ARG A 27 N AMSE A 28 1555 1555 1.34 LINK C ARG A 27 N BMSE A 28 1555 1555 1.33 LINK C AMSE A 28 N GLY A 29 1555 1555 1.34 LINK C BMSE A 28 N GLY A 29 1555 1555 1.33 LINK C VAL A 53 N MSE A 54 1555 1555 1.32 LINK C MSE A 54 N PRO A 55 1555 1555 1.35 LINK C VAL A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N GLY A 115 1555 1555 1.33 LINK C ASP A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N ILE A 142 1555 1555 1.33 LINK C GLU A 194 N MSE A 195 1555 1555 1.34 LINK C MSE A 195 N LEU A 196 1555 1555 1.32 LINK C VAL A 253 N MSE A 254 1555 1555 1.35 LINK C MSE A 254 N LEU A 255 1555 1555 1.36 LINK C GLU A 259 N MSE A 260 1555 1555 1.35 LINK C MSE A 260 N GLY A 261 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C PRO B 24 N MSE B 25 1555 1555 1.34 LINK C MSE B 25 N ARG B 26 1555 1555 1.36 LINK C ARG B 27 N AMSE B 28 1555 1555 1.34 LINK C ARG B 27 N BMSE B 28 1555 1555 1.35 LINK C AMSE B 28 N GLY B 29 1555 1555 1.33 LINK C BMSE B 28 N GLY B 29 1555 1555 1.33 LINK C VAL B 53 N AMSE B 54 1555 1555 1.34 LINK C VAL B 53 N BMSE B 54 1555 1555 1.35 LINK C AMSE B 54 N PRO B 55 1555 1555 1.36 LINK C BMSE B 54 N PRO B 55 1555 1555 1.36 LINK C VAL B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N GLY B 115 1555 1555 1.33 LINK C ASP B 140 N MSE B 141 1555 1555 1.33 LINK C MSE B 141 N ILE B 142 1555 1555 1.32 LINK C GLU B 194 N MSE B 195 1555 1555 1.35 LINK C MSE B 195 N LEU B 196 1555 1555 1.33 LINK C VAL B 253 N MSE B 254 1555 1555 1.35 LINK C MSE B 254 N LEU B 255 1555 1555 1.35 LINK C GLU B 259 N MSE B 260 1555 1555 1.35 LINK C MSE B 260 N GLY B 261 1555 1555 1.33 LINK OE2 GLU A 194 NA NA A 287 1555 1555 2.24 LINK O HIS B 189 NA NA B 287 1555 1555 2.29 LINK O HIS A 189 NA NA A 287 1555 1555 2.29 LINK O CYS B 192 NA NA B 287 1555 1555 2.37 LINK O CYS A 192 NA NA A 287 1555 1555 2.42 LINK OE2 GLU B 194 NA NA B 287 1555 1555 2.42 LINK NA NA B 287 O HOH B 332 1555 1555 2.24 LINK NA NA B 287 O HOH B 369 1555 1555 2.28 LINK NA NA A 287 O HOH A 378 1555 1555 2.34 LINK NA NA A 287 O HOH A 388 1555 1555 2.36 LINK NA NA B 287 O HOH B 425 1555 1555 2.44 LINK NA NA A 287 O HOH A 351 1555 1555 2.50 SITE 1 AC1 6 HIS A 189 CYS A 192 GLU A 194 HOH A 351 SITE 2 AC1 6 HOH A 378 HOH A 388 SITE 1 AC2 8 VAL A 219 GLY A 220 VAL A 221 GLY A 222 SITE 2 AC2 8 ASP A 223 HOH A 375 HOH A 549 HOH A 556 SITE 1 AC3 5 GLY A 14 GLU A 262 GLN A 266 HOH A 315 SITE 2 AC3 5 HOH B 418 SITE 1 AC4 7 PHE A 40 TRP A 49 CYS A 52 VAL A 53 SITE 2 AC4 7 HIS A 189 ALA A 190 ASP A 191 SITE 1 AC5 2 CYS A 171 ALA A 200 SITE 1 AC6 3 CYS A 192 ARG A 208 HOH A 525 SITE 1 AC7 6 HIS B 189 CYS B 192 GLU B 194 HOH B 332 SITE 2 AC7 6 HOH B 369 HOH B 425 SITE 1 AC8 8 VAL B 219 GLY B 220 VAL B 221 GLY B 222 SITE 2 AC8 8 ASP B 223 HOH B 341 HOH B 381 HOH B 401 SITE 1 AC9 7 HIS B 48 TRP B 49 CYS B 192 CYS B 207 SITE 2 AC9 7 ARG B 208 PRO B 209 HOH B 421 SITE 1 BC1 8 TRP A 33 HOH A 347 GLY B 14 HIS B 15 SITE 2 BC1 8 GLU B 264 GLN B 266 HOH B 313 HOH B 346 CRYST1 67.914 88.101 102.917 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009717 0.00000