data_3Q0F # _entry.id 3Q0F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3Q0F pdb_00003q0f 10.2210/pdb3q0f/pdb NDB NA0904 ? ? RCSB RCSB063037 ? ? WWPDB D_1000063037 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3Q0F _pdbx_database_status.recvd_initial_deposition_date 2010-12-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3Q0B 'Crystal structure of SUVH5 SRA-fully methylated CG DNA in space group P42212' unspecified PDB 3Q0C 'Crystal structure of SUVH5 SRA-fully methylated CG DNA in space group P6122' unspecified PDB 3Q0D 'Crystal structure of SUVH5 SRA-hemi methylated CG complex' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eerappa, R.' 1 'Simanshu, D.K.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title ;A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. ; _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 25 _citation.page_first 137 _citation.page_last 152 _citation.year 2011 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21245167 _citation.pdbx_database_id_DOI 10.1101/gad.1980311 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rajakumara, E.' 1 ? primary 'Law, J.A.' 2 ? primary 'Simanshu, D.K.' 3 ? primary 'Voigt, P.' 4 ? primary 'Johnson, L.M.' 5 ? primary 'Reinberg, D.' 6 ? primary 'Patel, D.J.' 7 ? primary 'Jacobsen, S.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5' 18515.920 2 2.1.1.43 ? 'SUVH5 SRA Domain (UNP Residues 362-528)' ? 2 polymer syn ;DNA (5'-D(*CP*TP*GP*AP*GP*GP*AP*GP*TP*AP*T)-3') ; 3413.246 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*AP*CP*TP*(5CM)P*CP*TP*CP*AP*G)-3') ; 2993.994 1 ? ? ? ? 4 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, Protein SET DOMAIN GROUP 9, Suppressor of variegation 3-9 homolog protein 5, Su(var)3-9 homolog protein 5 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; X,A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DA)(DG)(DG)(DA)(DG)(DT)(DA)(DT)' CTGAGGAGTAT B ? 3 polydeoxyribonucleotide no yes '(DT)(DA)(DC)(DT)(5CM)(DC)(DT)(DC)(DA)(DG)' TACTCCTCAG C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 ILE n 1 4 GLY n 1 5 THR n 1 6 VAL n 1 7 PRO n 1 8 GLY n 1 9 VAL n 1 10 GLU n 1 11 VAL n 1 12 GLY n 1 13 ASP n 1 14 GLU n 1 15 PHE n 1 16 GLN n 1 17 TYR n 1 18 ARG n 1 19 MET n 1 20 GLU n 1 21 LEU n 1 22 ASN n 1 23 LEU n 1 24 LEU n 1 25 GLY n 1 26 ILE n 1 27 HIS n 1 28 ARG n 1 29 PRO n 1 30 SER n 1 31 GLN n 1 32 SER n 1 33 GLY n 1 34 ILE n 1 35 ASP n 1 36 TYR n 1 37 MET n 1 38 LYS n 1 39 ASP n 1 40 ASP n 1 41 GLY n 1 42 GLY n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 ALA n 1 47 THR n 1 48 SER n 1 49 ILE n 1 50 VAL n 1 51 SER n 1 52 SER n 1 53 GLY n 1 54 GLY n 1 55 TYR n 1 56 ASN n 1 57 ASP n 1 58 VAL n 1 59 LEU n 1 60 ASP n 1 61 ASN n 1 62 SER n 1 63 ASP n 1 64 VAL n 1 65 LEU n 1 66 ILE n 1 67 TYR n 1 68 THR n 1 69 GLY n 1 70 GLN n 1 71 GLY n 1 72 GLY n 1 73 ASN n 1 74 VAL n 1 75 GLY n 1 76 LYS n 1 77 LYS n 1 78 LYS n 1 79 ASN n 1 80 ASN n 1 81 GLU n 1 82 PRO n 1 83 PRO n 1 84 LYS n 1 85 ASP n 1 86 GLN n 1 87 GLN n 1 88 LEU n 1 89 VAL n 1 90 THR n 1 91 GLY n 1 92 ASN n 1 93 LEU n 1 94 ALA n 1 95 LEU n 1 96 LYS n 1 97 ASN n 1 98 SER n 1 99 ILE n 1 100 ASN n 1 101 LYS n 1 102 LYS n 1 103 ASN n 1 104 PRO n 1 105 VAL n 1 106 ARG n 1 107 VAL n 1 108 ILE n 1 109 ARG n 1 110 GLY n 1 111 ILE n 1 112 LYS n 1 113 ASN n 1 114 THR n 1 115 THR n 1 116 LEU n 1 117 GLN n 1 118 SER n 1 119 SER n 1 120 VAL n 1 121 VAL n 1 122 ALA n 1 123 LYS n 1 124 ASN n 1 125 TYR n 1 126 VAL n 1 127 TYR n 1 128 ASP n 1 129 GLY n 1 130 LEU n 1 131 TYR n 1 132 LEU n 1 133 VAL n 1 134 GLU n 1 135 GLU n 1 136 TYR n 1 137 TRP n 1 138 GLU n 1 139 GLU n 1 140 THR n 1 141 GLY n 1 142 SER n 1 143 HIS n 1 144 GLY n 1 145 LYS n 1 146 LEU n 1 147 VAL n 1 148 PHE n 1 149 LYS n 1 150 PHE n 1 151 LYS n 1 152 LEU n 1 153 ARG n 1 154 ARG n 1 155 ILE n 1 156 PRO n 1 157 GLY n 1 158 GLN n 1 159 PRO n 1 160 GLU n 1 161 LEU n 1 162 PRO n 1 163 TRP n 1 164 LYS n 1 165 GLU n 1 166 VAL n 1 167 ALA n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DA n 2 11 DT n 3 1 DT n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 5CM n 3 6 DC n 3 7 DT n 3 8 DC n 3 9 DA n 3 10 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At2g35160, SDG9, SET9, SUVH5, T4C15.17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET SUMO' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Chemically Synthesized' 3 1 sample ? ? ? ? ? 'Chemically Synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 362 362 GLN GLN X . n A 1 2 ILE 2 363 363 ILE ILE X . n A 1 3 ILE 3 364 364 ILE ILE X . n A 1 4 GLY 4 365 365 GLY GLY X . n A 1 5 THR 5 366 366 THR THR X . n A 1 6 VAL 6 367 367 VAL VAL X . n A 1 7 PRO 7 368 368 PRO PRO X . n A 1 8 GLY 8 369 369 GLY GLY X . n A 1 9 VAL 9 370 370 VAL VAL X . n A 1 10 GLU 10 371 371 GLU GLU X . n A 1 11 VAL 11 372 372 VAL VAL X . n A 1 12 GLY 12 373 373 GLY GLY X . n A 1 13 ASP 13 374 374 ASP ASP X . n A 1 14 GLU 14 375 375 GLU GLU X . n A 1 15 PHE 15 376 376 PHE PHE X . n A 1 16 GLN 16 377 377 GLN GLN X . n A 1 17 TYR 17 378 378 TYR TYR X . n A 1 18 ARG 18 379 379 ARG ARG X . n A 1 19 MET 19 380 380 MET MET X . n A 1 20 GLU 20 381 381 GLU GLU X . n A 1 21 LEU 21 382 382 LEU LEU X . n A 1 22 ASN 22 383 383 ASN ASN X . n A 1 23 LEU 23 384 384 LEU LEU X . n A 1 24 LEU 24 385 385 LEU LEU X . n A 1 25 GLY 25 386 386 GLY GLY X . n A 1 26 ILE 26 387 387 ILE ILE X . n A 1 27 HIS 27 388 388 HIS HIS X . n A 1 28 ARG 28 389 389 ARG ARG X . n A 1 29 PRO 29 390 390 PRO PRO X . n A 1 30 SER 30 391 391 SER SER X . n A 1 31 GLN 31 392 392 GLN GLN X . n A 1 32 SER 32 393 393 SER SER X . n A 1 33 GLY 33 394 394 GLY GLY X . n A 1 34 ILE 34 395 395 ILE ILE X . n A 1 35 ASP 35 396 396 ASP ASP X . n A 1 36 TYR 36 397 397 TYR TYR X . n A 1 37 MET 37 398 398 MET MET X . n A 1 38 LYS 38 399 399 LYS LYS X . n A 1 39 ASP 39 400 400 ASP ASP X . n A 1 40 ASP 40 401 401 ASP ASP X . n A 1 41 GLY 41 402 402 GLY GLY X . n A 1 42 GLY 42 403 403 GLY GLY X . n A 1 43 GLU 43 404 404 GLU GLU X . n A 1 44 LEU 44 405 405 LEU LEU X . n A 1 45 VAL 45 406 406 VAL VAL X . n A 1 46 ALA 46 407 407 ALA ALA X . n A 1 47 THR 47 408 408 THR THR X . n A 1 48 SER 48 409 409 SER SER X . n A 1 49 ILE 49 410 410 ILE ILE X . n A 1 50 VAL 50 411 411 VAL VAL X . n A 1 51 SER 51 412 412 SER SER X . n A 1 52 SER 52 413 413 SER SER X . n A 1 53 GLY 53 414 414 GLY GLY X . n A 1 54 GLY 54 415 415 GLY GLY X . n A 1 55 TYR 55 416 416 TYR TYR X . n A 1 56 ASN 56 417 417 ASN ASN X . n A 1 57 ASP 57 418 418 ASP ASP X . n A 1 58 VAL 58 419 419 VAL VAL X . n A 1 59 LEU 59 420 420 LEU LEU X . n A 1 60 ASP 60 421 421 ASP ASP X . n A 1 61 ASN 61 422 422 ASN ASN X . n A 1 62 SER 62 423 423 SER SER X . n A 1 63 ASP 63 424 424 ASP ASP X . n A 1 64 VAL 64 425 425 VAL VAL X . n A 1 65 LEU 65 426 426 LEU LEU X . n A 1 66 ILE 66 427 427 ILE ILE X . n A 1 67 TYR 67 428 428 TYR TYR X . n A 1 68 THR 68 429 429 THR THR X . n A 1 69 GLY 69 430 430 GLY GLY X . n A 1 70 GLN 70 431 431 GLN GLN X . n A 1 71 GLY 71 432 432 GLY GLY X . n A 1 72 GLY 72 433 433 GLY GLY X . n A 1 73 ASN 73 434 434 ASN ASN X . n A 1 74 VAL 74 435 ? ? ? X . n A 1 75 GLY 75 436 ? ? ? X . n A 1 76 LYS 76 437 ? ? ? X . n A 1 77 LYS 77 438 ? ? ? X . n A 1 78 LYS 78 439 ? ? ? X . n A 1 79 ASN 79 440 ? ? ? X . n A 1 80 ASN 80 441 ? ? ? X . n A 1 81 GLU 81 442 ? ? ? X . n A 1 82 PRO 82 443 443 PRO PRO X . n A 1 83 PRO 83 444 444 PRO PRO X . n A 1 84 LYS 84 445 445 LYS LYS X . n A 1 85 ASP 85 446 446 ASP ASP X . n A 1 86 GLN 86 447 447 GLN GLN X . n A 1 87 GLN 87 448 448 GLN GLN X . n A 1 88 LEU 88 449 449 LEU LEU X . n A 1 89 VAL 89 450 450 VAL VAL X . n A 1 90 THR 90 451 451 THR THR X . n A 1 91 GLY 91 452 452 GLY GLY X . n A 1 92 ASN 92 453 453 ASN ASN X . n A 1 93 LEU 93 454 454 LEU LEU X . n A 1 94 ALA 94 455 455 ALA ALA X . n A 1 95 LEU 95 456 456 LEU LEU X . n A 1 96 LYS 96 457 457 LYS LYS X . n A 1 97 ASN 97 458 458 ASN ASN X . n A 1 98 SER 98 459 459 SER SER X . n A 1 99 ILE 99 460 460 ILE ILE X . n A 1 100 ASN 100 461 461 ASN ASN X . n A 1 101 LYS 101 462 462 LYS LYS X . n A 1 102 LYS 102 463 463 LYS LYS X . n A 1 103 ASN 103 464 464 ASN ASN X . n A 1 104 PRO 104 465 465 PRO PRO X . n A 1 105 VAL 105 466 466 VAL VAL X . n A 1 106 ARG 106 467 467 ARG ARG X . n A 1 107 VAL 107 468 468 VAL VAL X . n A 1 108 ILE 108 469 469 ILE ILE X . n A 1 109 ARG 109 470 470 ARG ARG X . n A 1 110 GLY 110 471 471 GLY GLY X . n A 1 111 ILE 111 472 472 ILE ILE X . n A 1 112 LYS 112 473 473 LYS LYS X . n A 1 113 ASN 113 474 ? ? ? X . n A 1 114 THR 114 475 ? ? ? X . n A 1 115 THR 115 476 ? ? ? X . n A 1 116 LEU 116 477 ? ? ? X . n A 1 117 GLN 117 478 ? ? ? X . n A 1 118 SER 118 479 ? ? ? X . n A 1 119 SER 119 480 ? ? ? X . n A 1 120 VAL 120 481 ? ? ? X . n A 1 121 VAL 121 482 ? ? ? X . n A 1 122 ALA 122 483 ? ? ? X . n A 1 123 LYS 123 484 484 LYS LYS X . n A 1 124 ASN 124 485 485 ASN ASN X . n A 1 125 TYR 125 486 486 TYR TYR X . n A 1 126 VAL 126 487 487 VAL VAL X . n A 1 127 TYR 127 488 488 TYR TYR X . n A 1 128 ASP 128 489 489 ASP ASP X . n A 1 129 GLY 129 490 490 GLY GLY X . n A 1 130 LEU 130 491 491 LEU LEU X . n A 1 131 TYR 131 492 492 TYR TYR X . n A 1 132 LEU 132 493 493 LEU LEU X . n A 1 133 VAL 133 494 494 VAL VAL X . n A 1 134 GLU 134 495 495 GLU GLU X . n A 1 135 GLU 135 496 496 GLU GLU X . n A 1 136 TYR 136 497 497 TYR TYR X . n A 1 137 TRP 137 498 498 TRP TRP X . n A 1 138 GLU 138 499 499 GLU GLU X . n A 1 139 GLU 139 500 500 GLU GLU X . n A 1 140 THR 140 501 501 THR THR X . n A 1 141 GLY 141 502 502 GLY GLY X . n A 1 142 SER 142 503 503 SER SER X . n A 1 143 HIS 143 504 504 HIS HIS X . n A 1 144 GLY 144 505 505 GLY GLY X . n A 1 145 LYS 145 506 506 LYS LYS X . n A 1 146 LEU 146 507 507 LEU LEU X . n A 1 147 VAL 147 508 508 VAL VAL X . n A 1 148 PHE 148 509 509 PHE PHE X . n A 1 149 LYS 149 510 510 LYS LYS X . n A 1 150 PHE 150 511 511 PHE PHE X . n A 1 151 LYS 151 512 512 LYS LYS X . n A 1 152 LEU 152 513 513 LEU LEU X . n A 1 153 ARG 153 514 514 ARG ARG X . n A 1 154 ARG 154 515 515 ARG ARG X . n A 1 155 ILE 155 516 516 ILE ILE X . n A 1 156 PRO 156 517 517 PRO PRO X . n A 1 157 GLY 157 518 518 GLY GLY X . n A 1 158 GLN 158 519 519 GLN GLN X . n A 1 159 PRO 159 520 520 PRO PRO X . n A 1 160 GLU 160 521 521 GLU GLU X . n A 1 161 LEU 161 522 522 LEU LEU X . n A 1 162 PRO 162 523 523 PRO PRO X . n A 1 163 TRP 163 524 524 TRP TRP X . n A 1 164 LYS 164 525 ? ? ? X . n A 1 165 GLU 165 526 ? ? ? X . n A 1 166 VAL 166 527 ? ? ? X . n A 1 167 ALA 167 528 ? ? ? X . n B 1 1 GLN 1 362 362 GLN GLN A . n B 1 2 ILE 2 363 363 ILE ILE A . n B 1 3 ILE 3 364 364 ILE ILE A . n B 1 4 GLY 4 365 365 GLY GLY A . n B 1 5 THR 5 366 366 THR THR A . n B 1 6 VAL 6 367 367 VAL VAL A . n B 1 7 PRO 7 368 368 PRO PRO A . n B 1 8 GLY 8 369 369 GLY GLY A . n B 1 9 VAL 9 370 370 VAL VAL A . n B 1 10 GLU 10 371 371 GLU GLU A . n B 1 11 VAL 11 372 372 VAL VAL A . n B 1 12 GLY 12 373 373 GLY GLY A . n B 1 13 ASP 13 374 374 ASP ASP A . n B 1 14 GLU 14 375 375 GLU GLU A . n B 1 15 PHE 15 376 376 PHE PHE A . n B 1 16 GLN 16 377 377 GLN GLN A . n B 1 17 TYR 17 378 378 TYR TYR A . n B 1 18 ARG 18 379 379 ARG ARG A . n B 1 19 MET 19 380 380 MET MET A . n B 1 20 GLU 20 381 381 GLU GLU A . n B 1 21 LEU 21 382 382 LEU LEU A . n B 1 22 ASN 22 383 383 ASN ASN A . n B 1 23 LEU 23 384 384 LEU LEU A . n B 1 24 LEU 24 385 385 LEU LEU A . n B 1 25 GLY 25 386 386 GLY GLY A . n B 1 26 ILE 26 387 387 ILE ILE A . n B 1 27 HIS 27 388 388 HIS HIS A . n B 1 28 ARG 28 389 389 ARG ARG A . n B 1 29 PRO 29 390 390 PRO PRO A . n B 1 30 SER 30 391 391 SER SER A . n B 1 31 GLN 31 392 392 GLN GLN A . n B 1 32 SER 32 393 393 SER SER A . n B 1 33 GLY 33 394 394 GLY GLY A . n B 1 34 ILE 34 395 395 ILE ILE A . n B 1 35 ASP 35 396 396 ASP ASP A . n B 1 36 TYR 36 397 397 TYR TYR A . n B 1 37 MET 37 398 398 MET MET A . n B 1 38 LYS 38 399 399 LYS LYS A . n B 1 39 ASP 39 400 400 ASP ASP A . n B 1 40 ASP 40 401 401 ASP ASP A . n B 1 41 GLY 41 402 402 GLY GLY A . n B 1 42 GLY 42 403 403 GLY GLY A . n B 1 43 GLU 43 404 404 GLU GLU A . n B 1 44 LEU 44 405 405 LEU LEU A . n B 1 45 VAL 45 406 406 VAL VAL A . n B 1 46 ALA 46 407 407 ALA ALA A . n B 1 47 THR 47 408 408 THR THR A . n B 1 48 SER 48 409 409 SER SER A . n B 1 49 ILE 49 410 410 ILE ILE A . n B 1 50 VAL 50 411 411 VAL VAL A . n B 1 51 SER 51 412 412 SER SER A . n B 1 52 SER 52 413 413 SER SER A . n B 1 53 GLY 53 414 414 GLY GLY A . n B 1 54 GLY 54 415 415 GLY GLY A . n B 1 55 TYR 55 416 416 TYR TYR A . n B 1 56 ASN 56 417 417 ASN ASN A . n B 1 57 ASP 57 418 418 ASP ASP A . n B 1 58 VAL 58 419 419 VAL VAL A . n B 1 59 LEU 59 420 420 LEU LEU A . n B 1 60 ASP 60 421 421 ASP ASP A . n B 1 61 ASN 61 422 422 ASN ASN A . n B 1 62 SER 62 423 423 SER SER A . n B 1 63 ASP 63 424 424 ASP ASP A . n B 1 64 VAL 64 425 425 VAL VAL A . n B 1 65 LEU 65 426 426 LEU LEU A . n B 1 66 ILE 66 427 427 ILE ILE A . n B 1 67 TYR 67 428 428 TYR TYR A . n B 1 68 THR 68 429 429 THR THR A . n B 1 69 GLY 69 430 430 GLY GLY A . n B 1 70 GLN 70 431 431 GLN GLN A . n B 1 71 GLY 71 432 432 GLY GLY A . n B 1 72 GLY 72 433 433 GLY GLY A . n B 1 73 ASN 73 434 434 ASN ASN A . n B 1 74 VAL 74 435 ? ? ? A . n B 1 75 GLY 75 436 ? ? ? A . n B 1 76 LYS 76 437 ? ? ? A . n B 1 77 LYS 77 438 ? ? ? A . n B 1 78 LYS 78 439 ? ? ? A . n B 1 79 ASN 79 440 ? ? ? A . n B 1 80 ASN 80 441 ? ? ? A . n B 1 81 GLU 81 442 442 GLU GLU A . n B 1 82 PRO 82 443 443 PRO PRO A . n B 1 83 PRO 83 444 444 PRO PRO A . n B 1 84 LYS 84 445 445 LYS LYS A . n B 1 85 ASP 85 446 446 ASP ASP A . n B 1 86 GLN 86 447 447 GLN GLN A . n B 1 87 GLN 87 448 448 GLN GLN A . n B 1 88 LEU 88 449 449 LEU LEU A . n B 1 89 VAL 89 450 450 VAL VAL A . n B 1 90 THR 90 451 451 THR THR A . n B 1 91 GLY 91 452 452 GLY GLY A . n B 1 92 ASN 92 453 453 ASN ASN A . n B 1 93 LEU 93 454 454 LEU LEU A . n B 1 94 ALA 94 455 455 ALA ALA A . n B 1 95 LEU 95 456 456 LEU LEU A . n B 1 96 LYS 96 457 457 LYS LYS A . n B 1 97 ASN 97 458 458 ASN ASN A . n B 1 98 SER 98 459 459 SER SER A . n B 1 99 ILE 99 460 460 ILE ILE A . n B 1 100 ASN 100 461 461 ASN ASN A . n B 1 101 LYS 101 462 462 LYS LYS A . n B 1 102 LYS 102 463 463 LYS LYS A . n B 1 103 ASN 103 464 464 ASN ASN A . n B 1 104 PRO 104 465 465 PRO PRO A . n B 1 105 VAL 105 466 466 VAL VAL A . n B 1 106 ARG 106 467 467 ARG ARG A . n B 1 107 VAL 107 468 468 VAL VAL A . n B 1 108 ILE 108 469 469 ILE ILE A . n B 1 109 ARG 109 470 470 ARG ARG A . n B 1 110 GLY 110 471 471 GLY GLY A . n B 1 111 ILE 111 472 472 ILE ILE A . n B 1 112 LYS 112 473 473 LYS LYS A . n B 1 113 ASN 113 474 ? ? ? A . n B 1 114 THR 114 475 ? ? ? A . n B 1 115 THR 115 476 ? ? ? A . n B 1 116 LEU 116 477 ? ? ? A . n B 1 117 GLN 117 478 ? ? ? A . n B 1 118 SER 118 479 ? ? ? A . n B 1 119 SER 119 480 ? ? ? A . n B 1 120 VAL 120 481 ? ? ? A . n B 1 121 VAL 121 482 ? ? ? A . n B 1 122 ALA 122 483 ? ? ? A . n B 1 123 LYS 123 484 484 LYS LYS A . n B 1 124 ASN 124 485 485 ASN ASN A . n B 1 125 TYR 125 486 486 TYR TYR A . n B 1 126 VAL 126 487 487 VAL VAL A . n B 1 127 TYR 127 488 488 TYR TYR A . n B 1 128 ASP 128 489 489 ASP ASP A . n B 1 129 GLY 129 490 490 GLY GLY A . n B 1 130 LEU 130 491 491 LEU LEU A . n B 1 131 TYR 131 492 492 TYR TYR A . n B 1 132 LEU 132 493 493 LEU LEU A . n B 1 133 VAL 133 494 494 VAL VAL A . n B 1 134 GLU 134 495 495 GLU GLU A . n B 1 135 GLU 135 496 496 GLU GLU A . n B 1 136 TYR 136 497 497 TYR TYR A . n B 1 137 TRP 137 498 498 TRP TRP A . n B 1 138 GLU 138 499 499 GLU GLU A . n B 1 139 GLU 139 500 500 GLU GLU A . n B 1 140 THR 140 501 501 THR THR A . n B 1 141 GLY 141 502 502 GLY GLY A . n B 1 142 SER 142 503 503 SER SER A . n B 1 143 HIS 143 504 504 HIS HIS A . n B 1 144 GLY 144 505 505 GLY GLY A . n B 1 145 LYS 145 506 506 LYS LYS A . n B 1 146 LEU 146 507 507 LEU LEU A . n B 1 147 VAL 147 508 508 VAL VAL A . n B 1 148 PHE 148 509 509 PHE PHE A . n B 1 149 LYS 149 510 510 LYS LYS A . n B 1 150 PHE 150 511 511 PHE PHE A . n B 1 151 LYS 151 512 512 LYS LYS A . n B 1 152 LEU 152 513 513 LEU LEU A . n B 1 153 ARG 153 514 514 ARG ARG A . n B 1 154 ARG 154 515 515 ARG ARG A . n B 1 155 ILE 155 516 516 ILE ILE A . n B 1 156 PRO 156 517 517 PRO PRO A . n B 1 157 GLY 157 518 518 GLY GLY A . n B 1 158 GLN 158 519 519 GLN GLN A . n B 1 159 PRO 159 520 520 PRO PRO A . n B 1 160 GLU 160 521 521 GLU GLU A . n B 1 161 LEU 161 522 522 LEU LEU A . n B 1 162 PRO 162 523 523 PRO PRO A . n B 1 163 TRP 163 524 524 TRP TRP A . n B 1 164 LYS 164 525 ? ? ? A . n B 1 165 GLU 165 526 ? ? ? A . n B 1 166 VAL 166 527 ? ? ? A . n B 1 167 ALA 167 528 ? ? ? A . n C 2 1 DC 1 1 1 DC DC B . n C 2 2 DT 2 2 2 DT DT B . n C 2 3 DG 3 3 3 DG DG B . n C 2 4 DA 4 4 4 DA DA B . n C 2 5 DG 5 5 5 DG DG B . n C 2 6 DG 6 6 6 DG DG B . n C 2 7 DA 7 7 7 DA DA B . n C 2 8 DG 8 8 8 DG DG B . n C 2 9 DT 9 9 9 DT DT B . n C 2 10 DA 10 10 10 DA DA B . n C 2 11 DT 11 11 11 DT DT B . n D 3 1 DT 1 1 1 DT DT C . n D 3 2 DA 2 2 2 DA DA C . n D 3 3 DC 3 3 3 DC DC C . n D 3 4 DT 4 4 4 DT DT C . n D 3 5 5CM 5 5 5 5CM 5CM C . n D 3 6 DC 6 6 6 DC DC C . n D 3 7 DT 7 7 7 DT DT C . n D 3 8 DC 8 8 8 DC DC C . n D 3 9 DA 9 9 9 DA DA C . n D 3 10 DG 10 10 10 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 3 3 HOH HOH X . E 4 HOH 2 6 6 HOH HOH X . E 4 HOH 3 8 8 HOH HOH X . E 4 HOH 4 10 10 HOH HOH X . E 4 HOH 5 11 11 HOH HOH X . E 4 HOH 6 17 17 HOH HOH X . E 4 HOH 7 18 18 HOH HOH X . F 4 HOH 1 4 4 HOH HOH A . F 4 HOH 2 7 7 HOH HOH A . F 4 HOH 3 12 12 HOH HOH A . F 4 HOH 4 13 13 HOH HOH A . F 4 HOH 5 14 14 HOH HOH A . F 4 HOH 6 16 16 HOH HOH A . G 4 HOH 1 12 2 HOH HOH B . G 4 HOH 2 15 15 HOH HOH B . H 4 HOH 1 11 1 HOH HOH C . H 4 HOH 2 12 5 HOH HOH C . H 4 HOH 3 13 9 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X ASP 401 ? CB ? A ASP 40 CB 2 1 Y 1 X ASP 401 ? CG ? A ASP 40 CG 3 1 Y 1 X ASP 401 ? OD1 ? A ASP 40 OD1 4 1 Y 1 X ASP 401 ? OD2 ? A ASP 40 OD2 5 1 Y 1 X GLU 404 ? CG ? A GLU 43 CG 6 1 Y 1 X GLU 404 ? CD ? A GLU 43 CD 7 1 Y 1 X GLU 404 ? OE1 ? A GLU 43 OE1 8 1 Y 1 X GLU 404 ? OE2 ? A GLU 43 OE2 9 1 Y 1 X LYS 473 ? CG ? A LYS 112 CG 10 1 Y 1 X LYS 473 ? CD ? A LYS 112 CD 11 1 Y 1 X LYS 473 ? CE ? A LYS 112 CE 12 1 Y 1 X LYS 473 ? NZ ? A LYS 112 NZ 13 1 Y 1 X LYS 506 ? CG ? A LYS 145 CG 14 1 Y 1 X LYS 506 ? CD ? A LYS 145 CD 15 1 Y 1 X LYS 506 ? CE ? A LYS 145 CE 16 1 Y 1 X LYS 506 ? NZ ? A LYS 145 NZ 17 1 Y 1 X GLU 521 ? CG ? A GLU 160 CG 18 1 Y 1 X GLU 521 ? CD ? A GLU 160 CD 19 1 Y 1 X GLU 521 ? OE1 ? A GLU 160 OE1 20 1 Y 1 X GLU 521 ? OE2 ? A GLU 160 OE2 21 1 Y 1 X TRP 524 ? CG ? A TRP 163 CG 22 1 Y 1 X TRP 524 ? CD1 ? A TRP 163 CD1 23 1 Y 1 X TRP 524 ? CD2 ? A TRP 163 CD2 24 1 Y 1 X TRP 524 ? NE1 ? A TRP 163 NE1 25 1 Y 1 X TRP 524 ? CE2 ? A TRP 163 CE2 26 1 Y 1 X TRP 524 ? CE3 ? A TRP 163 CE3 27 1 Y 1 X TRP 524 ? CZ2 ? A TRP 163 CZ2 28 1 Y 1 X TRP 524 ? CZ3 ? A TRP 163 CZ3 29 1 Y 1 X TRP 524 ? CH2 ? A TRP 163 CH2 30 1 Y 1 A ASP 401 ? CB ? B ASP 40 CB 31 1 Y 1 A ASP 401 ? CG ? B ASP 40 CG 32 1 Y 1 A ASP 401 ? OD1 ? B ASP 40 OD1 33 1 Y 1 A ASP 401 ? OD2 ? B ASP 40 OD2 34 1 Y 1 A ASN 417 ? CG ? B ASN 56 CG 35 1 Y 1 A ASN 417 ? OD1 ? B ASN 56 OD1 36 1 Y 1 A ASN 417 ? ND2 ? B ASN 56 ND2 37 1 Y 1 A GLU 442 ? CG ? B GLU 81 CG 38 1 Y 1 A GLU 442 ? CD ? B GLU 81 CD 39 1 Y 1 A GLU 442 ? OE1 ? B GLU 81 OE1 40 1 Y 1 A GLU 442 ? OE2 ? B GLU 81 OE2 41 1 Y 1 A LYS 473 ? CG ? B LYS 112 CG 42 1 Y 1 A LYS 473 ? CD ? B LYS 112 CD 43 1 Y 1 A LYS 473 ? CE ? B LYS 112 CE 44 1 Y 1 A LYS 473 ? NZ ? B LYS 112 NZ 45 1 Y 1 A LYS 484 ? CG ? B LYS 123 CG 46 1 Y 1 A LYS 484 ? CD ? B LYS 123 CD 47 1 Y 1 A LYS 484 ? CE ? B LYS 123 CE 48 1 Y 1 A LYS 484 ? NZ ? B LYS 123 NZ 49 1 Y 1 A GLU 521 ? CG ? B GLU 160 CG 50 1 Y 1 A GLU 521 ? CD ? B GLU 160 CD 51 1 Y 1 A GLU 521 ? OE1 ? B GLU 160 OE1 52 1 Y 1 A GLU 521 ? OE2 ? B GLU 160 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing MR ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3Q0F _cell.length_a 102.968 _cell.length_b 102.968 _cell.length_c 170.493 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3Q0F _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3Q0F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 59.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '18% PEG4000, 100 mM Na-cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ;Cryogenically-cooled single crystal Si(111) side bounce monochromator. Optional Si(311) to achive 13.474 keV. Vertical and horizantal focussing mirrors in Kirkpatrick-Baez geometry. ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Cryogenically-cooled single crystal Si(111) side bounce monochromator. Optional Si(311) to achive 13.474 keV.' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 3Q0F _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.75 _reflns.number_obs 14578 _reflns.number_all 14607 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 26 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.7 _reflns_shell.pdbx_Rsym_value 0.59 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 9.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3Q0F _refine.ls_number_reflns_obs 14466 _refine.ls_number_reflns_all 14500 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.283 _refine.ls_d_res_high 2.750 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.2315 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2294 _refine.ls_R_factor_R_free 0.2732 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.04 _refine.ls_number_reflns_R_free 729 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 7.7339 _refine.aniso_B[2][2] 7.7339 _refine.aniso_B[3][3] -15.4678 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.290 _refine.solvent_model_param_bsol 53.600 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'SRA molecule from the SUVH5 SRA-fully methylated CG DNA crystallized in P42212 space group' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 1.09 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 25.07 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2239 _refine_hist.pdbx_number_atoms_nucleic_acid 425 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 2682 _refine_hist.d_res_high 2.750 _refine_hist.d_res_low 29.283 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2757 'X-RAY DIFFRACTION' ? f_angle_d 1.294 ? ? 3817 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.905 ? ? 1040 'X-RAY DIFFRACTION' ? f_chiral_restr 0.071 ? ? 415 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 425 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 X 300 ? ? POSITIONAL 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 A 300 0.026 ? POSITIONAL 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 X 64 ? ? POSITIONAL 2 3 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 A 64 0.030 ? POSITIONAL 2 4 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 X 645 ? ? POSITIONAL 3 5 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 A 645 0.041 ? POSITIONAL 3 6 'X-RAY DIFFRACTION' ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.7500 2.9622 2655 0.2957 100.00 0.3353 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.9622 3.2599 2679 0.2555 100.00 0.3349 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.2599 3.7308 2734 0.2161 100.00 0.2384 . . 125 . . . . 'X-RAY DIFFRACTION' . 3.7308 4.6973 2763 0.1871 100.00 0.2320 . . 152 . . . . 'X-RAY DIFFRACTION' . 4.6973 29.2842 2906 0.2351 99.00 0.2798 . . 148 . . . . 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 ? 1 2 ? 1 1 ? 2 2 ? 2 1 ? 3 2 ? 3 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'chain X resid 362:399' ? ? 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'chain A and resid 362:399' ? ? 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 2 'chain X resid 405:414' ? ? 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 2 'chain A and resid 405:414' ? ? 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 3 'chain X resid 424:524' ? ? 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 3 'chain A and resid 424:524' ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _database_PDB_matrix.entry_id 3Q0F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3Q0F _struct.title 'Crystal structure of SUVH5 SRA- methylated CHH DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q0F _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'SRA, fully methylated CG, SUVH5, 5mC binding domain, Methylated CHH duplex DNA, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SUVH5_ARATH O82175 1 ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; 362 ? 2 PDB 3Q0F 3Q0F 2 CTGAGGAGTAT 1 ? 3 PDB 3Q0F 3Q0F 3 TACTCCTCAG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3Q0F X 1 ? 167 ? O82175 362 ? 528 ? 362 528 2 1 3Q0F A 1 ? 167 ? O82175 362 ? 528 ? 362 528 3 2 3Q0F B 1 ? 11 ? 3Q0F 1 ? 11 ? 1 11 4 3 3Q0F C 1 ? 10 ? 3Q0F 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4780 ? 1 MORE -17 ? 1 'SSA (A^2)' 16530 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 17 ? LEU A 24 ? TYR X 378 LEU X 385 1 ? 8 HELX_P HELX_P2 2 VAL A 89 ? LYS A 102 ? VAL X 450 LYS X 463 1 ? 14 HELX_P HELX_P3 3 TYR B 17 ? LEU B 24 ? TYR A 378 LEU A 385 1 ? 8 HELX_P HELX_P4 4 VAL B 89 ? LYS B 102 ? VAL A 450 LYS A 463 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? D DT 4 "O3'" ? ? ? 1_555 D 5CM 5 P ? ? C DT 4 C 5CM 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? D 5CM 5 "O3'" ? ? ? 1_555 D DC 6 P ? ? C 5CM 5 C DC 6 1_555 ? ? ? ? ? ? ? 1.599 ? ? hydrog1 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 10 N1 ? ? B DC 1 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 10 O6 ? ? B DC 1 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 10 N2 ? ? B DC 1 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DC 8 N4 ? ? B DT 2 C DC 8 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog5 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? B DT 2 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? B DT 2 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 8 O2 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog8 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 7 N3 ? ? B DA 4 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 7 O4 ? ? B DA 4 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 4 N3 ? ? B DA 7 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 4 O4 ? ? B DA 7 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 3 N3 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 3 O2 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 3 N4 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 2 N1 ? ? B DT 9 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 2 N6 ? ? B DT 9 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 40 B . ? ASP 401 A GLY 41 B ? GLY 402 A 1 -0.60 2 GLY 41 B . ? GLY 402 A GLY 42 B ? GLY 403 A 1 -0.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 14 ? PHE A 15 ? GLU X 375 PHE X 376 A 2 TYR A 125 ? THR A 140 ? TYR X 486 THR X 501 A 3 VAL A 105 ? GLY A 110 ? VAL X 466 GLY X 471 A 4 LEU A 44 ? SER A 51 ? LEU X 405 SER X 412 A 5 ILE A 34 ? LYS A 38 ? ILE X 395 LYS X 399 B 1 GLU A 14 ? PHE A 15 ? GLU X 375 PHE X 376 B 2 TYR A 125 ? THR A 140 ? TYR X 486 THR X 501 B 3 LEU A 146 ? ARG A 154 ? LEU X 507 ARG X 515 B 4 VAL A 64 ? THR A 68 ? VAL X 425 THR X 429 C 1 GLU B 14 ? PHE B 15 ? GLU A 375 PHE A 376 C 2 TYR B 125 ? THR B 140 ? TYR A 486 THR A 501 C 3 VAL B 105 ? GLY B 110 ? VAL A 466 GLY A 471 C 4 LEU B 44 ? SER B 51 ? LEU A 405 SER A 412 C 5 ILE B 34 ? LYS B 38 ? ILE A 395 LYS A 399 D 1 GLU B 14 ? PHE B 15 ? GLU A 375 PHE A 376 D 2 TYR B 125 ? THR B 140 ? TYR A 486 THR A 501 D 3 LEU B 146 ? ARG B 154 ? LEU A 507 ARG A 515 D 4 VAL B 64 ? THR B 68 ? VAL A 425 THR A 429 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 15 ? N PHE X 376 O TYR A 125 ? O TYR X 486 A 2 3 O ASP A 128 ? O ASP X 489 N VAL A 107 ? N VAL X 468 A 3 4 O ILE A 108 ? O ILE X 469 N SER A 51 ? N SER X 412 A 4 5 O THR A 47 ? O THR X 408 N ASP A 35 ? N ASP X 396 B 1 2 N PHE A 15 ? N PHE X 376 O TYR A 125 ? O TYR X 486 B 2 3 N GLU A 139 ? N GLU X 500 O VAL A 147 ? O VAL X 508 B 3 4 O PHE A 150 ? O PHE X 511 N TYR A 67 ? N TYR X 428 C 1 2 N PHE B 15 ? N PHE A 376 O TYR B 125 ? O TYR A 486 C 2 3 O ASP B 128 ? O ASP A 489 N VAL B 107 ? N VAL A 468 C 3 4 O ILE B 108 ? O ILE A 469 N SER B 51 ? N SER A 412 C 4 5 O THR B 47 ? O THR A 408 N ASP B 35 ? N ASP A 396 D 1 2 N PHE B 15 ? N PHE A 376 O TYR B 125 ? O TYR A 486 D 2 3 N GLU B 139 ? N GLU A 500 O VAL B 147 ? O VAL A 508 D 3 4 O PHE B 150 ? O PHE A 511 N TYR B 67 ? N TYR A 428 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 101.55 104.50 -2.95 0.40 N 2 1 "C3'" B DG 3 ? ? "C2'" B DG 3 ? ? "C1'" B DG 3 ? ? 93.70 102.40 -8.70 0.80 N 3 1 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 114.27 108.30 5.97 0.30 N 4 1 "C3'" B DG 6 ? ? "C2'" B DG 6 ? ? "C1'" B DG 6 ? ? 95.89 102.40 -6.51 0.80 N 5 1 "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? "C1'" B DT 9 ? ? 97.51 102.40 -4.89 0.80 N 6 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.62 108.30 2.32 0.30 N 7 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 115.68 108.30 7.38 0.30 N 8 1 "C3'" C DC 6 ? ? "O3'" C DC 6 ? ? P C DT 7 ? ? 129.18 119.70 9.48 1.20 Y 9 1 N1 C DT 7 ? ? "C1'" C DT 7 ? ? "C2'" C DT 7 ? ? 123.38 114.30 9.08 1.40 N 10 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 101.58 108.00 -6.42 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN X 392 ? ? -136.06 -45.30 2 1 SER X 413 ? ? -97.40 -123.52 3 1 ASP X 421 ? ? -137.90 -125.40 4 1 ASN X 422 ? ? -115.26 52.56 5 1 THR X 451 ? ? 48.38 -127.81 6 1 PRO X 520 ? ? -48.57 156.73 7 1 GLN A 392 ? ? -136.04 -44.61 8 1 SER A 413 ? ? -97.60 -123.17 9 1 ASN A 417 ? ? -53.78 88.19 10 1 ASP A 421 ? ? -75.84 -144.89 11 1 THR A 451 ? ? 48.64 -128.50 12 1 PRO A 520 ? ? -48.72 157.71 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id D _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X VAL 435 ? A VAL 74 2 1 Y 1 X GLY 436 ? A GLY 75 3 1 Y 1 X LYS 437 ? A LYS 76 4 1 Y 1 X LYS 438 ? A LYS 77 5 1 Y 1 X LYS 439 ? A LYS 78 6 1 Y 1 X ASN 440 ? A ASN 79 7 1 Y 1 X ASN 441 ? A ASN 80 8 1 Y 1 X GLU 442 ? A GLU 81 9 1 Y 1 X ASN 474 ? A ASN 113 10 1 Y 1 X THR 475 ? A THR 114 11 1 Y 1 X THR 476 ? A THR 115 12 1 Y 1 X LEU 477 ? A LEU 116 13 1 Y 1 X GLN 478 ? A GLN 117 14 1 Y 1 X SER 479 ? A SER 118 15 1 Y 1 X SER 480 ? A SER 119 16 1 Y 1 X VAL 481 ? A VAL 120 17 1 Y 1 X VAL 482 ? A VAL 121 18 1 Y 1 X ALA 483 ? A ALA 122 19 1 Y 1 X LYS 525 ? A LYS 164 20 1 Y 1 X GLU 526 ? A GLU 165 21 1 Y 1 X VAL 527 ? A VAL 166 22 1 Y 1 X ALA 528 ? A ALA 167 23 1 Y 1 A VAL 435 ? B VAL 74 24 1 Y 1 A GLY 436 ? B GLY 75 25 1 Y 1 A LYS 437 ? B LYS 76 26 1 Y 1 A LYS 438 ? B LYS 77 27 1 Y 1 A LYS 439 ? B LYS 78 28 1 Y 1 A ASN 440 ? B ASN 79 29 1 Y 1 A ASN 441 ? B ASN 80 30 1 Y 1 A ASN 474 ? B ASN 113 31 1 Y 1 A THR 475 ? B THR 114 32 1 Y 1 A THR 476 ? B THR 115 33 1 Y 1 A LEU 477 ? B LEU 116 34 1 Y 1 A GLN 478 ? B GLN 117 35 1 Y 1 A SER 479 ? B SER 118 36 1 Y 1 A SER 480 ? B SER 119 37 1 Y 1 A VAL 481 ? B VAL 120 38 1 Y 1 A VAL 482 ? B VAL 121 39 1 Y 1 A ALA 483 ? B ALA 122 40 1 Y 1 A LYS 525 ? B LYS 164 41 1 Y 1 A GLU 526 ? B GLU 165 42 1 Y 1 A VAL 527 ? B VAL 166 43 1 Y 1 A ALA 528 ? B ALA 167 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 DA OP3 O N N 111 DA P P N N 112 DA OP1 O N N 113 DA OP2 O N N 114 DA "O5'" O N N 115 DA "C5'" C N N 116 DA "C4'" C N R 117 DA "O4'" O N N 118 DA "C3'" C N S 119 DA "O3'" O N N 120 DA "C2'" C N N 121 DA "C1'" C N R 122 DA N9 N Y N 123 DA C8 C Y N 124 DA N7 N Y N 125 DA C5 C Y N 126 DA C6 C Y N 127 DA N6 N N N 128 DA N1 N Y N 129 DA C2 C Y N 130 DA N3 N Y N 131 DA C4 C Y N 132 DA HOP3 H N N 133 DA HOP2 H N N 134 DA "H5'" H N N 135 DA "H5''" H N N 136 DA "H4'" H N N 137 DA "H3'" H N N 138 DA "HO3'" H N N 139 DA "H2'" H N N 140 DA "H2''" H N N 141 DA "H1'" H N N 142 DA H8 H N N 143 DA H61 H N N 144 DA H62 H N N 145 DA H2 H N N 146 DC OP3 O N N 147 DC P P N N 148 DC OP1 O N N 149 DC OP2 O N N 150 DC "O5'" O N N 151 DC "C5'" C N N 152 DC "C4'" C N R 153 DC "O4'" O N N 154 DC "C3'" C N S 155 DC "O3'" O N N 156 DC "C2'" C N N 157 DC "C1'" C N R 158 DC N1 N N N 159 DC C2 C N N 160 DC O2 O N N 161 DC N3 N N N 162 DC C4 C N N 163 DC N4 N N N 164 DC C5 C N N 165 DC C6 C N N 166 DC HOP3 H N N 167 DC HOP2 H N N 168 DC "H5'" H N N 169 DC "H5''" H N N 170 DC "H4'" H N N 171 DC "H3'" H N N 172 DC "HO3'" H N N 173 DC "H2'" H N N 174 DC "H2''" H N N 175 DC "H1'" H N N 176 DC H41 H N N 177 DC H42 H N N 178 DC H5 H N N 179 DC H6 H N N 180 DG OP3 O N N 181 DG P P N N 182 DG OP1 O N N 183 DG OP2 O N N 184 DG "O5'" O N N 185 DG "C5'" C N N 186 DG "C4'" C N R 187 DG "O4'" O N N 188 DG "C3'" C N S 189 DG "O3'" O N N 190 DG "C2'" C N N 191 DG "C1'" C N R 192 DG N9 N Y N 193 DG C8 C Y N 194 DG N7 N Y N 195 DG C5 C Y N 196 DG C6 C N N 197 DG O6 O N N 198 DG N1 N N N 199 DG C2 C N N 200 DG N2 N N N 201 DG N3 N N N 202 DG C4 C Y N 203 DG HOP3 H N N 204 DG HOP2 H N N 205 DG "H5'" H N N 206 DG "H5''" H N N 207 DG "H4'" H N N 208 DG "H3'" H N N 209 DG "HO3'" H N N 210 DG "H2'" H N N 211 DG "H2''" H N N 212 DG "H1'" H N N 213 DG H8 H N N 214 DG H1 H N N 215 DG H21 H N N 216 DG H22 H N N 217 DT OP3 O N N 218 DT P P N N 219 DT OP1 O N N 220 DT OP2 O N N 221 DT "O5'" O N N 222 DT "C5'" C N N 223 DT "C4'" C N R 224 DT "O4'" O N N 225 DT "C3'" C N S 226 DT "O3'" O N N 227 DT "C2'" C N N 228 DT "C1'" C N R 229 DT N1 N N N 230 DT C2 C N N 231 DT O2 O N N 232 DT N3 N N N 233 DT C4 C N N 234 DT O4 O N N 235 DT C5 C N N 236 DT C7 C N N 237 DT C6 C N N 238 DT HOP3 H N N 239 DT HOP2 H N N 240 DT "H5'" H N N 241 DT "H5''" H N N 242 DT "H4'" H N N 243 DT "H3'" H N N 244 DT "HO3'" H N N 245 DT "H2'" H N N 246 DT "H2''" H N N 247 DT "H1'" H N N 248 DT H3 H N N 249 DT H71 H N N 250 DT H72 H N N 251 DT H73 H N N 252 DT H6 H N N 253 GLN N N N N 254 GLN CA C N S 255 GLN C C N N 256 GLN O O N N 257 GLN CB C N N 258 GLN CG C N N 259 GLN CD C N N 260 GLN OE1 O N N 261 GLN NE2 N N N 262 GLN OXT O N N 263 GLN H H N N 264 GLN H2 H N N 265 GLN HA H N N 266 GLN HB2 H N N 267 GLN HB3 H N N 268 GLN HG2 H N N 269 GLN HG3 H N N 270 GLN HE21 H N N 271 GLN HE22 H N N 272 GLN HXT H N N 273 GLU N N N N 274 GLU CA C N S 275 GLU C C N N 276 GLU O O N N 277 GLU CB C N N 278 GLU CG C N N 279 GLU CD C N N 280 GLU OE1 O N N 281 GLU OE2 O N N 282 GLU OXT O N N 283 GLU H H N N 284 GLU H2 H N N 285 GLU HA H N N 286 GLU HB2 H N N 287 GLU HB3 H N N 288 GLU HG2 H N N 289 GLU HG3 H N N 290 GLU HE2 H N N 291 GLU HXT H N N 292 GLY N N N N 293 GLY CA C N N 294 GLY C C N N 295 GLY O O N N 296 GLY OXT O N N 297 GLY H H N N 298 GLY H2 H N N 299 GLY HA2 H N N 300 GLY HA3 H N N 301 GLY HXT H N N 302 HIS N N N N 303 HIS CA C N S 304 HIS C C N N 305 HIS O O N N 306 HIS CB C N N 307 HIS CG C Y N 308 HIS ND1 N Y N 309 HIS CD2 C Y N 310 HIS CE1 C Y N 311 HIS NE2 N Y N 312 HIS OXT O N N 313 HIS H H N N 314 HIS H2 H N N 315 HIS HA H N N 316 HIS HB2 H N N 317 HIS HB3 H N N 318 HIS HD1 H N N 319 HIS HD2 H N N 320 HIS HE1 H N N 321 HIS HE2 H N N 322 HIS HXT H N N 323 HOH O O N N 324 HOH H1 H N N 325 HOH H2 H N N 326 ILE N N N N 327 ILE CA C N S 328 ILE C C N N 329 ILE O O N N 330 ILE CB C N S 331 ILE CG1 C N N 332 ILE CG2 C N N 333 ILE CD1 C N N 334 ILE OXT O N N 335 ILE H H N N 336 ILE H2 H N N 337 ILE HA H N N 338 ILE HB H N N 339 ILE HG12 H N N 340 ILE HG13 H N N 341 ILE HG21 H N N 342 ILE HG22 H N N 343 ILE HG23 H N N 344 ILE HD11 H N N 345 ILE HD12 H N N 346 ILE HD13 H N N 347 ILE HXT H N N 348 LEU N N N N 349 LEU CA C N S 350 LEU C C N N 351 LEU O O N N 352 LEU CB C N N 353 LEU CG C N N 354 LEU CD1 C N N 355 LEU CD2 C N N 356 LEU OXT O N N 357 LEU H H N N 358 LEU H2 H N N 359 LEU HA H N N 360 LEU HB2 H N N 361 LEU HB3 H N N 362 LEU HG H N N 363 LEU HD11 H N N 364 LEU HD12 H N N 365 LEU HD13 H N N 366 LEU HD21 H N N 367 LEU HD22 H N N 368 LEU HD23 H N N 369 LEU HXT H N N 370 LYS N N N N 371 LYS CA C N S 372 LYS C C N N 373 LYS O O N N 374 LYS CB C N N 375 LYS CG C N N 376 LYS CD C N N 377 LYS CE C N N 378 LYS NZ N N N 379 LYS OXT O N N 380 LYS H H N N 381 LYS H2 H N N 382 LYS HA H N N 383 LYS HB2 H N N 384 LYS HB3 H N N 385 LYS HG2 H N N 386 LYS HG3 H N N 387 LYS HD2 H N N 388 LYS HD3 H N N 389 LYS HE2 H N N 390 LYS HE3 H N N 391 LYS HZ1 H N N 392 LYS HZ2 H N N 393 LYS HZ3 H N N 394 LYS HXT H N N 395 MET N N N N 396 MET CA C N S 397 MET C C N N 398 MET O O N N 399 MET CB C N N 400 MET CG C N N 401 MET SD S N N 402 MET CE C N N 403 MET OXT O N N 404 MET H H N N 405 MET H2 H N N 406 MET HA H N N 407 MET HB2 H N N 408 MET HB3 H N N 409 MET HG2 H N N 410 MET HG3 H N N 411 MET HE1 H N N 412 MET HE2 H N N 413 MET HE3 H N N 414 MET HXT H N N 415 PHE N N N N 416 PHE CA C N S 417 PHE C C N N 418 PHE O O N N 419 PHE CB C N N 420 PHE CG C Y N 421 PHE CD1 C Y N 422 PHE CD2 C Y N 423 PHE CE1 C Y N 424 PHE CE2 C Y N 425 PHE CZ C Y N 426 PHE OXT O N N 427 PHE H H N N 428 PHE H2 H N N 429 PHE HA H N N 430 PHE HB2 H N N 431 PHE HB3 H N N 432 PHE HD1 H N N 433 PHE HD2 H N N 434 PHE HE1 H N N 435 PHE HE2 H N N 436 PHE HZ H N N 437 PHE HXT H N N 438 PRO N N N N 439 PRO CA C N S 440 PRO C C N N 441 PRO O O N N 442 PRO CB C N N 443 PRO CG C N N 444 PRO CD C N N 445 PRO OXT O N N 446 PRO H H N N 447 PRO HA H N N 448 PRO HB2 H N N 449 PRO HB3 H N N 450 PRO HG2 H N N 451 PRO HG3 H N N 452 PRO HD2 H N N 453 PRO HD3 H N N 454 PRO HXT H N N 455 SER N N N N 456 SER CA C N S 457 SER C C N N 458 SER O O N N 459 SER CB C N N 460 SER OG O N N 461 SER OXT O N N 462 SER H H N N 463 SER H2 H N N 464 SER HA H N N 465 SER HB2 H N N 466 SER HB3 H N N 467 SER HG H N N 468 SER HXT H N N 469 THR N N N N 470 THR CA C N S 471 THR C C N N 472 THR O O N N 473 THR CB C N R 474 THR OG1 O N N 475 THR CG2 C N N 476 THR OXT O N N 477 THR H H N N 478 THR H2 H N N 479 THR HA H N N 480 THR HB H N N 481 THR HG1 H N N 482 THR HG21 H N N 483 THR HG22 H N N 484 THR HG23 H N N 485 THR HXT H N N 486 TRP N N N N 487 TRP CA C N S 488 TRP C C N N 489 TRP O O N N 490 TRP CB C N N 491 TRP CG C Y N 492 TRP CD1 C Y N 493 TRP CD2 C Y N 494 TRP NE1 N Y N 495 TRP CE2 C Y N 496 TRP CE3 C Y N 497 TRP CZ2 C Y N 498 TRP CZ3 C Y N 499 TRP CH2 C Y N 500 TRP OXT O N N 501 TRP H H N N 502 TRP H2 H N N 503 TRP HA H N N 504 TRP HB2 H N N 505 TRP HB3 H N N 506 TRP HD1 H N N 507 TRP HE1 H N N 508 TRP HE3 H N N 509 TRP HZ2 H N N 510 TRP HZ3 H N N 511 TRP HH2 H N N 512 TRP HXT H N N 513 TYR N N N N 514 TYR CA C N S 515 TYR C C N N 516 TYR O O N N 517 TYR CB C N N 518 TYR CG C Y N 519 TYR CD1 C Y N 520 TYR CD2 C Y N 521 TYR CE1 C Y N 522 TYR CE2 C Y N 523 TYR CZ C Y N 524 TYR OH O N N 525 TYR OXT O N N 526 TYR H H N N 527 TYR H2 H N N 528 TYR HA H N N 529 TYR HB2 H N N 530 TYR HB3 H N N 531 TYR HD1 H N N 532 TYR HD2 H N N 533 TYR HE1 H N N 534 TYR HE2 H N N 535 TYR HH H N N 536 TYR HXT H N N 537 VAL N N N N 538 VAL CA C N S 539 VAL C C N N 540 VAL O O N N 541 VAL CB C N N 542 VAL CG1 C N N 543 VAL CG2 C N N 544 VAL OXT O N N 545 VAL H H N N 546 VAL H2 H N N 547 VAL HA H N N 548 VAL HB H N N 549 VAL HG11 H N N 550 VAL HG12 H N N 551 VAL HG13 H N N 552 VAL HG21 H N N 553 VAL HG22 H N N 554 VAL HG23 H N N 555 VAL HXT H N N 556 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 DA OP3 P sing N N 108 DA OP3 HOP3 sing N N 109 DA P OP1 doub N N 110 DA P OP2 sing N N 111 DA P "O5'" sing N N 112 DA OP2 HOP2 sing N N 113 DA "O5'" "C5'" sing N N 114 DA "C5'" "C4'" sing N N 115 DA "C5'" "H5'" sing N N 116 DA "C5'" "H5''" sing N N 117 DA "C4'" "O4'" sing N N 118 DA "C4'" "C3'" sing N N 119 DA "C4'" "H4'" sing N N 120 DA "O4'" "C1'" sing N N 121 DA "C3'" "O3'" sing N N 122 DA "C3'" "C2'" sing N N 123 DA "C3'" "H3'" sing N N 124 DA "O3'" "HO3'" sing N N 125 DA "C2'" "C1'" sing N N 126 DA "C2'" "H2'" sing N N 127 DA "C2'" "H2''" sing N N 128 DA "C1'" N9 sing N N 129 DA "C1'" "H1'" sing N N 130 DA N9 C8 sing Y N 131 DA N9 C4 sing Y N 132 DA C8 N7 doub Y N 133 DA C8 H8 sing N N 134 DA N7 C5 sing Y N 135 DA C5 C6 sing Y N 136 DA C5 C4 doub Y N 137 DA C6 N6 sing N N 138 DA C6 N1 doub Y N 139 DA N6 H61 sing N N 140 DA N6 H62 sing N N 141 DA N1 C2 sing Y N 142 DA C2 N3 doub Y N 143 DA C2 H2 sing N N 144 DA N3 C4 sing Y N 145 DC OP3 P sing N N 146 DC OP3 HOP3 sing N N 147 DC P OP1 doub N N 148 DC P OP2 sing N N 149 DC P "O5'" sing N N 150 DC OP2 HOP2 sing N N 151 DC "O5'" "C5'" sing N N 152 DC "C5'" "C4'" sing N N 153 DC "C5'" "H5'" sing N N 154 DC "C5'" "H5''" sing N N 155 DC "C4'" "O4'" sing N N 156 DC "C4'" "C3'" sing N N 157 DC "C4'" "H4'" sing N N 158 DC "O4'" "C1'" sing N N 159 DC "C3'" "O3'" sing N N 160 DC "C3'" "C2'" sing N N 161 DC "C3'" "H3'" sing N N 162 DC "O3'" "HO3'" sing N N 163 DC "C2'" "C1'" sing N N 164 DC "C2'" "H2'" sing N N 165 DC "C2'" "H2''" sing N N 166 DC "C1'" N1 sing N N 167 DC "C1'" "H1'" sing N N 168 DC N1 C2 sing N N 169 DC N1 C6 sing N N 170 DC C2 O2 doub N N 171 DC C2 N3 sing N N 172 DC N3 C4 doub N N 173 DC C4 N4 sing N N 174 DC C4 C5 sing N N 175 DC N4 H41 sing N N 176 DC N4 H42 sing N N 177 DC C5 C6 doub N N 178 DC C5 H5 sing N N 179 DC C6 H6 sing N N 180 DG OP3 P sing N N 181 DG OP3 HOP3 sing N N 182 DG P OP1 doub N N 183 DG P OP2 sing N N 184 DG P "O5'" sing N N 185 DG OP2 HOP2 sing N N 186 DG "O5'" "C5'" sing N N 187 DG "C5'" "C4'" sing N N 188 DG "C5'" "H5'" sing N N 189 DG "C5'" "H5''" sing N N 190 DG "C4'" "O4'" sing N N 191 DG "C4'" "C3'" sing N N 192 DG "C4'" "H4'" sing N N 193 DG "O4'" "C1'" sing N N 194 DG "C3'" "O3'" sing N N 195 DG "C3'" "C2'" sing N N 196 DG "C3'" "H3'" sing N N 197 DG "O3'" "HO3'" sing N N 198 DG "C2'" "C1'" sing N N 199 DG "C2'" "H2'" sing N N 200 DG "C2'" "H2''" sing N N 201 DG "C1'" N9 sing N N 202 DG "C1'" "H1'" sing N N 203 DG N9 C8 sing Y N 204 DG N9 C4 sing Y N 205 DG C8 N7 doub Y N 206 DG C8 H8 sing N N 207 DG N7 C5 sing Y N 208 DG C5 C6 sing N N 209 DG C5 C4 doub Y N 210 DG C6 O6 doub N N 211 DG C6 N1 sing N N 212 DG N1 C2 sing N N 213 DG N1 H1 sing N N 214 DG C2 N2 sing N N 215 DG C2 N3 doub N N 216 DG N2 H21 sing N N 217 DG N2 H22 sing N N 218 DG N3 C4 sing N N 219 DT OP3 P sing N N 220 DT OP3 HOP3 sing N N 221 DT P OP1 doub N N 222 DT P OP2 sing N N 223 DT P "O5'" sing N N 224 DT OP2 HOP2 sing N N 225 DT "O5'" "C5'" sing N N 226 DT "C5'" "C4'" sing N N 227 DT "C5'" "H5'" sing N N 228 DT "C5'" "H5''" sing N N 229 DT "C4'" "O4'" sing N N 230 DT "C4'" "C3'" sing N N 231 DT "C4'" "H4'" sing N N 232 DT "O4'" "C1'" sing N N 233 DT "C3'" "O3'" sing N N 234 DT "C3'" "C2'" sing N N 235 DT "C3'" "H3'" sing N N 236 DT "O3'" "HO3'" sing N N 237 DT "C2'" "C1'" sing N N 238 DT "C2'" "H2'" sing N N 239 DT "C2'" "H2''" sing N N 240 DT "C1'" N1 sing N N 241 DT "C1'" "H1'" sing N N 242 DT N1 C2 sing N N 243 DT N1 C6 sing N N 244 DT C2 O2 doub N N 245 DT C2 N3 sing N N 246 DT N3 C4 sing N N 247 DT N3 H3 sing N N 248 DT C4 O4 doub N N 249 DT C4 C5 sing N N 250 DT C5 C7 sing N N 251 DT C5 C6 doub N N 252 DT C7 H71 sing N N 253 DT C7 H72 sing N N 254 DT C7 H73 sing N N 255 DT C6 H6 sing N N 256 GLN N CA sing N N 257 GLN N H sing N N 258 GLN N H2 sing N N 259 GLN CA C sing N N 260 GLN CA CB sing N N 261 GLN CA HA sing N N 262 GLN C O doub N N 263 GLN C OXT sing N N 264 GLN CB CG sing N N 265 GLN CB HB2 sing N N 266 GLN CB HB3 sing N N 267 GLN CG CD sing N N 268 GLN CG HG2 sing N N 269 GLN CG HG3 sing N N 270 GLN CD OE1 doub N N 271 GLN CD NE2 sing N N 272 GLN NE2 HE21 sing N N 273 GLN NE2 HE22 sing N N 274 GLN OXT HXT sing N N 275 GLU N CA sing N N 276 GLU N H sing N N 277 GLU N H2 sing N N 278 GLU CA C sing N N 279 GLU CA CB sing N N 280 GLU CA HA sing N N 281 GLU C O doub N N 282 GLU C OXT sing N N 283 GLU CB CG sing N N 284 GLU CB HB2 sing N N 285 GLU CB HB3 sing N N 286 GLU CG CD sing N N 287 GLU CG HG2 sing N N 288 GLU CG HG3 sing N N 289 GLU CD OE1 doub N N 290 GLU CD OE2 sing N N 291 GLU OE2 HE2 sing N N 292 GLU OXT HXT sing N N 293 GLY N CA sing N N 294 GLY N H sing N N 295 GLY N H2 sing N N 296 GLY CA C sing N N 297 GLY CA HA2 sing N N 298 GLY CA HA3 sing N N 299 GLY C O doub N N 300 GLY C OXT sing N N 301 GLY OXT HXT sing N N 302 HIS N CA sing N N 303 HIS N H sing N N 304 HIS N H2 sing N N 305 HIS CA C sing N N 306 HIS CA CB sing N N 307 HIS CA HA sing N N 308 HIS C O doub N N 309 HIS C OXT sing N N 310 HIS CB CG sing N N 311 HIS CB HB2 sing N N 312 HIS CB HB3 sing N N 313 HIS CG ND1 sing Y N 314 HIS CG CD2 doub Y N 315 HIS ND1 CE1 doub Y N 316 HIS ND1 HD1 sing N N 317 HIS CD2 NE2 sing Y N 318 HIS CD2 HD2 sing N N 319 HIS CE1 NE2 sing Y N 320 HIS CE1 HE1 sing N N 321 HIS NE2 HE2 sing N N 322 HIS OXT HXT sing N N 323 HOH O H1 sing N N 324 HOH O H2 sing N N 325 ILE N CA sing N N 326 ILE N H sing N N 327 ILE N H2 sing N N 328 ILE CA C sing N N 329 ILE CA CB sing N N 330 ILE CA HA sing N N 331 ILE C O doub N N 332 ILE C OXT sing N N 333 ILE CB CG1 sing N N 334 ILE CB CG2 sing N N 335 ILE CB HB sing N N 336 ILE CG1 CD1 sing N N 337 ILE CG1 HG12 sing N N 338 ILE CG1 HG13 sing N N 339 ILE CG2 HG21 sing N N 340 ILE CG2 HG22 sing N N 341 ILE CG2 HG23 sing N N 342 ILE CD1 HD11 sing N N 343 ILE CD1 HD12 sing N N 344 ILE CD1 HD13 sing N N 345 ILE OXT HXT sing N N 346 LEU N CA sing N N 347 LEU N H sing N N 348 LEU N H2 sing N N 349 LEU CA C sing N N 350 LEU CA CB sing N N 351 LEU CA HA sing N N 352 LEU C O doub N N 353 LEU C OXT sing N N 354 LEU CB CG sing N N 355 LEU CB HB2 sing N N 356 LEU CB HB3 sing N N 357 LEU CG CD1 sing N N 358 LEU CG CD2 sing N N 359 LEU CG HG sing N N 360 LEU CD1 HD11 sing N N 361 LEU CD1 HD12 sing N N 362 LEU CD1 HD13 sing N N 363 LEU CD2 HD21 sing N N 364 LEU CD2 HD22 sing N N 365 LEU CD2 HD23 sing N N 366 LEU OXT HXT sing N N 367 LYS N CA sing N N 368 LYS N H sing N N 369 LYS N H2 sing N N 370 LYS CA C sing N N 371 LYS CA CB sing N N 372 LYS CA HA sing N N 373 LYS C O doub N N 374 LYS C OXT sing N N 375 LYS CB CG sing N N 376 LYS CB HB2 sing N N 377 LYS CB HB3 sing N N 378 LYS CG CD sing N N 379 LYS CG HG2 sing N N 380 LYS CG HG3 sing N N 381 LYS CD CE sing N N 382 LYS CD HD2 sing N N 383 LYS CD HD3 sing N N 384 LYS CE NZ sing N N 385 LYS CE HE2 sing N N 386 LYS CE HE3 sing N N 387 LYS NZ HZ1 sing N N 388 LYS NZ HZ2 sing N N 389 LYS NZ HZ3 sing N N 390 LYS OXT HXT sing N N 391 MET N CA sing N N 392 MET N H sing N N 393 MET N H2 sing N N 394 MET CA C sing N N 395 MET CA CB sing N N 396 MET CA HA sing N N 397 MET C O doub N N 398 MET C OXT sing N N 399 MET CB CG sing N N 400 MET CB HB2 sing N N 401 MET CB HB3 sing N N 402 MET CG SD sing N N 403 MET CG HG2 sing N N 404 MET CG HG3 sing N N 405 MET SD CE sing N N 406 MET CE HE1 sing N N 407 MET CE HE2 sing N N 408 MET CE HE3 sing N N 409 MET OXT HXT sing N N 410 PHE N CA sing N N 411 PHE N H sing N N 412 PHE N H2 sing N N 413 PHE CA C sing N N 414 PHE CA CB sing N N 415 PHE CA HA sing N N 416 PHE C O doub N N 417 PHE C OXT sing N N 418 PHE CB CG sing N N 419 PHE CB HB2 sing N N 420 PHE CB HB3 sing N N 421 PHE CG CD1 doub Y N 422 PHE CG CD2 sing Y N 423 PHE CD1 CE1 sing Y N 424 PHE CD1 HD1 sing N N 425 PHE CD2 CE2 doub Y N 426 PHE CD2 HD2 sing N N 427 PHE CE1 CZ doub Y N 428 PHE CE1 HE1 sing N N 429 PHE CE2 CZ sing Y N 430 PHE CE2 HE2 sing N N 431 PHE CZ HZ sing N N 432 PHE OXT HXT sing N N 433 PRO N CA sing N N 434 PRO N CD sing N N 435 PRO N H sing N N 436 PRO CA C sing N N 437 PRO CA CB sing N N 438 PRO CA HA sing N N 439 PRO C O doub N N 440 PRO C OXT sing N N 441 PRO CB CG sing N N 442 PRO CB HB2 sing N N 443 PRO CB HB3 sing N N 444 PRO CG CD sing N N 445 PRO CG HG2 sing N N 446 PRO CG HG3 sing N N 447 PRO CD HD2 sing N N 448 PRO CD HD3 sing N N 449 PRO OXT HXT sing N N 450 SER N CA sing N N 451 SER N H sing N N 452 SER N H2 sing N N 453 SER CA C sing N N 454 SER CA CB sing N N 455 SER CA HA sing N N 456 SER C O doub N N 457 SER C OXT sing N N 458 SER CB OG sing N N 459 SER CB HB2 sing N N 460 SER CB HB3 sing N N 461 SER OG HG sing N N 462 SER OXT HXT sing N N 463 THR N CA sing N N 464 THR N H sing N N 465 THR N H2 sing N N 466 THR CA C sing N N 467 THR CA CB sing N N 468 THR CA HA sing N N 469 THR C O doub N N 470 THR C OXT sing N N 471 THR CB OG1 sing N N 472 THR CB CG2 sing N N 473 THR CB HB sing N N 474 THR OG1 HG1 sing N N 475 THR CG2 HG21 sing N N 476 THR CG2 HG22 sing N N 477 THR CG2 HG23 sing N N 478 THR OXT HXT sing N N 479 TRP N CA sing N N 480 TRP N H sing N N 481 TRP N H2 sing N N 482 TRP CA C sing N N 483 TRP CA CB sing N N 484 TRP CA HA sing N N 485 TRP C O doub N N 486 TRP C OXT sing N N 487 TRP CB CG sing N N 488 TRP CB HB2 sing N N 489 TRP CB HB3 sing N N 490 TRP CG CD1 doub Y N 491 TRP CG CD2 sing Y N 492 TRP CD1 NE1 sing Y N 493 TRP CD1 HD1 sing N N 494 TRP CD2 CE2 doub Y N 495 TRP CD2 CE3 sing Y N 496 TRP NE1 CE2 sing Y N 497 TRP NE1 HE1 sing N N 498 TRP CE2 CZ2 sing Y N 499 TRP CE3 CZ3 doub Y N 500 TRP CE3 HE3 sing N N 501 TRP CZ2 CH2 doub Y N 502 TRP CZ2 HZ2 sing N N 503 TRP CZ3 CH2 sing Y N 504 TRP CZ3 HZ3 sing N N 505 TRP CH2 HH2 sing N N 506 TRP OXT HXT sing N N 507 TYR N CA sing N N 508 TYR N H sing N N 509 TYR N H2 sing N N 510 TYR CA C sing N N 511 TYR CA CB sing N N 512 TYR CA HA sing N N 513 TYR C O doub N N 514 TYR C OXT sing N N 515 TYR CB CG sing N N 516 TYR CB HB2 sing N N 517 TYR CB HB3 sing N N 518 TYR CG CD1 doub Y N 519 TYR CG CD2 sing Y N 520 TYR CD1 CE1 sing Y N 521 TYR CD1 HD1 sing N N 522 TYR CD2 CE2 doub Y N 523 TYR CD2 HD2 sing N N 524 TYR CE1 CZ doub Y N 525 TYR CE1 HE1 sing N N 526 TYR CE2 CZ sing Y N 527 TYR CE2 HE2 sing N N 528 TYR CZ OH sing N N 529 TYR OH HH sing N N 530 TYR OXT HXT sing N N 531 VAL N CA sing N N 532 VAL N H sing N N 533 VAL N H2 sing N N 534 VAL CA C sing N N 535 VAL CA CB sing N N 536 VAL CA HA sing N N 537 VAL C O doub N N 538 VAL C OXT sing N N 539 VAL CB CG1 sing N N 540 VAL CB CG2 sing N N 541 VAL CB HB sing N N 542 VAL CG1 HG11 sing N N 543 VAL CG1 HG12 sing N N 544 VAL CG1 HG13 sing N N 545 VAL CG2 HG21 sing N N 546 VAL CG2 HG22 sing N N 547 VAL CG2 HG23 sing N N 548 VAL OXT HXT sing N N 549 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3Q0F 'double helix' 3Q0F 'b-form double helix' 3Q0F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 D DG 10 1_555 -0.384 -0.230 1.057 -30.085 -2.958 -4.122 1 B_DC1:DG10_C B 1 ? C 10 ? 19 1 1 C DT 2 1_555 D DA 9 1_555 -1.823 -0.333 1.165 -21.554 -5.691 -6.585 2 B_DT2:DA9_C B 2 ? C 9 ? 20 1 1 C DG 3 1_555 D DC 8 1_555 -1.778 -0.703 0.533 -2.489 -5.672 -18.923 3 B_DG3:DC8_C B 3 ? C 8 ? ? 1 1 C DA 4 1_555 D DT 7 1_555 0.830 -0.165 0.845 4.948 -9.470 -8.754 4 B_DA4:DT7_C B 4 ? C 7 ? 20 1 1 C DG 5 1_555 D DC 6 1_555 0.163 -0.125 0.639 8.083 -10.459 -2.231 5 B_DG5:DC6_C B 5 ? C 6 ? 19 1 1 C DA 7 1_555 D DT 4 1_555 -0.181 -0.425 -0.120 -15.560 4.228 -5.331 6 B_DA7:DT4_C B 7 ? C 4 ? 20 1 1 C DG 8 1_555 D DC 3 1_555 -0.881 -0.045 -0.336 -7.710 3.727 7.515 7 B_DG8:DC3_C B 8 ? C 3 ? 19 1 1 C DT 9 1_555 D DA 2 1_555 -0.197 -0.227 -0.359 12.243 6.394 -5.032 8 B_DT9:DA2_C B 9 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 D DG 10 1_555 C DT 2 1_555 D DA 9 1_555 -0.797 -0.463 3.079 -0.991 -7.684 32.327 0.428 1.234 3.126 -13.559 1.750 33.218 1 BB_DC1DT2:DA9DG10_CC B 1 ? C 10 ? B 2 ? C 9 ? 1 C DT 2 1_555 D DA 9 1_555 C DG 3 1_555 D DC 8 1_555 -0.156 1.093 2.913 7.069 -3.625 32.965 2.383 1.255 2.691 -6.275 -12.236 33.883 2 BB_DT2DG3:DC8DA9_CC B 2 ? C 9 ? B 3 ? C 8 ? 1 C DG 3 1_555 D DC 8 1_555 C DA 4 1_555 D DT 7 1_555 -0.315 1.351 3.353 -5.349 -8.927 53.642 2.013 0.020 3.125 -9.788 5.865 54.568 3 BB_DG3DA4:DT7DC8_CC B 3 ? C 8 ? B 4 ? C 7 ? 1 C DA 4 1_555 D DT 7 1_555 C DG 5 1_555 D DC 6 1_555 1.210 -0.326 3.014 5.794 1.073 25.132 -1.017 -1.155 3.191 2.424 -13.087 25.803 4 BB_DA4DG5:DC6DT7_CC B 4 ? C 7 ? B 5 ? C 6 ? 1 C DA 7 1_555 D DT 4 1_555 C DG 8 1_555 D DC 3 1_555 1.084 -0.118 3.159 1.347 9.672 29.298 -2.047 -1.784 3.014 18.486 -2.574 30.848 5 BB_DA7DG8:DC3DT4_CC B 7 ? C 4 ? B 8 ? C 3 ? 1 C DG 8 1_555 D DC 3 1_555 C DT 9 1_555 D DA 2 1_555 -0.238 -0.393 2.910 2.511 1.831 31.045 -1.039 0.865 2.855 3.410 -4.677 31.196 6 BB_DG8DT9:DA2DC3_CC B 8 ? C 3 ? B 9 ? C 2 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'SRA molecule from the SUVH5 SRA-fully methylated CG DNA crystallized in P42212 space group' # _atom_sites.entry_id 3Q0F _atom_sites.fract_transf_matrix[1][1] 0.009712 _atom_sites.fract_transf_matrix[1][2] 0.005607 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011214 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005865 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_