HEADER HYDROLASE/RNA 17-DEC-10 3Q1Q TITLE STRUCTURE OF A BACTERIAL RIBONUCLEASE P HOLOENZYME IN COMPLEX WITH TITLE 2 TRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNASE P RNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBONUCLEASE P PROTEIN COMPONENT; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: RNASE P PROTEIN, RNASEP PROTEIN, PROTEIN C5; COMPND 9 EC: 3.1.26.5; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TRNA (PHE); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE RNA WAS PREPARED BY IN VITRO TRANSCRIPTION; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 6 ORGANISM_TAXID: 2336; SOURCE 7 GENE: RNPA, RNPA OR TM1463, RNPB, TM_1463; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX4T-2; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: THE RNA WAS PREPARED BY IN VITRO TRANSCRIPTION KEYWDS RNASE P, RIBOZYME, RIBONUCLEASE P, TRNA, PRE-TRNA, TETRALOOP- KEYWDS 2 RECEPTOR, RIBOSE ZIPPER, A-MINOR INTERACTION, BASE STACKING, KEYWDS 3 INTERMOLECULAR BASE PAIRS, INTERMOLECULAR RNA-RNA CONTACTS, RNP, KEYWDS 4 RIBONUCLEOPROTEIN COMPLEX, ENZYME-PRODUCT COMPLEX, METALLOENZYME, KEYWDS 5 RNA-METAL INTERACTIONS, SHAPE COMPLEMENTARITY, HYDROLASE-RNA KEYWDS 6 COMPLEX, ENDONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR N.J.REITER,A.OSTERMAN,A.TORRES-LARIOS,K.K.SWINGER,T.PAN,A.MONDRAGON REVDAT 2 13-SEP-23 3Q1Q 1 REMARK SEQADV LINK REVDAT 1 09-MAR-11 3Q1Q 0 SPRSDE 09-MAR-11 3Q1Q 3OK7 JRNL AUTH N.J.REITER,A.OSTERMAN,A.TORRES-LARIOS,K.K.SWINGER,T.PAN, JRNL AUTH 2 A.MONDRAGON JRNL TITL STRUCTURE OF A BACTERIAL RIBONUCLEASE P HOLOENZYME IN JRNL TITL 2 COMPLEX WITH TRNA. JRNL REF NATURE V. 468 784 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 21076397 JRNL DOI 10.1038/NATURE09516 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1368 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 585 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2489 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 558 REMARK 3 BIN R VALUE (WORKING SET) : 0.2497 REMARK 3 BIN FREE R VALUE : 0.2334 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 27 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 973 REMARK 3 NUCLEIC ACID ATOMS : 9168 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 129.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.47020 REMARK 3 B22 (A**2) : -23.47020 REMARK 3 B33 (A**2) : 46.94040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.870 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.877 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.846 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 11244 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 17300 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 5527 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 20 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 566 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 11244 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND LAUE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27116 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : 0.43200 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: 2A2E, 2A64, 1NZ0, 1EHZ REMARK 200 REMARK 200 REMARK: DUE TO THE ANISOTROPIC NATURE OF THE DIFFRACTION, THE DATA REMARK 200 WERE TREATED IN TWO DIFFERENT WAYS: 1) BY APPLYING AN REMARK 200 ANISOTROPIC CORRECTION TO THE DATA (ANISOTROPIC), AND 2) WITHOUT REMARK 200 ANY ANISOTROPY CORRECTION (ISOTROPIC). WHILE COMPLETENESS OF THE REMARK 200 HIGHEST RESOLUTION SHELL MAY APPEAR OF POOR QUALITY IN THE REMARK 200 ANISOTROPIC CASE, THE DATA COLLECTION STATISTICS AND RWORK AND REMARK 200 RFREE REFINEMENT STATISTICS WERE ACTUALLY BETTER FOR THE CARVED REMARK 200 (ANISOTROPIC) DATA SET THAN FOR THE ISOTROPIC CASE. FOR THIS REMARK 200 REASON, THE REPORTED 3Q1Q STRUCTURE AND HEADER REMARKS REFLECT REMARK 200 THE CARVED, ANISOTROPICALLY CORRECTED DATA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M LITHIUM SULFATE, 0.05M SODIUM REMARK 280 CACODYLATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.66333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.32667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.32667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.66333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PHE A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 39 O4' C2' O2' C1' N1 C2 O2 REMARK 470 U B 39 N3 C4 O4 C5 C6 REMARK 470 C B 250 O4' C2' O2' C1' N1 C2 O2 REMARK 470 C B 250 N3 C4 N4 C5 C6 REMARK 470 C B 314 O4' C2' O2' C1' N1 C2 O2 REMARK 470 C B 314 N3 C4 N4 C5 C6 REMARK 470 A B 315 O4' C2' O2' C1' N9 C8 N7 REMARK 470 A B 315 C5 C6 N6 N1 C2 N3 C4 REMARK 470 C B 316 O4' C2' O2' C1' N1 C2 O2 REMARK 470 C B 316 N3 C4 N4 C5 C6 REMARK 470 G B 317 O4' C2' O2' C1' N9 C8 N7 REMARK 470 G B 317 C5 C6 O6 N1 C2 N2 N3 REMARK 470 G B 317 C4 REMARK 470 U C 16 O4' C2' O2' C1' N1 C2 O2 REMARK 470 U C 16 N3 C4 O4 C5 C6 REMARK 470 U C 17 O4' C2' O2' C1' N1 C2 O2 REMARK 470 U C 17 N3 C4 O4 C5 C6 REMARK 470 U C 20 O4' C2' O2' C1' N1 C2 O2 REMARK 470 U C 20 N3 C4 O4 C5 C6 REMARK 470 U C 57 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U C 57 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G C 1 P G C 1 OP3 -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 7 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 G B 24 N1 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 U B 40 N1 - C2 - O2 ANGL. DEV. = 4.6 DEGREES REMARK 500 U B 40 N3 - C2 - O2 ANGL. DEV. = -6.4 DEGREES REMARK 500 U B 61 N3 - C4 - O4 ANGL. DEV. = 5.2 DEGREES REMARK 500 U B 61 C5 - C4 - O4 ANGL. DEV. = -6.4 DEGREES REMARK 500 G B 133 N1 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 G B 134 N1 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 U B 141 C5 - C4 - O4 ANGL. DEV. = -4.9 DEGREES REMARK 500 U B 142 N1 - C2 - N3 ANGL. DEV. = 4.0 DEGREES REMARK 500 U B 142 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 U B 142 N3 - C2 - O2 ANGL. DEV. = -5.2 DEGREES REMARK 500 U B 183 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 U B 183 N3 - C4 - O4 ANGL. DEV. = 4.2 DEGREES REMARK 500 U B 183 C5 - C4 - O4 ANGL. DEV. = -4.9 DEGREES REMARK 500 C B 200 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 U B 216 N3 - C4 - O4 ANGL. DEV. = 5.0 DEGREES REMARK 500 U B 216 C5 - C4 - O4 ANGL. DEV. = -6.6 DEGREES REMARK 500 U B 238 C2 - N1 - C1' ANGL. DEV. = 7.4 DEGREES REMARK 500 C B 249 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 C B 252 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 G B 264 N1 - C6 - O6 ANGL. DEV. = -4.4 DEGREES REMARK 500 U B 265 C2 - N3 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 U B 265 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 A B 308 C6 - N1 - C2 ANGL. DEV. = 3.7 DEGREES REMARK 500 A C 83 N3 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 A C 83 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 A C 83 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 C C 84 N1 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 C C 84 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G B 311 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 50 OP1 REMARK 620 2 A B 50 O3' 128.1 REMARK 620 3 A B 50 OP2 63.8 79.8 REMARK 620 4 U B 52 O4 121.3 77.0 73.2 REMARK 620 5 G C 1 OP1 77.3 113.6 136.8 148.0 REMARK 620 6 G C 1 OP3 118.1 104.2 169.8 98.4 50.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 83 OP1 REMARK 620 2 C C 84 OP2 96.2 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A2E RELATED DB: PDB REMARK 900 RELATED ID: 2A64 RELATED DB: PDB REMARK 900 RELATED ID: 1U9S RELATED DB: PDB REMARK 900 RELATED ID: 1NBS RELATED DB: PDB REMARK 900 RELATED ID: 1NZ0 RELATED DB: PDB REMARK 900 RELATED ID: 1EHZ RELATED DB: PDB REMARK 900 RELATED ID: 3Q1R RELATED DB: PDB DBREF 3Q1Q A 3 117 UNP Q9X1H4 RNPA_THEMA 3 117 DBREF 3Q1Q B 1 347 PDB 3Q1Q 3Q1Q 1 347 DBREF 3Q1Q C 1 86 PDB 3Q1Q 3Q1Q 1 86 SEQADV 3Q1Q GLY A 0 UNP Q9X1H4 EXPRESSION TAG SEQADV 3Q1Q SER A 1 UNP Q9X1H4 EXPRESSION TAG SEQADV 3Q1Q THR A 2 UNP Q9X1H4 EXPRESSION TAG SEQRES 1 B 347 G G A G A G G A G C A G G SEQRES 2 B 347 C G G U C G C G G G G G C SEQRES 3 B 347 G C A C A C C U G C G C U SEQRES 4 B 347 U C C C G A G G A A A G U SEQRES 5 B 347 C C G G A C U C U G G A G SEQRES 6 B 347 C G G G G U G C C G G G U SEQRES 7 B 347 A A C G C C C G G G A G G SEQRES 8 B 347 G G U G A C C C U C G G A SEQRES 9 B 347 C A G G G C C A U A G A G SEQRES 10 B 347 A A G A A G A C C G C C C SEQRES 11 B 347 G G G G G G A A A C U U C SEQRES 12 B 347 C G G G C A A G G G U G G SEQRES 13 B 347 A A C G G U G G G G U A A SEQRES 14 B 347 G A G C C C A C C A G C G SEQRES 15 B 347 U C G G G G C A A C C C G SEQRES 16 B 347 G C G G C U U G G C A A C SEQRES 17 B 347 C C C C A C C U G G A G C SEQRES 18 B 347 A A G G C C A A G C A G G SEQRES 19 B 347 G G G U U G G G U C G C U SEQRES 20 B 347 C C C C C U A U U C C C C SEQRES 21 B 347 C G G G U U G G C C G C U SEQRES 22 B 347 U G A G G U G U G C G G U SEQRES 23 B 347 A A C G C A C A C C C C A SEQRES 24 B 347 G A U U G A U G A C C G C SEQRES 25 B 347 C C A C G A C A G A A U C SEQRES 26 B 347 C G G C U U A U G C U C C SEQRES 27 B 347 U C U C C C G U G SEQRES 1 A 118 GLY SER THR GLU SER PHE THR ARG ARG GLU ARG LEU ARG SEQRES 2 A 118 LEU ARG ARG ASP PHE LEU LEU ILE PHE LYS GLU GLY LYS SEQRES 3 A 118 SER LEU GLN ASN GLU TYR PHE VAL VAL LEU PHE ARG LYS SEQRES 4 A 118 ASN GLY LEU ASP TYR SER ARG LEU GLY ILE VAL VAL LYS SEQRES 5 A 118 ARG LYS PHE GLY LYS ALA THR ARG ARG ASN LYS LEU LYS SEQRES 6 A 118 ARG TRP VAL ARG GLU ILE PHE ARG ARG ASN LYS GLY VAL SEQRES 7 A 118 ILE PRO LYS GLY PHE ASP ILE VAL VAL ILE PRO ARG LYS SEQRES 8 A 118 LYS LEU SER GLU GLU PHE GLU ARG VAL ASP PHE TRP THR SEQRES 9 A 118 VAL ARG GLU LYS LEU LEU ASN LEU LEU LYS ARG ILE GLU SEQRES 10 A 118 GLY SEQRES 1 C 86 G G C C A G G U A G C U C SEQRES 2 C 86 A G U U G G U A G A G C A SEQRES 3 C 86 C U G G A U A U G G G C A SEQRES 4 C 86 C C C C C U A A G U C C A SEQRES 5 C 86 G G U G U C G G C G G U U SEQRES 6 C 86 C G A U U C C G C C C C U SEQRES 7 C 86 G G C C A C C A HET MG B 902 1 HET MG B 903 1 HET MG B 904 1 HET PO4 A 118 5 HET PO4 A 119 5 HET MG C 901 1 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 4 MG 4(MG 2+) FORMUL 7 PO4 2(O4 P 3-) HELIX 1 1 ARG A 12 GLY A 24 1 13 HELIX 2 2 LYS A 51 PHE A 54 5 4 HELIX 3 3 ALA A 57 LYS A 75 1 19 HELIX 4 4 LYS A 91 PHE A 96 1 6 HELIX 5 5 ASP A 100 LYS A 113 1 14 SHEET 1 A 4 LYS A 25 GLN A 28 0 SHEET 2 A 4 PHE A 32 LYS A 38 -1 O VAL A 34 N LEU A 27 SHEET 3 A 4 PHE A 82 PRO A 88 -1 O ASP A 83 N ARG A 37 SHEET 4 A 4 ARG A 45 ILE A 48 1 N ARG A 45 O ILE A 84 LINK OP1 A B 50 MG MG B 903 1555 1555 2.08 LINK O3' A B 50 MG MG B 903 1555 1555 2.43 LINK OP2 A B 50 MG MG B 903 1555 1555 2.65 LINK O4 U B 52 MG MG B 903 1555 1555 2.08 LINK OP2 A B 150 MG MG B 902 1555 1555 2.60 LINK MG MG B 903 OP1 G C 1 1555 1555 2.00 LINK MG MG B 903 OP3 G C 1 1555 1555 2.93 LINK OP1 A C 83 MG MG C 901 1555 1555 1.95 LINK OP2 C C 84 MG MG C 901 1555 1555 2.78 CISPEP 1 GLU A 116 GLY A 117 0 -2.84 SITE 1 AC1 2 A C 83 C C 84 SITE 1 AC2 2 A B 150 G B 151 SITE 1 AC3 4 A B 50 G B 51 U B 52 G C 1 SITE 1 AC4 2 G B 1 G B 347 SITE 1 AC5 2 ARG A 52 G C 1 SITE 1 AC6 2 ARG A 89 LYS A 90 CRYST1 169.290 169.290 184.990 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005907 0.003410 0.000000 0.00000 SCALE2 0.000000 0.006821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005406 0.00000