HEADER TRANSFERASE/DNA/RNA 19-DEC-10 3Q24 TITLE X-RAY CRYSTAL STRUCTURE OF THE N4 MINI-VRNAP AND P2_7A PROMOTER TITLE 2 TRANSCRIPTION INITIATION COMPLEX WITH PPPGPG AND PYROPHOSPHATE: TITLE 3 PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP* COMPND 9 AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE N4; SOURCE 4 ORGANISM_TAXID: 10752; SOURCE 5 GENE: GP50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKMK56; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, TWO-METAL CATALYSIS, DE NOVO TRANSCRIPTION KEYWDS 2 INITIATION, NUCLEOTIDYLTRANSFERASE, INITIATION COMPLEX, DNA-HAIRPIN, KEYWDS 3 VIRION RNA POLYMERASE, TRANSFERASE-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.GLEGHORN,K.S.MURAKAMI REVDAT 5 21-FEB-24 3Q24 1 REMARK SEQADV REVDAT 4 17-JUL-19 3Q24 1 REMARK LINK REVDAT 3 16-MAR-11 3Q24 1 JRNL REVDAT 2 02-MAR-11 3Q24 1 JRNL REVDAT 1 16-FEB-11 3Q24 0 JRNL AUTH M.L.GLEGHORN,E.K.DAVYDOVA,R.BASU,L.B.ROTHMAN-DENES, JRNL AUTH 2 K.S.MURAKAMI JRNL TITL X-RAY CRYSTAL STRUCTURES ELUCIDATE THE NUCLEOTIDYL TRANSFER JRNL TITL 2 REACTION OF TRANSCRIPT INITIATION USING TWO NUCLEOTIDES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 3566 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21321236 JRNL DOI 10.1073/PNAS.1016691108 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 233362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11698 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 799 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 16897 REMARK 3 NUCLEIC ACID ATOMS : 881 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 2399 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 18231 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 24862 ; 1.096 ; 2.042 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 2187 ; 5.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 769 ;38.062 ;25.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 3119 ;14.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 82 ;16.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2846 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13301 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 9159 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 12654 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 2129 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 11217 ; 0.726 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 17537 ; 0.940 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 8174 ; 1.401 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 7325 ; 2.152 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.959997 REMARK 200 MONOCHROMATOR : SILICON(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 233493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.21 M DIBASIC REMARK 280 AMMONIUM CITRATE, 0.09 M AMMONIUM DIHYDROGEN MONOPHOSPHATE, 25% REMARK 280 (DROP) 21.5-22% (RESERVOIR) PEG 3350, PH 8.0, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.72950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.50450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 138.50450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.72950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 GLU A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 LYS A 1101 REMARK 465 VAL A 1102 REMARK 465 ALA A 1103 REMARK 465 LYS A 1104 REMARK 465 ALA A 1105 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 GLU B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 LYS B 1099 REMARK 465 GLN B 1100 REMARK 465 LYS B 1101 REMARK 465 VAL B 1102 REMARK 465 ALA B 1103 REMARK 465 LYS B 1104 REMARK 465 ALA B 1105 REMARK 465 DT C -10 REMARK 465 DG C -9 REMARK 465 DC C -8 REMARK 465 DC C -7 REMARK 465 DT C -6 REMARK 465 DC C -5 REMARK 465 DC C -4 REMARK 465 DC C -3 REMARK 465 DA C -2 REMARK 465 DG C -1 REMARK 465 DG C 0 REMARK 465 DC C 1 REMARK 465 DA C 2 REMARK 465 DT C 24 REMARK 465 DC C 25 REMARK 465 DT D -10 REMARK 465 DG D -9 REMARK 465 DC D -8 REMARK 465 DC D -7 REMARK 465 DT D -6 REMARK 465 DC D -5 REMARK 465 DC D -4 REMARK 465 DC D -3 REMARK 465 DA D -2 REMARK 465 DG D -1 REMARK 465 DG D 0 REMARK 465 DC D 1 REMARK 465 DT D 24 REMARK 465 DC D 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA D 2 P OP1 OP2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 850 O HOH B 2876 2.02 REMARK 500 NH1 ARG A 603 OD1 ASN A 608 2.07 REMARK 500 NH1 ARG B 603 OD1 ASN B 608 2.10 REMARK 500 ND1 HIS B 476 O4 2HP B 1106 2.17 REMARK 500 O3' GTP A 1106 OP1 G A 1107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 22 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC D 22 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 -165.77 -106.41 REMARK 500 THR A 144 -159.60 -143.34 REMARK 500 ASP A 174 -166.09 -105.32 REMARK 500 ILE A 262 -67.67 -95.37 REMARK 500 PHE A 287 75.82 -155.86 REMARK 500 ARG A 318 18.22 56.29 REMARK 500 GLU A 370 6.93 -173.64 REMARK 500 THR A 562 56.24 39.66 REMARK 500 ASP A 607 106.43 -163.75 REMARK 500 ASN A 713 30.52 -92.62 REMARK 500 PHE A 793 -53.70 -139.16 REMARK 500 PHE A 853 -136.89 -101.34 REMARK 500 SER A 877 -5.75 -144.13 REMARK 500 PHE A 950 -66.52 76.45 REMARK 500 ASN A 978 78.16 -152.52 REMARK 500 ASP A1015 0.14 -67.78 REMARK 500 GLU A1018 -86.50 1.72 REMARK 500 ALA A1062 -51.12 148.65 REMARK 500 THR B 144 -155.78 -137.73 REMARK 500 ILE B 262 -73.66 -79.87 REMARK 500 PHE B 287 73.40 -157.74 REMARK 500 LYS B 302 161.28 179.67 REMARK 500 ALA B 549 58.59 -146.92 REMARK 500 THR B 562 55.65 39.70 REMARK 500 ASP B 607 106.87 -166.69 REMARK 500 ASN B 659 -33.91 -34.36 REMARK 500 SER B 715 -72.61 -55.05 REMARK 500 ALA B 716 -75.55 130.89 REMARK 500 LYS B 723 -81.69 0.67 REMARK 500 ALA B 725 -161.18 -160.20 REMARK 500 SER B 727 -169.52 70.36 REMARK 500 THR B 764 44.49 -152.35 REMARK 500 LYS B 767 -155.42 -68.31 REMARK 500 LYS B 769 169.41 45.43 REMARK 500 PHE B 793 -51.90 -133.60 REMARK 500 PHE B 853 -154.54 61.13 REMARK 500 PHE B 950 -65.56 77.76 REMARK 500 ASN B 978 76.69 -157.60 REMARK 500 ALA B1062 -52.78 149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 727 GLU B 728 -147.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HP A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HP B 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 1107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q0A RELATED DB: PDB REMARK 900 RELATED ID: 3Q22 RELATED DB: PDB REMARK 900 RELATED ID: 3Q23 RELATED DB: PDB DBREF 3Q24 A 1 1105 UNP Q859P9 Q859P9_BPN4 998 2102 DBREF 3Q24 B 1 1105 UNP Q859P9 Q859P9_BPN4 998 2102 DBREF 3Q24 C -10 25 PDB 3Q24 3Q24 -10 25 DBREF 3Q24 D -10 25 PDB 3Q24 3Q24 -10 25 SEQADV 3Q24 MET A -11 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 GLY A -10 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 GLY A -9 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 SER A -8 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -7 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -6 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -5 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -4 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -3 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS A -2 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 ARG A -1 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 SER A 0 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 MET B -11 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 GLY B -10 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 GLY B -9 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 SER B -8 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -7 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -6 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -5 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -4 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -3 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 HIS B -2 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 ARG B -1 UNP Q859P9 EXPRESSION TAG SEQADV 3Q24 SER B 0 UNP Q859P9 EXPRESSION TAG SEQRES 1 A 1117 MET GLY GLY SER HIS HIS HIS HIS HIS HIS ARG SER GLU SEQRES 2 A 1117 SER THR VAL THR GLU GLU LEU LYS GLU GLY ILE ASP ALA SEQRES 3 A 1117 VAL TYR PRO SER LEU VAL GLY THR ALA ASP SER LYS ALA SEQRES 4 A 1117 GLU GLY ILE LYS ASN TYR PHE LYS LEU SER PHE THR LEU SEQRES 5 A 1117 PRO GLU GLU GLN LYS SER ARG THR VAL GLY SER GLU ALA SEQRES 6 A 1117 PRO LEU LYS ASP VAL ALA GLN ALA LEU SER SER ARG ALA SEQRES 7 A 1117 ARG TYR GLU LEU PHE THR GLU LYS GLU THR ALA ASN PRO SEQRES 8 A 1117 ALA PHE ASN GLY GLU VAL ILE LYS ARG TYR LYS GLU LEU SEQRES 9 A 1117 MET GLU HIS GLY GLU GLY ILE ALA ASP ILE LEU ARG SER SEQRES 10 A 1117 ARG LEU ALA LYS PHE LEU ASN THR LYS ASP VAL GLY LYS SEQRES 11 A 1117 ARG PHE ALA GLN GLY THR GLU ALA ASN ARG TRP VAL GLY SEQRES 12 A 1117 GLY LYS LEU LEU ASN ILE VAL GLU GLN ASP GLY ASP THR SEQRES 13 A 1117 PHE LYS TYR ASN GLU GLN LEU LEU GLN THR ALA VAL LEU SEQRES 14 A 1117 ALA GLY LEU GLN TRP ARG LEU THR ALA THR SER ASN THR SEQRES 15 A 1117 ALA ILE LYS ASP ALA LYS ASP VAL ALA ALA ILE THR GLY SEQRES 16 A 1117 ILE ASP GLN ALA LEU LEU PRO GLU GLY LEU VAL GLU GLN SEQRES 17 A 1117 PHE ASP THR GLY MET THR LEU THR GLU ALA VAL SER SER SEQRES 18 A 1117 LEU ALA GLN LYS ILE GLU SER TYR TRP GLY LEU SER ARG SEQRES 19 A 1117 ASN PRO ASN ALA PRO LEU GLY TYR THR LYS GLY ILE PRO SEQRES 20 A 1117 THR ALA MET ALA ALA GLU ILE LEU ALA ALA PHE VAL GLU SEQRES 21 A 1117 SER THR ASP VAL VAL GLU ASN ILE VAL ASP MET SER GLU SEQRES 22 A 1117 ILE ASP PRO ASP ASN LYS LYS THR ILE GLY LEU TYR THR SEQRES 23 A 1117 ILE THR GLU LEU ASP SER PHE ASP PRO ILE ASN SER PHE SEQRES 24 A 1117 PRO THR ALA ILE GLU GLU ALA VAL LEU VAL ASN PRO THR SEQRES 25 A 1117 GLU LYS MET PHE PHE GLY ASP ASP ILE PRO PRO VAL ALA SEQRES 26 A 1117 ASN THR GLN LEU ARG ASN PRO ALA VAL ARG ASN THR PRO SEQRES 27 A 1117 GLU GLN LYS ALA ALA LEU LYS ALA GLU GLN ALA THR GLU SEQRES 28 A 1117 PHE TYR VAL HIS THR PRO MET VAL GLN PHE TYR GLU THR SEQRES 29 A 1117 LEU GLY LYS ASP ARG ILE LEU GLU LEU MET GLY ALA GLY SEQRES 30 A 1117 THR LEU ASN LYS GLU LEU LEU ASN ASP ASN HIS ALA LYS SEQRES 31 A 1117 SER LEU GLU GLY LYS ASN ARG SER VAL GLU ASP SER TYR SEQRES 32 A 1117 ASN GLN LEU PHE SER VAL ILE GLU GLN VAL ARG ALA GLN SEQRES 33 A 1117 SER GLU ASP ILE SER THR VAL PRO ILE HIS TYR ALA TYR SEQRES 34 A 1117 ASN MET THR ARG VAL GLY ARG MET GLN MET LEU GLY LYS SEQRES 35 A 1117 TYR ASN PRO GLN SER ALA LYS LEU VAL ARG GLU ALA ILE SEQRES 36 A 1117 LEU PRO THR LYS ALA THR LEU ASP LEU SER ASN GLN ASN SEQRES 37 A 1117 ASN GLU ASP PHE SER ALA PHE GLN LEU GLY LEU ALA GLN SEQRES 38 A 1117 ALA LEU ASP ILE LYS VAL HIS THR MET THR ARG GLU VAL SEQRES 39 A 1117 MET SER ASP GLU LEU THR LYS LEU LEU GLU GLY ASN LEU SEQRES 40 A 1117 LYS PRO ALA ILE ASP MET MET VAL GLU PHE ASN THR THR SEQRES 41 A 1117 GLY SER LEU PRO GLU ASN ALA VAL ASP VAL LEU ASN THR SEQRES 42 A 1117 ALA LEU GLY ASP ARG LYS SER PHE VAL ALA LEU MET ALA SEQRES 43 A 1117 LEU MET GLU TYR SER ARG TYR LEU VAL ALA GLU ASP LYS SEQRES 44 A 1117 SER ALA PHE VAL THR PRO LEU TYR VAL GLU ALA ASP GLY SEQRES 45 A 1117 VAL THR ASN GLY PRO ILE ASN ALA MET MET LEU MET THR SEQRES 46 A 1117 GLY GLY LEU PHE THR PRO ASP TRP ILE ARG ASN ILE ALA SEQRES 47 A 1117 LYS GLY GLY LEU PHE ILE GLY SER PRO ASN LYS THR MET SEQRES 48 A 1117 ASN GLU HIS ARG SER THR ALA ASP ASN ASN ASP LEU TYR SEQRES 49 A 1117 GLN ALA SER THR ASN ALA LEU MET GLU SER LEU GLY LYS SEQRES 50 A 1117 LEU ARG SER ASN TYR ALA SER ASN MET PRO ILE GLN SER SEQRES 51 A 1117 GLN ILE ASP SER LEU LEU SER LEU MET ASP LEU PHE LEU SEQRES 52 A 1117 PRO ASP ILE ASN LEU GLY GLU ASN GLY ALA LEU GLU LEU SEQRES 53 A 1117 LYS ARG GLY ILE ALA LYS ASN PRO LEU THR ILE THR ILE SEQRES 54 A 1117 TYR GLY SER GLY ALA ARG GLY ILE ALA GLY LYS LEU VAL SEQRES 55 A 1117 SER SER VAL THR ASP ALA ILE TYR GLU ARG MET SER ASP SEQRES 56 A 1117 VAL LEU LYS ALA ARG ALA LYS ASP PRO ASN ILE SER ALA SEQRES 57 A 1117 ALA MET ALA MET PHE GLY LYS GLN ALA ALA SER GLU ALA SEQRES 58 A 1117 HIS ALA GLU GLU LEU LEU ALA ARG PHE LEU LYS ASP MET SEQRES 59 A 1117 GLU THR LEU THR SER THR VAL PRO VAL LYS ARG LYS GLY SEQRES 60 A 1117 VAL LEU GLU LEU GLN SER THR GLY THR GLY ALA LYS GLY SEQRES 61 A 1117 LYS ILE ASN PRO LYS THR TYR THR ILE LYS GLY GLU GLN SEQRES 62 A 1117 LEU LYS ALA LEU GLN GLU ASN MET LEU HIS PHE PHE VAL SEQRES 63 A 1117 GLU PRO LEU ARG ASN GLY ILE THR GLN THR VAL GLY GLU SEQRES 64 A 1117 SER LEU VAL TYR SER THR GLU GLN LEU GLN LYS ALA THR SEQRES 65 A 1117 GLN ILE GLN SER VAL VAL LEU GLU ASP MET PHE LYS GLN SEQRES 66 A 1117 ARG VAL GLN GLU LYS LEU ALA GLU LYS ALA LYS ASP PRO SEQRES 67 A 1117 THR TRP LYS LYS GLY ASP PHE LEU THR GLN LYS GLU LEU SEQRES 68 A 1117 ASN ASP ILE GLN ALA SER LEU ASN ASN LEU ALA PRO MET SEQRES 69 A 1117 ILE GLU THR GLY SER GLN THR PHE TYR ILE ALA GLY SER SEQRES 70 A 1117 GLU ASN ALA GLU VAL ALA ASN GLN VAL LEU ALA THR ASN SEQRES 71 A 1117 LEU ASP ASP ARG MET ARG VAL PRO MET SER ILE TYR ALA SEQRES 72 A 1117 PRO ALA GLN ALA GLY VAL ALA GLY ILE PRO PHE MET THR SEQRES 73 A 1117 ILE GLY THR GLY ASP GLY MET MET MET GLN THR LEU SER SEQRES 74 A 1117 THR MET LYS GLY ALA PRO LYS ASN THR LEU LYS ILE PHE SEQRES 75 A 1117 ASP GLY MET ASN ILE GLY LEU ASN ASP ILE THR ASP ALA SEQRES 76 A 1117 SER ARG LYS ALA ASN GLU ALA VAL TYR THR SER TRP GLN SEQRES 77 A 1117 GLY ASN PRO ILE LYS ASN VAL TYR GLU SER TYR ALA LYS SEQRES 78 A 1117 PHE MET LYS ASN VAL ASP PHE SER LYS LEU SER PRO GLU SEQRES 79 A 1117 ALA LEU GLU ALA ILE GLY LYS SER ALA LEU GLU TYR ASP SEQRES 80 A 1117 GLN ARG GLU ASN ALA THR VAL ASP ASP ILE ALA ASN ALA SEQRES 81 A 1117 ALA SER LEU ILE GLU ARG ASN LEU ARG ASN ILE ALA LEU SEQRES 82 A 1117 GLY VAL ASP ILE ARG HIS LYS VAL LEU ASP LYS VAL ASN SEQRES 83 A 1117 LEU SER ILE ASP GLN MET ALA ALA VAL GLY ALA PRO TYR SEQRES 84 A 1117 GLN ASN ASN GLY LYS ILE ASP LEU SER ASN MET THR PRO SEQRES 85 A 1117 GLU GLN GLN ALA ASP GLU LEU ASN LYS LEU PHE ARG GLU SEQRES 86 A 1117 GLU LEU GLU ALA ARG LYS GLN LYS VAL ALA LYS ALA SEQRES 1 B 1117 MET GLY GLY SER HIS HIS HIS HIS HIS HIS ARG SER GLU SEQRES 2 B 1117 SER THR VAL THR GLU GLU LEU LYS GLU GLY ILE ASP ALA SEQRES 3 B 1117 VAL TYR PRO SER LEU VAL GLY THR ALA ASP SER LYS ALA SEQRES 4 B 1117 GLU GLY ILE LYS ASN TYR PHE LYS LEU SER PHE THR LEU SEQRES 5 B 1117 PRO GLU GLU GLN LYS SER ARG THR VAL GLY SER GLU ALA SEQRES 6 B 1117 PRO LEU LYS ASP VAL ALA GLN ALA LEU SER SER ARG ALA SEQRES 7 B 1117 ARG TYR GLU LEU PHE THR GLU LYS GLU THR ALA ASN PRO SEQRES 8 B 1117 ALA PHE ASN GLY GLU VAL ILE LYS ARG TYR LYS GLU LEU SEQRES 9 B 1117 MET GLU HIS GLY GLU GLY ILE ALA ASP ILE LEU ARG SER SEQRES 10 B 1117 ARG LEU ALA LYS PHE LEU ASN THR LYS ASP VAL GLY LYS SEQRES 11 B 1117 ARG PHE ALA GLN GLY THR GLU ALA ASN ARG TRP VAL GLY SEQRES 12 B 1117 GLY LYS LEU LEU ASN ILE VAL GLU GLN ASP GLY ASP THR SEQRES 13 B 1117 PHE LYS TYR ASN GLU GLN LEU LEU GLN THR ALA VAL LEU SEQRES 14 B 1117 ALA GLY LEU GLN TRP ARG LEU THR ALA THR SER ASN THR SEQRES 15 B 1117 ALA ILE LYS ASP ALA LYS ASP VAL ALA ALA ILE THR GLY SEQRES 16 B 1117 ILE ASP GLN ALA LEU LEU PRO GLU GLY LEU VAL GLU GLN SEQRES 17 B 1117 PHE ASP THR GLY MET THR LEU THR GLU ALA VAL SER SER SEQRES 18 B 1117 LEU ALA GLN LYS ILE GLU SER TYR TRP GLY LEU SER ARG SEQRES 19 B 1117 ASN PRO ASN ALA PRO LEU GLY TYR THR LYS GLY ILE PRO SEQRES 20 B 1117 THR ALA MET ALA ALA GLU ILE LEU ALA ALA PHE VAL GLU SEQRES 21 B 1117 SER THR ASP VAL VAL GLU ASN ILE VAL ASP MET SER GLU SEQRES 22 B 1117 ILE ASP PRO ASP ASN LYS LYS THR ILE GLY LEU TYR THR SEQRES 23 B 1117 ILE THR GLU LEU ASP SER PHE ASP PRO ILE ASN SER PHE SEQRES 24 B 1117 PRO THR ALA ILE GLU GLU ALA VAL LEU VAL ASN PRO THR SEQRES 25 B 1117 GLU LYS MET PHE PHE GLY ASP ASP ILE PRO PRO VAL ALA SEQRES 26 B 1117 ASN THR GLN LEU ARG ASN PRO ALA VAL ARG ASN THR PRO SEQRES 27 B 1117 GLU GLN LYS ALA ALA LEU LYS ALA GLU GLN ALA THR GLU SEQRES 28 B 1117 PHE TYR VAL HIS THR PRO MET VAL GLN PHE TYR GLU THR SEQRES 29 B 1117 LEU GLY LYS ASP ARG ILE LEU GLU LEU MET GLY ALA GLY SEQRES 30 B 1117 THR LEU ASN LYS GLU LEU LEU ASN ASP ASN HIS ALA LYS SEQRES 31 B 1117 SER LEU GLU GLY LYS ASN ARG SER VAL GLU ASP SER TYR SEQRES 32 B 1117 ASN GLN LEU PHE SER VAL ILE GLU GLN VAL ARG ALA GLN SEQRES 33 B 1117 SER GLU ASP ILE SER THR VAL PRO ILE HIS TYR ALA TYR SEQRES 34 B 1117 ASN MET THR ARG VAL GLY ARG MET GLN MET LEU GLY LYS SEQRES 35 B 1117 TYR ASN PRO GLN SER ALA LYS LEU VAL ARG GLU ALA ILE SEQRES 36 B 1117 LEU PRO THR LYS ALA THR LEU ASP LEU SER ASN GLN ASN SEQRES 37 B 1117 ASN GLU ASP PHE SER ALA PHE GLN LEU GLY LEU ALA GLN SEQRES 38 B 1117 ALA LEU ASP ILE LYS VAL HIS THR MET THR ARG GLU VAL SEQRES 39 B 1117 MET SER ASP GLU LEU THR LYS LEU LEU GLU GLY ASN LEU SEQRES 40 B 1117 LYS PRO ALA ILE ASP MET MET VAL GLU PHE ASN THR THR SEQRES 41 B 1117 GLY SER LEU PRO GLU ASN ALA VAL ASP VAL LEU ASN THR SEQRES 42 B 1117 ALA LEU GLY ASP ARG LYS SER PHE VAL ALA LEU MET ALA SEQRES 43 B 1117 LEU MET GLU TYR SER ARG TYR LEU VAL ALA GLU ASP LYS SEQRES 44 B 1117 SER ALA PHE VAL THR PRO LEU TYR VAL GLU ALA ASP GLY SEQRES 45 B 1117 VAL THR ASN GLY PRO ILE ASN ALA MET MET LEU MET THR SEQRES 46 B 1117 GLY GLY LEU PHE THR PRO ASP TRP ILE ARG ASN ILE ALA SEQRES 47 B 1117 LYS GLY GLY LEU PHE ILE GLY SER PRO ASN LYS THR MET SEQRES 48 B 1117 ASN GLU HIS ARG SER THR ALA ASP ASN ASN ASP LEU TYR SEQRES 49 B 1117 GLN ALA SER THR ASN ALA LEU MET GLU SER LEU GLY LYS SEQRES 50 B 1117 LEU ARG SER ASN TYR ALA SER ASN MET PRO ILE GLN SER SEQRES 51 B 1117 GLN ILE ASP SER LEU LEU SER LEU MET ASP LEU PHE LEU SEQRES 52 B 1117 PRO ASP ILE ASN LEU GLY GLU ASN GLY ALA LEU GLU LEU SEQRES 53 B 1117 LYS ARG GLY ILE ALA LYS ASN PRO LEU THR ILE THR ILE SEQRES 54 B 1117 TYR GLY SER GLY ALA ARG GLY ILE ALA GLY LYS LEU VAL SEQRES 55 B 1117 SER SER VAL THR ASP ALA ILE TYR GLU ARG MET SER ASP SEQRES 56 B 1117 VAL LEU LYS ALA ARG ALA LYS ASP PRO ASN ILE SER ALA SEQRES 57 B 1117 ALA MET ALA MET PHE GLY LYS GLN ALA ALA SER GLU ALA SEQRES 58 B 1117 HIS ALA GLU GLU LEU LEU ALA ARG PHE LEU LYS ASP MET SEQRES 59 B 1117 GLU THR LEU THR SER THR VAL PRO VAL LYS ARG LYS GLY SEQRES 60 B 1117 VAL LEU GLU LEU GLN SER THR GLY THR GLY ALA LYS GLY SEQRES 61 B 1117 LYS ILE ASN PRO LYS THR TYR THR ILE LYS GLY GLU GLN SEQRES 62 B 1117 LEU LYS ALA LEU GLN GLU ASN MET LEU HIS PHE PHE VAL SEQRES 63 B 1117 GLU PRO LEU ARG ASN GLY ILE THR GLN THR VAL GLY GLU SEQRES 64 B 1117 SER LEU VAL TYR SER THR GLU GLN LEU GLN LYS ALA THR SEQRES 65 B 1117 GLN ILE GLN SER VAL VAL LEU GLU ASP MET PHE LYS GLN SEQRES 66 B 1117 ARG VAL GLN GLU LYS LEU ALA GLU LYS ALA LYS ASP PRO SEQRES 67 B 1117 THR TRP LYS LYS GLY ASP PHE LEU THR GLN LYS GLU LEU SEQRES 68 B 1117 ASN ASP ILE GLN ALA SER LEU ASN ASN LEU ALA PRO MET SEQRES 69 B 1117 ILE GLU THR GLY SER GLN THR PHE TYR ILE ALA GLY SER SEQRES 70 B 1117 GLU ASN ALA GLU VAL ALA ASN GLN VAL LEU ALA THR ASN SEQRES 71 B 1117 LEU ASP ASP ARG MET ARG VAL PRO MET SER ILE TYR ALA SEQRES 72 B 1117 PRO ALA GLN ALA GLY VAL ALA GLY ILE PRO PHE MET THR SEQRES 73 B 1117 ILE GLY THR GLY ASP GLY MET MET MET GLN THR LEU SER SEQRES 74 B 1117 THR MET LYS GLY ALA PRO LYS ASN THR LEU LYS ILE PHE SEQRES 75 B 1117 ASP GLY MET ASN ILE GLY LEU ASN ASP ILE THR ASP ALA SEQRES 76 B 1117 SER ARG LYS ALA ASN GLU ALA VAL TYR THR SER TRP GLN SEQRES 77 B 1117 GLY ASN PRO ILE LYS ASN VAL TYR GLU SER TYR ALA LYS SEQRES 78 B 1117 PHE MET LYS ASN VAL ASP PHE SER LYS LEU SER PRO GLU SEQRES 79 B 1117 ALA LEU GLU ALA ILE GLY LYS SER ALA LEU GLU TYR ASP SEQRES 80 B 1117 GLN ARG GLU ASN ALA THR VAL ASP ASP ILE ALA ASN ALA SEQRES 81 B 1117 ALA SER LEU ILE GLU ARG ASN LEU ARG ASN ILE ALA LEU SEQRES 82 B 1117 GLY VAL ASP ILE ARG HIS LYS VAL LEU ASP LYS VAL ASN SEQRES 83 B 1117 LEU SER ILE ASP GLN MET ALA ALA VAL GLY ALA PRO TYR SEQRES 84 B 1117 GLN ASN ASN GLY LYS ILE ASP LEU SER ASN MET THR PRO SEQRES 85 B 1117 GLU GLN GLN ALA ASP GLU LEU ASN LYS LEU PHE ARG GLU SEQRES 86 B 1117 GLU LEU GLU ALA ARG LYS GLN LYS VAL ALA LYS ALA SEQRES 1 C 36 DT DG DC DC DT DC DC DC DA DG DG DC DA SEQRES 2 C 36 DT DC DC DA DA DA DA DG DA DA DG DC DG SEQRES 3 C 36 DG DA DG DC DT DT DC DT DT DC SEQRES 1 D 36 DT DG DC DC DT DC DC DC DA DG DG DC DA SEQRES 2 D 36 DT DC DC DA DA DA DA DG DA DA DG DC DG SEQRES 3 D 36 DG DA DG DC DT DT DC DT DT DC HET GTP A1106 32 HET G A1107 23 HET 2HP A1108 5 HET POP A1109 9 HET 2HP B1106 5 HET POP B1107 9 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM G GUANOSINE-5'-MONOPHOSPHATE HETNAM 2HP DIHYDROGENPHOSPHATE ION HETNAM POP PYROPHOSPHATE 2- FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 G C10 H14 N5 O8 P FORMUL 7 2HP 2(H2 O4 P 1-) FORMUL 8 POP 2(H2 O7 P2 2-) FORMUL 11 HOH *2399(H2 O) HELIX 1 1 GLU A 7 TYR A 16 1 10 HELIX 2 2 ASN A 32 SER A 37 1 6 HELIX 3 3 ALA A 53 SER A 63 1 11 HELIX 4 4 SER A 64 THR A 72 1 9 HELIX 5 5 ASN A 82 THR A 113 1 32 HELIX 6 6 ASP A 115 GLN A 122 1 8 HELIX 7 7 GLU A 125 TRP A 129 5 5 HELIX 8 8 GLY A 132 ASN A 136 5 5 HELIX 9 9 ASN A 148 THR A 170 1 23 HELIX 10 10 ASP A 174 GLY A 183 1 10 HELIX 11 11 ASP A 185 LEU A 189 5 5 HELIX 12 12 GLY A 192 GLY A 200 1 9 HELIX 13 13 THR A 202 GLY A 219 1 18 HELIX 14 14 PRO A 227 LYS A 232 1 6 HELIX 15 15 LYS A 232 SER A 249 1 18 HELIX 16 16 SER A 260 ILE A 262 5 3 HELIX 17 17 ASP A 282 PHE A 287 5 6 HELIX 18 18 THR A 289 LEU A 296 1 8 HELIX 19 19 THR A 325 THR A 338 1 14 HELIX 20 20 HIS A 343 GLY A 363 1 21 HELIX 21 21 ASN A 373 ALA A 403 1 31 HELIX 22 22 ASP A 407 VAL A 411 5 5 HELIX 23 23 ALA A 436 GLU A 441 1 6 HELIX 24 24 ASN A 457 LEU A 471 1 15 HELIX 25 25 LYS A 474 MET A 478 5 5 HELIX 26 26 THR A 479 GLY A 493 1 15 HELIX 27 27 LEU A 495 GLY A 509 1 15 HELIX 28 28 ASN A 514 GLY A 524 1 11 HELIX 29 29 ASP A 525 LYS A 527 5 3 HELIX 30 30 SER A 528 ALA A 544 1 17 HELIX 31 31 ASP A 546 ALA A 549 5 4 HELIX 32 32 THR A 562 THR A 573 1 12 HELIX 33 33 THR A 578 LYS A 587 1 10 HELIX 34 34 THR A 598 ALA A 606 1 9 HELIX 35 35 ASP A 610 ASN A 629 1 20 HELIX 36 36 ASN A 633 LEU A 651 1 19 HELIX 37 37 ARG A 666 ILE A 668 5 3 HELIX 38 38 ALA A 669 TYR A 678 1 10 HELIX 39 39 GLY A 681 ASP A 711 1 31 HELIX 40 40 SER A 715 GLY A 722 1 8 HELIX 41 41 SER A 727 SER A 747 1 21 HELIX 42 42 LYS A 778 PHE A 793 1 16 HELIX 43 43 PHE A 793 GLY A 806 1 14 HELIX 44 44 GLY A 806 ALA A 843 1 38 HELIX 45 45 THR A 855 LEU A 866 1 12 HELIX 46 46 ASN A 867 ALA A 870 5 4 HELIX 47 47 ALA A 918 GLY A 928 1 11 HELIX 48 48 GLY A 928 MET A 939 1 12 HELIX 49 49 ASP A 959 TRP A 975 1 17 HELIX 50 50 ASN A 978 VAL A 994 1 17 HELIX 51 51 ASP A 995 LEU A 999 5 5 HELIX 52 52 SER A 1000 LEU A 1012 1 13 HELIX 53 53 GLU A 1013 ARG A 1017 5 5 HELIX 54 54 THR A 1021 ASP A 1051 1 31 HELIX 55 55 THR A 1079 GLN A 1100 1 22 HELIX 56 56 THR B 5 TYR B 16 1 12 HELIX 57 57 ASN B 32 SER B 37 1 6 HELIX 58 58 ALA B 53 LEU B 62 1 10 HELIX 59 59 SER B 64 GLU B 73 1 10 HELIX 60 60 ASN B 82 THR B 113 1 32 HELIX 61 61 ASP B 115 GLN B 122 1 8 HELIX 62 62 GLU B 125 TRP B 129 5 5 HELIX 63 63 GLY B 132 ASN B 136 5 5 HELIX 64 64 ASN B 148 ALA B 166 1 19 HELIX 65 65 THR B 167 THR B 170 5 4 HELIX 66 66 ASP B 174 GLY B 183 1 10 HELIX 67 67 ASP B 185 LEU B 189 5 5 HELIX 68 68 GLY B 192 THR B 199 1 8 HELIX 69 69 THR B 202 GLY B 219 1 18 HELIX 70 70 PRO B 227 LYS B 232 1 6 HELIX 71 71 LYS B 232 SER B 249 1 18 HELIX 72 72 SER B 260 ILE B 262 5 3 HELIX 73 73 ASP B 282 PHE B 287 5 6 HELIX 74 74 THR B 289 LEU B 296 1 8 HELIX 75 75 THR B 325 THR B 338 1 14 HELIX 76 76 HIS B 343 GLY B 363 1 21 HELIX 77 77 ASN B 368 LEU B 372 5 5 HELIX 78 78 ASN B 373 SER B 405 1 33 HELIX 79 79 ASP B 407 VAL B 411 5 5 HELIX 80 80 ALA B 436 GLU B 441 1 6 HELIX 81 81 ASN B 457 LEU B 471 1 15 HELIX 82 82 LYS B 474 MET B 478 5 5 HELIX 83 83 THR B 479 GLY B 493 1 15 HELIX 84 84 LEU B 495 GLY B 509 1 15 HELIX 85 85 ASN B 514 GLY B 524 1 11 HELIX 86 86 ASP B 525 LYS B 527 5 3 HELIX 87 87 SER B 528 ALA B 544 1 17 HELIX 88 88 ASP B 546 ALA B 549 5 4 HELIX 89 89 THR B 562 THR B 573 1 12 HELIX 90 90 THR B 578 LYS B 587 1 10 HELIX 91 91 THR B 598 ALA B 606 1 9 HELIX 92 92 ASP B 610 TYR B 630 1 21 HELIX 93 93 ASN B 633 LEU B 651 1 19 HELIX 94 94 ARG B 666 ILE B 668 5 3 HELIX 95 95 ALA B 669 ILE B 677 1 9 HELIX 96 96 GLY B 681 ASP B 711 1 31 HELIX 97 97 ALA B 716 GLY B 722 1 7 HELIX 98 98 SER B 727 SER B 747 1 21 HELIX 99 99 LYS B 778 PHE B 793 1 16 HELIX 100 100 PHE B 793 GLY B 806 1 14 HELIX 101 101 GLY B 806 ALA B 843 1 38 HELIX 102 102 LYS B 849 PHE B 853 5 5 HELIX 103 103 THR B 855 SER B 865 1 11 HELIX 104 104 LEU B 866 ALA B 870 5 5 HELIX 105 105 ALA B 918 GLY B 928 1 11 HELIX 106 106 GLY B 928 MET B 939 1 12 HELIX 107 107 ASP B 959 TRP B 975 1 17 HELIX 108 108 ASN B 978 VAL B 994 1 17 HELIX 109 109 ASP B 995 LEU B 999 5 5 HELIX 110 110 SER B 1000 LEU B 1012 1 13 HELIX 111 111 GLU B 1013 GLU B 1018 1 6 HELIX 112 112 THR B 1021 VAL B 1053 1 33 HELIX 113 113 THR B 1079 ALA B 1097 1 19 SHEET 1 A 2 PHE A 38 THR A 39 0 SHEET 2 A 2 SER A 221 ARG A 222 -1 O SER A 221 N THR A 39 SHEET 1 B 2 VAL A 138 ASP A 141 0 SHEET 2 B 2 THR A 144 TYR A 147 -1 O THR A 144 N ASP A 141 SHEET 1 C 2 VAL A 252 ASP A 258 0 SHEET 2 C 2 THR A 269 ILE A 275 -1 O ILE A 270 N VAL A 257 SHEET 1 D 2 PHE A 304 PHE A 305 0 SHEET 2 D 2 ILE A 413 HIS A 414 -1 O HIS A 414 N PHE A 304 SHEET 1 E 2 THR A 315 GLN A 316 0 SHEET 2 E 2 ASN A 319 ARG A 323 -1 O VAL A 322 N GLN A 316 SHEET 1 F 2 TYR A 341 VAL A 342 0 SHEET 2 F 2 ILE A 443 LEU A 444 -1 O LEU A 444 N TYR A 341 SHEET 1 G 2 TYR A 417 MET A 419 0 SHEET 2 G 2 MET A 425 MET A 427 -1 O GLN A 426 N ASN A 418 SHEET 1 H 2 ALA A 448 LEU A 450 0 SHEET 2 H 2 PHE A 550 THR A 552 -1 O PHE A 550 N LEU A 450 SHEET 1 I 4 LEU A 947 LYS A 948 0 SHEET 2 I 4 GLY A 952 GLY A 956 -1 O ASN A 954 N LEU A 947 SHEET 3 I 4 TYR A 555 GLY A 560 -1 N VAL A 556 O ILE A 955 SHEET 4 I 4 MET A1060 ALA A1061 -1 O ALA A1061 N ASP A 559 SHEET 1 J 3 LEU A 590 ILE A 592 0 SHEET 2 J 3 LEU A1055 ILE A1057 -1 O SER A1056 N PHE A 591 SHEET 3 J 3 TYR A1067 GLN A1068 -1 O TYR A1067 N ILE A1057 SHEET 1 K 2 ILE A 654 LEU A 656 0 SHEET 2 K 2 LEU A 662 LEU A 664 -1 O GLU A 663 N ASN A 655 SHEET 1 L 2 THR A 748 ARG A 753 0 SHEET 2 L 2 VAL A 756 SER A 761 -1 O GLU A 758 N VAL A 751 SHEET 1 M 2 ILE A 873 GLU A 874 0 SHEET 2 M 2 THR A 879 PHE A 880 -1 O PHE A 880 N ILE A 873 SHEET 1 N 2 GLY A 884 ASN A 887 0 SHEET 2 N 2 ILE A 909 PRO A 912 -1 O ALA A 911 N SER A 885 SHEET 1 O 2 VAL A 894 ALA A 896 0 SHEET 2 O 2 VAL A 905 PRO A 906 -1 O VAL A 905 N LEU A 895 SHEET 1 P 2 PHE B 38 THR B 39 0 SHEET 2 P 2 SER B 221 ARG B 222 -1 O SER B 221 N THR B 39 SHEET 1 Q 2 VAL B 138 ASP B 141 0 SHEET 2 Q 2 THR B 144 TYR B 147 -1 O THR B 144 N ASP B 141 SHEET 1 R 2 VAL B 252 ASP B 258 0 SHEET 2 R 2 THR B 269 ILE B 275 -1 O ILE B 270 N VAL B 257 SHEET 1 S 2 PHE B 304 PHE B 305 0 SHEET 2 S 2 ILE B 413 HIS B 414 -1 O HIS B 414 N PHE B 304 SHEET 1 T 2 THR B 315 GLN B 316 0 SHEET 2 T 2 ASN B 319 ARG B 323 -1 O VAL B 322 N GLN B 316 SHEET 1 U 2 TYR B 341 VAL B 342 0 SHEET 2 U 2 ILE B 443 LEU B 444 -1 O LEU B 444 N TYR B 341 SHEET 1 V 2 TYR B 417 MET B 419 0 SHEET 2 V 2 MET B 425 MET B 427 -1 O GLN B 426 N ASN B 418 SHEET 1 W 2 ALA B 448 LEU B 450 0 SHEET 2 W 2 PHE B 550 THR B 552 -1 O PHE B 550 N LEU B 450 SHEET 1 X 4 LEU B 947 LYS B 948 0 SHEET 2 X 4 GLY B 952 GLY B 956 -1 O ASN B 954 N LEU B 947 SHEET 3 X 4 TYR B 555 GLY B 560 -1 N VAL B 556 O ILE B 955 SHEET 4 X 4 MET B1060 ALA B1061 -1 O ALA B1061 N ASP B 559 SHEET 1 Y 3 LEU B 590 ILE B 592 0 SHEET 2 Y 3 LEU B1055 ILE B1057 -1 O SER B1056 N PHE B 591 SHEET 3 Y 3 TYR B1067 GLN B1068 -1 O TYR B1067 N ILE B1057 SHEET 1 Z 2 ILE B 654 LEU B 656 0 SHEET 2 Z 2 LEU B 662 LEU B 664 -1 O GLU B 663 N ASN B 655 SHEET 1 AA 2 THR B 748 LYS B 752 0 SHEET 2 AA 2 LEU B 757 SER B 761 -1 O GLU B 758 N VAL B 751 SHEET 1 AB 2 ILE B 873 GLU B 874 0 SHEET 2 AB 2 THR B 879 PHE B 880 -1 O PHE B 880 N ILE B 873 SHEET 1 AC 2 GLY B 884 ASN B 887 0 SHEET 2 AC 2 ILE B 909 PRO B 912 -1 O ILE B 909 N ASN B 887 SHEET 1 AD 2 VAL B 894 ALA B 896 0 SHEET 2 AD 2 VAL B 905 PRO B 906 -1 O VAL B 905 N LEU B 895 LINK O3' GTP A1106 P G A1107 1555 1555 1.60 SITE 1 AC1 15 ARG A 424 LYS A 437 ARG A 440 ILE A 949 SITE 2 AC1 15 ASP A 951 G A1107 HOH A1545 HOH A1608 SITE 3 AC1 15 HOH A2158 HOH A2160 HOH A2161 HOH A2211 SITE 4 AC1 15 HOH A2245 DC C 5 DA C 6 SITE 1 AC2 13 ARG A 424 GLY A 564 PRO A 565 ASN A 671 SITE 2 AC2 13 THR A 674 TYR A 678 ASP A 951 GTP A1106 SITE 3 AC2 13 HOH A1273 HOH A1432 HOH A2161 DC C 4 SITE 4 AC2 13 DC C 5 SITE 1 AC3 8 GLN A 469 ILE A 473 LYS A 474 VAL A 475 SITE 2 AC3 8 HIS A 476 HOH A1204 HOH A1250 HOH A1618 SITE 1 AC4 8 GLY A 560 VAL A 561 THR A 562 TYR A 612 SITE 2 AC4 8 ARG A 666 LYS A 670 HOH A1284 HOH A1612 SITE 1 AC5 8 GLN B 469 ILE B 473 LYS B 474 VAL B 475 SITE 2 AC5 8 HIS B 476 HOH B1876 HOH B1950 HOH B2646 SITE 1 AC6 9 HIS B 476 GLY B 560 VAL B 561 THR B 562 SITE 2 AC6 9 ASP B 610 TYR B 612 ARG B 666 HOH B1888 SITE 3 AC6 9 HOH B2130 CRYST1 83.459 111.790 277.009 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011982 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003610 0.00000