HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-DEC-10 3Q2J TITLE CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE IIIA TITLE 2 PROTEIN KINASE INHIBITOR CKI-7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APH(3')III, KANAMYCIN KINASE, TYPE III, NEOMYCIN-KANAMYCIN COMPND 5 PHOSPHOTRANSFERASE TYPE III; COMPND 6 EC: 2.7.1.95; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322 KEYWDS SER/THR/TYR PROTEIN KINASE, KINASE, PHOSPHORYLATION, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.H.FONG,B.XIONG,J.HWANG,A.M.BERGHUIS REVDAT 4 13-SEP-23 3Q2J 1 REMARK LINK REVDAT 3 17-JUL-19 3Q2J 1 REMARK REVDAT 2 19-JUN-13 3Q2J 1 JRNL VERSN REVDAT 1 18-MAY-11 3Q2J 0 JRNL AUTH D.H.FONG,B.XIONG,J.HWANG,A.M.BERGHUIS JRNL TITL CRYSTAL STRUCTURES OF TWO AMINOGLYCOSIDE KINASES BOUND WITH JRNL TITL 2 A EUKARYOTIC PROTEIN KINASE INHIBITOR. JRNL REF PLOS ONE V. 6 19589 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21573013 JRNL DOI 10.1371/JOURNAL.PONE.0019589 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 31372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5977 - 4.6309 0.99 3226 317 0.1957 0.2271 REMARK 3 2 4.6309 - 3.6762 1.00 3080 330 0.1558 0.1871 REMARK 3 3 3.6762 - 3.2116 1.00 3044 316 0.1798 0.2252 REMARK 3 4 3.2116 - 2.9180 0.99 2996 311 0.1919 0.2442 REMARK 3 5 2.9180 - 2.7089 0.98 2941 354 0.2028 0.2629 REMARK 3 6 2.7089 - 2.5492 0.98 2892 354 0.2123 0.2762 REMARK 3 7 2.5492 - 2.4215 0.96 2934 251 0.2121 0.2608 REMARK 3 8 2.4215 - 2.3161 0.91 2748 288 0.2071 0.2810 REMARK 3 9 2.3161 - 2.2270 0.82 2414 272 0.2085 0.2629 REMARK 3 10 2.2270 - 2.1501 0.70 2079 225 0.2173 0.2705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 41.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41930 REMARK 3 B22 (A**2) : -1.47440 REMARK 3 B33 (A**2) : 1.05510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4462 REMARK 3 ANGLE : 1.081 6022 REMARK 3 CHIRALITY : 0.075 628 REMARK 3 PLANARITY : 0.004 776 REMARK 3 DIHEDRAL : 14.269 1710 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1J7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3000, TRIS PH O8.0, 0.2M REMARK 280 CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, REMARK 280 PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.91850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.92600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.91850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.92600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 12 CD CE NZ REMARK 480 GLU A 103 CD OE1 OE2 REMARK 480 ASP A 104 CB CG OD1 OD2 REMARK 480 GLN A 106 CB CG CD OE1 NE2 REMARK 480 SER A 107 CB OG REMARK 480 GLU A 109 CD OE1 OE2 REMARK 480 LYS A 110 CG CD CE NZ REMARK 480 ILE A 111 CD1 REMARK 480 GLU A 161 CD OE1 OE2 REMARK 480 ASP A 162 CG OD1 OD2 REMARK 480 THR A 163 OG1 CG2 REMARK 480 GLU A 183 CD OE1 OE2 REMARK 480 LYS A 202 CD CE NZ REMARK 480 GLU A 234 CD OE1 OE2 REMARK 480 LYS B 3 NZ REMARK 480 ASP B 22 CG OD1 OD2 REMARK 480 THR B 23 CB OG1 CG2 REMARK 480 LYS B 30 NZ REMARK 480 LYS B 75 CD CE NZ REMARK 480 TYR B 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU B 103 CB CG CD OE1 OE2 REMARK 480 ASP B 104 CB CG OD1 OD2 REMARK 480 GLU B 105 CB CG CD OE1 OE2 REMARK 480 GLN B 106 CA CB CG CD OE1 NE2 REMARK 480 ASP B 162 CB CG OD1 OD2 REMARK 480 THR B 163 CB OG1 CG2 REMARK 480 LYS B 166 CB CG CD CE NZ REMARK 480 LYS B 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 316 O HOH B 331 1.83 REMARK 500 OG SER A 48 O HOH A 267 1.87 REMARK 500 OE1 GLU B 113 O HOH B 381 2.00 REMARK 500 O HOH B 361 O HOH B 382 2.02 REMARK 500 O HOH B 276 O HOH B 380 2.03 REMARK 500 NH1 ARG B 211 O HOH B 330 2.12 REMARK 500 OD2 ASP B 129 O HOH B 370 2.16 REMARK 500 O HOH B 368 O HOH B 372 2.16 REMARK 500 OE1 GLU A 181 O HOH A 381 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 385 O HOH B 387 4546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 -41.86 81.82 REMARK 500 THR A 23 24.05 -74.72 REMARK 500 GLN A 106 22.03 -76.91 REMARK 500 ASN A 134 48.80 -98.85 REMARK 500 ASP A 155 -153.62 -164.87 REMARK 500 ASP A 190 54.55 -153.55 REMARK 500 ASN A 195 13.96 -140.03 REMARK 500 ASP A 208 60.68 61.46 REMARK 500 ASP A 231 -101.37 -80.47 REMARK 500 ILE A 232 142.40 -37.74 REMARK 500 ARG B 5 -34.46 75.84 REMARK 500 SER B 107 68.70 -108.05 REMARK 500 ASP B 155 -151.41 -161.54 REMARK 500 ASP B 190 49.16 -151.70 REMARK 500 ASP B 200 39.15 81.62 REMARK 500 ASP B 208 64.90 62.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 O REMARK 620 2 ASP A 155 OD2 88.1 REMARK 620 3 ASP A 155 OD1 81.3 46.2 REMARK 620 4 GLU A 157 OE2 176.7 93.7 102.0 REMARK 620 5 GLU A 262 O 94.4 156.9 156.8 82.9 REMARK 620 6 HOH A 352 O 101.3 117.4 74.0 80.4 84.7 REMARK 620 7 HOH A 357 O 82.3 78.5 122.4 95.3 79.0 163.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 153 O REMARK 620 2 ASP B 155 OD1 89.2 REMARK 620 3 ASP B 155 OD2 88.8 46.6 REMARK 620 4 GLU B 157 OE2 173.3 85.8 84.5 REMARK 620 5 GLU B 262 O 100.3 164.6 144.6 85.6 REMARK 620 6 HOH B 360 O 87.9 84.0 130.5 96.1 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CKI A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CKI B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J7L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA ADP COMPLEX REMARK 900 RELATED ID: 1J7I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA APOENZYME REMARK 900 RELATED ID: 1J7U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA AMPPNP COMPLEX REMARK 900 RELATED ID: 1L8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA ADP KANAMYCIN A COMPLEX REMARK 900 RELATED ID: 2B0Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA ADP NEOMYCIN B COMPLEX REMARK 900 RELATED ID: 3H8P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA AMPPNP BUTIROSIN A COMPLEX DBREF 3Q2J A 1 264 UNP P0A3Y5 KKA3_ENTFA 1 264 DBREF 3Q2J B 1 264 UNP P0A3Y5 KKA3_ENTFA 1 264 SEQRES 1 A 264 MET ALA LYS MET ARG ILE SER PRO GLU LEU LYS LYS LEU SEQRES 2 A 264 ILE GLU LYS TYR ARG CYS VAL LYS ASP THR GLU GLY MET SEQRES 3 A 264 SER PRO ALA LYS VAL TYR LYS LEU VAL GLY GLU ASN GLU SEQRES 4 A 264 ASN LEU TYR LEU LYS MET THR ASP SER ARG TYR LYS GLY SEQRES 5 A 264 THR THR TYR ASP VAL GLU ARG GLU LYS ASP MET MET LEU SEQRES 6 A 264 TRP LEU GLU GLY LYS LEU PRO VAL PRO LYS VAL LEU HIS SEQRES 7 A 264 PHE GLU ARG HIS ASP GLY TRP SER ASN LEU LEU MET SER SEQRES 8 A 264 GLU ALA ASP GLY VAL LEU CYS SER GLU GLU TYR GLU ASP SEQRES 9 A 264 GLU GLN SER PRO GLU LYS ILE ILE GLU LEU TYR ALA GLU SEQRES 10 A 264 CYS ILE ARG LEU PHE HIS SER ILE ASP ILE SER ASP CYS SEQRES 11 A 264 PRO TYR THR ASN SER LEU ASP SER ARG LEU ALA GLU LEU SEQRES 12 A 264 ASP TYR LEU LEU ASN ASN ASP LEU ALA ASP VAL ASP CYS SEQRES 13 A 264 GLU ASN TRP GLU GLU ASP THR PRO PHE LYS ASP PRO ARG SEQRES 14 A 264 GLU LEU TYR ASP PHE LEU LYS THR GLU LYS PRO GLU GLU SEQRES 15 A 264 GLU LEU VAL PHE SER HIS GLY ASP LEU GLY ASP SER ASN SEQRES 16 A 264 ILE PHE VAL LYS ASP GLY LYS VAL SER GLY PHE ILE ASP SEQRES 17 A 264 LEU GLY ARG SER GLY ARG ALA ASP LYS TRP TYR ASP ILE SEQRES 18 A 264 ALA PHE CYS VAL ARG SER ILE ARG GLU ASP ILE GLY GLU SEQRES 19 A 264 GLU GLN TYR VAL GLU LEU PHE PHE ASP LEU LEU GLY ILE SEQRES 20 A 264 LYS PRO ASP TRP GLU LYS ILE LYS TYR TYR ILE LEU LEU SEQRES 21 A 264 ASP GLU LEU PHE SEQRES 1 B 264 MET ALA LYS MET ARG ILE SER PRO GLU LEU LYS LYS LEU SEQRES 2 B 264 ILE GLU LYS TYR ARG CYS VAL LYS ASP THR GLU GLY MET SEQRES 3 B 264 SER PRO ALA LYS VAL TYR LYS LEU VAL GLY GLU ASN GLU SEQRES 4 B 264 ASN LEU TYR LEU LYS MET THR ASP SER ARG TYR LYS GLY SEQRES 5 B 264 THR THR TYR ASP VAL GLU ARG GLU LYS ASP MET MET LEU SEQRES 6 B 264 TRP LEU GLU GLY LYS LEU PRO VAL PRO LYS VAL LEU HIS SEQRES 7 B 264 PHE GLU ARG HIS ASP GLY TRP SER ASN LEU LEU MET SER SEQRES 8 B 264 GLU ALA ASP GLY VAL LEU CYS SER GLU GLU TYR GLU ASP SEQRES 9 B 264 GLU GLN SER PRO GLU LYS ILE ILE GLU LEU TYR ALA GLU SEQRES 10 B 264 CYS ILE ARG LEU PHE HIS SER ILE ASP ILE SER ASP CYS SEQRES 11 B 264 PRO TYR THR ASN SER LEU ASP SER ARG LEU ALA GLU LEU SEQRES 12 B 264 ASP TYR LEU LEU ASN ASN ASP LEU ALA ASP VAL ASP CYS SEQRES 13 B 264 GLU ASN TRP GLU GLU ASP THR PRO PHE LYS ASP PRO ARG SEQRES 14 B 264 GLU LEU TYR ASP PHE LEU LYS THR GLU LYS PRO GLU GLU SEQRES 15 B 264 GLU LEU VAL PHE SER HIS GLY ASP LEU GLY ASP SER ASN SEQRES 16 B 264 ILE PHE VAL LYS ASP GLY LYS VAL SER GLY PHE ILE ASP SEQRES 17 B 264 LEU GLY ARG SER GLY ARG ALA ASP LYS TRP TYR ASP ILE SEQRES 18 B 264 ALA PHE CYS VAL ARG SER ILE ARG GLU ASP ILE GLY GLU SEQRES 19 B 264 GLU GLN TYR VAL GLU LEU PHE PHE ASP LEU LEU GLY ILE SEQRES 20 B 264 LYS PRO ASP TRP GLU LYS ILE LYS TYR TYR ILE LEU LEU SEQRES 21 B 264 ASP GLU LEU PHE HET CA A 301 1 HET CKI A 300 18 HET CA B 301 1 HET CKI B 300 18 HETNAM CA CALCIUM ION HETNAM CKI N-(2-AMINOETHYL)-5-CHLOROISOQUINOLINE-8-SULFONAMIDE FORMUL 3 CA 2(CA 2+) FORMUL 4 CKI 2(C11 H12 CL N3 O2 S) FORMUL 7 HOH *281(H2 O) HELIX 1 1 SER A 7 GLU A 15 1 9 HELIX 2 2 ASP A 47 LYS A 51 5 5 HELIX 3 3 ASP A 56 GLU A 68 1 13 HELIX 4 4 CYS A 98 TYR A 102 1 5 HELIX 5 5 SER A 107 SER A 124 1 18 HELIX 6 6 SER A 135 ASN A 149 1 15 HELIX 7 7 ASP A 155 GLU A 160 1 6 HELIX 8 8 ASP A 167 GLU A 178 1 12 HELIX 9 9 LYS A 217 ASP A 231 1 15 HELIX 10 10 GLU A 235 GLY A 246 1 12 HELIX 11 11 ASP A 250 GLU A 262 1 13 HELIX 12 12 SER B 7 ILE B 14 1 8 HELIX 13 13 ASP B 47 LYS B 51 5 5 HELIX 14 14 ASP B 56 GLU B 68 1 13 HELIX 15 15 CYS B 98 TYR B 102 1 5 HELIX 16 16 SER B 107 ILE B 125 1 19 HELIX 17 17 SER B 135 ASN B 149 1 15 HELIX 18 18 ASP B 155 GLU B 160 1 6 HELIX 19 19 ASP B 167 GLU B 178 1 12 HELIX 20 20 LYS B 217 ILE B 232 1 16 HELIX 21 21 GLU B 235 GLY B 246 1 12 HELIX 22 22 ASP B 250 GLU B 262 1 13 SHEET 1 A 5 ARG A 18 LYS A 21 0 SHEET 2 A 5 LYS A 30 VAL A 35 -1 O LYS A 33 N VAL A 20 SHEET 3 A 5 ASN A 40 THR A 46 -1 O LEU A 43 N TYR A 32 SHEET 4 A 5 TRP A 85 SER A 91 -1 O MET A 90 N TYR A 42 SHEET 5 A 5 VAL A 76 HIS A 82 -1 N GLU A 80 O ASN A 87 SHEET 1 B 3 VAL A 96 LEU A 97 0 SHEET 2 B 3 ILE A 196 LYS A 199 -1 O VAL A 198 N VAL A 96 SHEET 3 B 3 LYS A 202 PHE A 206 -1 O SER A 204 N PHE A 197 SHEET 1 C 2 LEU A 184 SER A 187 0 SHEET 2 C 2 GLY A 213 ASP A 216 -1 O GLY A 213 N SER A 187 SHEET 1 D 5 ARG B 18 LYS B 21 0 SHEET 2 D 5 LYS B 30 VAL B 35 -1 O VAL B 35 N ARG B 18 SHEET 3 D 5 ASN B 40 THR B 46 -1 O MET B 45 N LYS B 30 SHEET 4 D 5 TRP B 85 SER B 91 -1 O LEU B 88 N LYS B 44 SHEET 5 D 5 VAL B 76 HIS B 82 -1 N HIS B 78 O LEU B 89 SHEET 1 E 3 VAL B 96 LEU B 97 0 SHEET 2 E 3 ILE B 196 VAL B 198 -1 O VAL B 198 N VAL B 96 SHEET 3 E 3 VAL B 203 PHE B 206 -1 O SER B 204 N PHE B 197 SHEET 1 F 2 LEU B 184 SER B 187 0 SHEET 2 F 2 GLY B 213 ASP B 216 -1 O GLY B 213 N SER B 187 SSBOND 1 CYS A 19 CYS B 156 1555 1555 2.04 SSBOND 2 CYS A 156 CYS B 19 1555 1555 2.04 LINK O ASP A 153 CA CA A 301 1555 1555 2.60 LINK OD2 ASP A 155 CA CA A 301 1555 1555 2.75 LINK OD1 ASP A 155 CA CA A 301 1555 1555 2.87 LINK OE2 GLU A 157 CA CA A 301 1555 1555 2.58 LINK O GLU A 262 CA CA A 301 1555 1555 2.46 LINK CA CA A 301 O HOH A 352 1555 1555 2.21 LINK CA CA A 301 O HOH A 357 1555 1555 2.48 LINK O ASP B 153 CA CA B 301 1555 1555 2.57 LINK OD1 ASP B 155 CA CA B 301 1555 1555 2.64 LINK OD2 ASP B 155 CA CA B 301 1555 1555 2.91 LINK OE2 GLU B 157 CA CA B 301 1555 1555 2.57 LINK O GLU B 262 CA CA B 301 1555 1555 2.55 LINK CA CA B 301 O HOH B 360 1555 1555 2.64 CISPEP 1 SER A 27 PRO A 28 0 8.91 CISPEP 2 SER B 27 PRO B 28 0 7.41 SITE 1 AC1 6 ASP A 153 ASP A 155 GLU A 157 GLU A 262 SITE 2 AC1 6 HOH A 352 HOH A 357 SITE 1 AC2 11 VAL A 31 TYR A 42 MET A 90 SER A 91 SITE 2 AC2 11 GLU A 92 ALA A 93 LEU A 97 SER A 194 SITE 3 AC2 11 PHE A 197 ILE A 207 HOH A 410 SITE 1 AC3 5 ASP B 153 ASP B 155 GLU B 157 GLU B 262 SITE 2 AC3 5 HOH B 360 SITE 1 AC4 7 TYR B 42 SER B 91 ALA B 93 LEU B 97 SITE 2 AC4 7 SER B 194 PHE B 197 HOH B 364 CRYST1 49.837 91.852 131.150 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007625 0.00000