HEADER TRANSCRIPTION/DNA 20-DEC-10 3Q2Y TITLE CRYSTAL STRUCTURE OF BMRR BOUND TO ETHIDIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIDRUG-EFFLUX TRANSPORTER 1 REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 23 BP PROMOTER; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BMRR, BMR1R, BSU24020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: 23 BP BMRR PROMOTER KEYWDS PROTEIN DNA COMPLEX, TRANSCRIPTION REGULATOR, MULTIDRUG BINDING, KEYWDS 2 MULTIDRUG RESISTANCE, TRANSCIPTION FACTOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BACHAS,C.EGINTON,G.GUNIO,H.WADE REVDAT 4 21-FEB-24 3Q2Y 1 REMARK SEQADV REVDAT 3 08-NOV-17 3Q2Y 1 REMARK REVDAT 2 20-JUL-11 3Q2Y 1 JRNL REVDAT 1 15-JUN-11 3Q2Y 0 JRNL AUTH S.BACHAS,C.EGINTON,D.GUNIO,H.WADE JRNL TITL STRUCTURAL CONTRIBUTIONS TO MULTIDRUG RECOGNITION IN THE JRNL TITL 2 MULTIDRUG RESISTANCE (MDR) GENE REGULATOR, BMRR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 11046 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21690368 JRNL DOI 10.1073/PNAS.1104850108 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 14566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 468 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.554 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.730 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2830 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3930 ; 1.733 ; 2.199 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 6.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;31.571 ;24.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;18.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.747 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1969 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 0.774 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 2.153 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1688 ; 3.484 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1880 -16.6250 20.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2673 REMARK 3 T33: 0.3848 T12: 0.0342 REMARK 3 T13: 0.0033 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 4.4834 L22: 4.6421 REMARK 3 L33: 6.9986 L12: 1.8851 REMARK 3 L13: 1.6080 L23: 3.2109 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: -0.0658 S13: 0.1227 REMARK 3 S21: -0.1096 S22: -0.2414 S23: 0.4197 REMARK 3 S31: -0.0260 S32: -0.5261 S33: 0.2805 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7370 -1.5290 16.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.6190 T22: 0.4714 REMARK 3 T33: 0.4456 T12: 0.0421 REMARK 3 T13: 0.0219 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 35.6642 L22: 12.2459 REMARK 3 L33: 3.3126 L12: 8.0518 REMARK 3 L13: 1.1926 L23: -5.5645 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: 1.9193 S13: 1.6438 REMARK 3 S21: -0.0594 S22: -0.1172 S23: 0.1176 REMARK 3 S31: 0.0274 S32: 0.3181 S33: 0.1901 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 68.0000 5.8920 44.3400 REMARK 3 T TENSOR REMARK 3 T11: 0.4055 T22: 0.2808 REMARK 3 T33: 0.6248 T12: 0.0397 REMARK 3 T13: 0.0283 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.6869 L22: 5.9625 REMARK 3 L33: 16.3905 L12: 0.8562 REMARK 3 L13: 3.1175 L23: 3.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.1054 S13: 0.0726 REMARK 3 S21: -0.2982 S22: 0.1648 S23: -0.2591 REMARK 3 S31: -0.5119 S32: 0.3386 S33: -0.1475 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 66.1050 21.5220 57.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.3623 T22: 0.2276 REMARK 3 T33: 0.4901 T12: -0.1112 REMARK 3 T13: 0.0808 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 6.6066 L22: 2.7614 REMARK 3 L33: 8.2731 L12: -1.8930 REMARK 3 L13: 1.7583 L23: -0.4946 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: 0.1712 S13: -0.2244 REMARK 3 S21: -0.1998 S22: 0.0376 S23: -0.0986 REMARK 3 S31: 0.4416 S32: -0.0753 S33: -0.1316 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2140 23.9340 64.7960 REMARK 3 T TENSOR REMARK 3 T11: 0.2907 T22: 0.2286 REMARK 3 T33: 0.4085 T12: 0.0287 REMARK 3 T13: 0.0376 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.8735 L22: 2.9109 REMARK 3 L33: 2.5514 L12: 1.0085 REMARK 3 L13: -0.4350 L23: -0.9596 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.1301 S13: -0.1685 REMARK 3 S21: 0.0438 S22: -0.1923 S23: -0.0669 REMARK 3 S31: 0.1789 S32: 0.1623 S33: 0.1198 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -12 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6440 -16.1420 33.2630 REMARK 3 T TENSOR REMARK 3 T11: 0.5457 T22: 0.4818 REMARK 3 T33: 0.3975 T12: -0.1802 REMARK 3 T13: 0.1130 T23: -0.1267 REMARK 3 L TENSOR REMARK 3 L11: 5.9182 L22: 0.7513 REMARK 3 L33: 4.4203 L12: 0.9886 REMARK 3 L13: 1.1513 L23: 1.6882 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.4165 S13: 0.1625 REMARK 3 S21: 0.2227 S22: -0.4711 S23: 0.2267 REMARK 3 S31: 0.3108 S32: -0.8923 S33: 0.4452 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6820 18.3040 40.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.4582 T22: 0.4730 REMARK 3 T33: 0.5046 T12: 0.0781 REMARK 3 T13: -0.0540 T23: -0.1409 REMARK 3 L TENSOR REMARK 3 L11: 4.9202 L22: 1.9620 REMARK 3 L33: 6.7285 L12: -1.3026 REMARK 3 L13: 0.5656 L23: 1.0321 REMARK 3 S TENSOR REMARK 3 S11: 0.4856 S12: 0.4535 S13: 0.6567 REMARK 3 S21: -0.5568 S22: -0.7066 S23: 0.1958 REMARK 3 S31: -0.7931 S32: -0.9394 S33: 0.2211 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 58.7300 23.2130 65.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.8817 T22: 0.8474 REMARK 3 T33: 0.4024 T12: -0.3078 REMARK 3 T13: -0.2690 T23: -0.1428 REMARK 3 L TENSOR REMARK 3 L11: 99.2587 L22: 61.4864 REMARK 3 L33: 48.5496 L12: -43.6245 REMARK 3 L13: -45.5740 L23: 54.0391 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -3.0143 S13: 2.3155 REMARK 3 S21: -0.2927 S22: 0.2428 S23: -0.4641 REMARK 3 S31: -0.2617 S32: 0.1852 S33: -0.3283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000063127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16383 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM MALONATE, 0.05% JEFFAMINE REMARK 280 PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.87000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.30500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.43500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.87000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.43500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.87000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 138 OE1 GLU A 138 8665 2.10 REMARK 500 CD GLU A 138 OE1 GLU A 138 8665 2.15 REMARK 500 OE1 GLU A 138 OE2 GLU A 138 8665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 138 CB GLU A 138 CG 0.131 REMARK 500 GLU A 138 CG GLU A 138 CD 0.112 REMARK 500 DC B -9 O3' DC B -9 C3' -0.051 REMARK 500 DC B -3 O3' DT B -2 P -0.146 REMARK 500 DG B 9 O3' DG B 9 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B -12 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DC B -10 N1 - C2 - O2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC B -10 N3 - C2 - O2 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B -9 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT B -7 N3 - C4 - O4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC B -6 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC B -5 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC B -4 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B -2 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DT B -2 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B -2 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B -2 C3' - O3' - P ANGL. DEV. = -22.5 DEGREES REMARK 500 DT B 1 O3' - P - O5' ANGL. DEV. = -12.9 DEGREES REMARK 500 DT B 1 O3' - P - OP2 ANGL. DEV. = 21.1 DEGREES REMARK 500 DT B 1 O3' - P - OP1 ANGL. DEV. = -23.3 DEGREES REMARK 500 DA B 2 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES REMARK 500 DA B 2 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 3 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DG B 5 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG B 6 C4' - C3' - C2' ANGL. DEV. = 7.0 DEGREES REMARK 500 DG B 6 O4' - C1' - C2' ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 120 157.03 178.96 REMARK 500 ASN A 168 -164.59 -172.11 REMARK 500 SER A 202 61.71 39.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3968 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D6Y RELATED DB: PDB REMARK 900 RELATED ID: 3D6Z RELATED DB: PDB REMARK 900 RELATED ID: 3Q1M RELATED DB: PDB REMARK 900 RELATED ID: 3Q5P RELATED DB: PDB REMARK 900 RELATED ID: 3Q5R RELATED DB: PDB REMARK 900 RELATED ID: 3Q5S RELATED DB: PDB DBREF 3Q2Y A 1 278 UNP P39075 BMRR_BACSU 1 278 DBREF 3Q2Y B -12 12 PDB 3Q2Y 3Q2Y -12 12 SEQADV 3Q2Y LEU A 142 UNP P39075 ILE 142 CONFLICT SEQADV 3Q2Y LEU A 277 UNP P39075 ALA 277 CONFLICT SEQADV 3Q2Y ASP A 278 UNP P39075 GLU 278 CONFLICT SEQADV 3Q2Y HIS A 279 UNP P39075 EXPRESSION TAG SEQADV 3Q2Y HIS A 280 UNP P39075 EXPRESSION TAG SEQADV 3Q2Y HIS A 281 UNP P39075 EXPRESSION TAG SEQADV 3Q2Y HIS A 282 UNP P39075 EXPRESSION TAG SEQADV 3Q2Y HIS A 283 UNP P39075 EXPRESSION TAG SEQADV 3Q2Y HIS A 284 UNP P39075 EXPRESSION TAG SEQRES 1 A 284 MET LYS GLU SER TYR TYR SER ILE GLY GLU VAL SER LYS SEQRES 2 A 284 LEU ALA ASN VAL SER ILE LYS ALA LEU ARG TYR TYR ASP SEQRES 3 A 284 LYS ILE ASP LEU PHE LYS PRO ALA TYR VAL ASP PRO ASP SEQRES 4 A 284 THR SER TYR ARG TYR TYR THR ASP SER GLN LEU ILE HIS SEQRES 5 A 284 LEU ASP LEU ILE LYS SER LEU LYS TYR ILE GLY THR PRO SEQRES 6 A 284 LEU GLU GLU MET LYS LYS ALA GLN ASP LEU GLU MET GLU SEQRES 7 A 284 GLU LEU PHE ALA PHE TYR THR GLU GLN GLU ARG GLN ILE SEQRES 8 A 284 ARG GLU LYS LEU ASP PHE LEU SER ALA LEU GLU GLN THR SEQRES 9 A 284 ILE SER LEU VAL LYS LYS ARG MET LYS ARG GLN MET GLU SEQRES 10 A 284 TYR PRO ALA LEU GLY GLU VAL PHE VAL LEU ASP GLU GLU SEQRES 11 A 284 GLU ILE ARG ILE ILE GLN THR GLU ALA GLU GLY LEU GLY SEQRES 12 A 284 PRO GLU ASN VAL LEU ASN ALA SER TYR SER LYS LEU LYS SEQRES 13 A 284 LYS PHE ILE GLU SER ALA ASP GLY PHE THR ASN ASN SER SEQRES 14 A 284 TYR GLY ALA THR PHE SER PHE GLN PRO TYR THR SER ILE SEQRES 15 A 284 ASP GLU MET THR TYR ARG HIS ILE PHE THR PRO VAL LEU SEQRES 16 A 284 THR ASN LYS GLN ILE SER SER ILE THR PRO ASP MET GLU SEQRES 17 A 284 ILE THR THR ILE PRO LYS GLY ARG TYR ALA CYS ILE ALA SEQRES 18 A 284 TYR ASN PHE SER PRO GLU HIS TYR PHE LEU ASN LEU GLN SEQRES 19 A 284 LYS LEU ILE LYS TYR ILE ALA ASP ARG GLN LEU THR VAL SEQRES 20 A 284 VAL SER ASP VAL TYR GLU LEU ILE ILE PRO ILE HIS TYR SEQRES 21 A 284 SER PRO LYS LYS GLN GLU GLU TYR ARG VAL GLU MET LYS SEQRES 22 A 284 ILE ARG ILE LEU ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 23 DG DA DC DC DC DT DC DC DC DC DT DT DA SEQRES 2 B 23 DG DG DG DG DA DG DG DG DT DC HET ET A 285 24 HET GOL A3968 6 HET GOL B3968 6 HETNAM ET ETHIDIUM HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ET C21 H20 N3 1+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *15(H2 O) HELIX 1 1 ILE A 8 ASN A 16 1 9 HELIX 2 2 SER A 18 ILE A 28 1 11 HELIX 3 3 ASP A 47 LEU A 50 5 4 HELIX 4 4 ILE A 51 GLY A 63 1 13 HELIX 5 5 PRO A 65 GLN A 73 1 9 HELIX 6 6 GLU A 76 GLN A 115 1 40 HELIX 7 7 LEU A 148 GLY A 164 1 17 HELIX 8 8 SER A 225 ARG A 243 1 19 SHEET 1 A 3 TYR A 6 SER A 7 0 SHEET 2 A 3 ARG A 43 TYR A 45 -1 O TYR A 45 N TYR A 6 SHEET 3 A 3 TYR A 35 VAL A 36 -1 N TYR A 35 O TYR A 44 SHEET 1 B 8 VAL A 124 GLU A 129 0 SHEET 2 B 8 GLY A 215 ASN A 223 -1 O CYS A 219 N PHE A 125 SHEET 3 B 8 TYR A 268 ILE A 276 -1 O VAL A 270 N TYR A 222 SHEET 4 B 8 VAL A 247 PRO A 257 -1 N VAL A 248 O ARG A 275 SHEET 5 B 8 TYR A 170 PHE A 174 -1 N ALA A 172 O GLU A 253 SHEET 6 B 8 HIS A 189 PRO A 193 -1 O HIS A 189 N THR A 173 SHEET 7 B 8 ILE A 132 GLU A 138 -1 N ILE A 135 O THR A 192 SHEET 8 B 8 MET A 207 ILE A 212 -1 O THR A 210 N ILE A 134 SITE 1 AC1 8 ASN A 149 TYR A 152 TYR A 170 TYR A 187 SITE 2 AC1 8 PHE A 224 GLU A 253 ILE A 255 GLU A 266 SITE 1 AC2 9 SER A 175 PHE A 176 GLN A 177 ARG A 188 SITE 2 AC2 9 ILE A 203 GLU A 208 ILE A 209 SER A 249 SITE 3 AC2 9 ASP A 250 SITE 1 AC3 1 DG B -12 CRYST1 106.600 106.600 145.740 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006862 0.00000