HEADER TRANSCRIPTION REGULATOR/DNA/ANTIBIOTIC 21-DEC-10 3Q3D TITLE CRYSTAL STRUCTURE OF BMRR BOUND TO PUROMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIDRUG-EFFLUX TRANSPORTER 1 REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BMRR PROMOTER DNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BMRR, BMR1R, BSU24020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: 23 BP PROMOTER OF BMR EFFLUX PUMP GENE SYNTHESIZED BY SOURCE 10 IDT KEYWDS PROTEIN-DNA COMPLEX, MULTI-DRUG BINDING, ANTIBIOTIC, TRANSCRIPTION KEYWDS 2 REGULATOR, TRANSCRIPTION REGULATOR-DNA-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BACHAS,C.EGINTON,G.GUNIO,H.WADE REVDAT 6 13-MAR-24 3Q3D 1 SOURCE REVDAT 5 21-FEB-24 3Q3D 1 REMARK SEQADV REVDAT 4 17-JUL-19 3Q3D 1 REMARK REVDAT 3 20-JUL-11 3Q3D 1 JRNL REVDAT 2 22-JUN-11 3Q3D 1 JRNL REVDAT 1 15-JUN-11 3Q3D 0 JRNL AUTH S.BACHAS,C.EGINTON,D.GUNIO,H.WADE JRNL TITL STRUCTURAL CONTRIBUTIONS TO MULTIDRUG RECOGNITION IN THE JRNL TITL 2 MULTIDRUG RESISTANCE (MDR) GENE REGULATOR, BMRR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 11046 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21690368 JRNL DOI 10.1073/PNAS.1104850108 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 17049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2195 REMARK 3 NUCLEIC ACID ATOMS : 468 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2824 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3926 ; 1.816 ; 2.205 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 7.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;36.101 ;24.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;19.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.458 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1963 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 0.775 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 1.549 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1435 ; 2.551 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1680 ; 4.310 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8040 -11.4350 20.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.3384 T22: 0.2903 REMARK 3 T33: 0.3583 T12: 0.0773 REMARK 3 T13: 0.0030 T23: -0.0976 REMARK 3 L TENSOR REMARK 3 L11: 4.4668 L22: 2.8459 REMARK 3 L33: 2.6027 L12: 2.2741 REMARK 3 L13: 1.2407 L23: 1.2692 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: 0.1139 S13: 0.2801 REMARK 3 S21: -0.0494 S22: -0.2060 S23: 0.1380 REMARK 3 S31: -0.1922 S32: -0.1059 S33: 0.1295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2000 7.0700 52.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.4099 T22: 0.4135 REMARK 3 T33: 0.5333 T12: 0.1416 REMARK 3 T13: -0.0266 T23: -0.1586 REMARK 3 L TENSOR REMARK 3 L11: 5.3976 L22: 6.4181 REMARK 3 L33: 47.0912 L12: 4.3651 REMARK 3 L13: 11.4833 L23: 2.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.3275 S12: -0.3559 S13: 0.1763 REMARK 3 S21: 0.1909 S22: -0.0697 S23: -0.2124 REMARK 3 S31: -1.7646 S32: 0.1856 S33: 0.3972 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 67.4380 22.9150 61.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.2069 REMARK 3 T33: 0.4017 T12: -0.1525 REMARK 3 T13: 0.1084 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 5.3926 L22: 2.2563 REMARK 3 L33: 6.8677 L12: 1.1446 REMARK 3 L13: 0.8463 L23: 0.7831 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: -0.1989 S13: -0.0834 REMARK 3 S21: -0.0928 S22: -0.0532 S23: -0.2650 REMARK 3 S31: 0.2249 S32: 0.0899 S33: -0.0423 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 62.2260 17.6400 48.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.7747 T22: 0.6451 REMARK 3 T33: 1.2126 T12: 0.2049 REMARK 3 T13: 0.3436 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 4.9569 L22: 14.3058 REMARK 3 L33: 10.2384 L12: 6.5308 REMARK 3 L13: 6.8479 L23: 11.1273 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.1785 S13: -0.8901 REMARK 3 S21: 1.0008 S22: 0.5120 S23: 1.2206 REMARK 3 S31: 0.3638 S32: 0.3920 S33: -0.4369 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5120 28.4370 59.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.2148 T22: 0.2619 REMARK 3 T33: 0.3915 T12: -0.0325 REMARK 3 T13: 0.0486 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.6861 L22: 3.3235 REMARK 3 L33: 3.1022 L12: 0.2171 REMARK 3 L13: 1.1087 L23: -0.9159 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.1008 S13: -0.0124 REMARK 3 S21: -0.1773 S22: -0.0444 S23: -0.0997 REMARK 3 S31: 0.1228 S32: 0.0799 S33: -0.0256 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 69.8060 21.7170 67.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.2768 REMARK 3 T33: 0.4101 T12: 0.0447 REMARK 3 T13: 0.0229 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.4038 L22: 1.6950 REMARK 3 L33: 4.0235 L12: 1.2727 REMARK 3 L13: 0.3131 L23: -0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.2998 S13: -0.2991 REMARK 3 S21: 0.1900 S22: -0.2809 S23: -0.2335 REMARK 3 S31: 0.2162 S32: 0.1627 S33: 0.2006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.785 REMARK 200 RESOLUTION RANGE LOW (A) : 35.841 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM MALONATE ) 0.05% REMARK 280 JEFFAMINE-M600 PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.70150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.05225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.35075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.70150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.35075 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.05225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.70150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 PHE A 125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 GLN A 244 CG CD OE1 NE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 157 O HOH A 297 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B -9 O3' DC B -9 C3' -0.049 REMARK 500 DC B -8 O3' DC B -8 C3' -0.041 REMARK 500 DC B -3 O3' DT B -2 P -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B -12 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DA B -11 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B -9 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC B -9 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC B -9 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC B -6 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC B -6 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DC B -5 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B -4 O4' - C1' - N1 ANGL. DEV. = 10.0 DEGREES REMARK 500 DC B -4 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC B -3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B -2 O3' - P - O5' ANGL. DEV. = -12.9 DEGREES REMARK 500 DA B 2 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG B 3 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG B 6 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 9.8 DEGREES REMARK 500 DG B 10 O5' - C5' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT B 11 C4 - C5 - C7 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 178 64.13 -67.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUY A 6409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D6Y RELATED DB: PDB REMARK 900 RELATED ID: 3D6Z RELATED DB: PDB DBREF 3Q3D A 1 278 UNP P39075 BMRR_BACSU 1 278 DBREF 3Q3D B -12 12 PDB 3Q3D 3Q3D -12 12 SEQADV 3Q3D LEU A 142 UNP P39075 ILE 142 CONFLICT SEQADV 3Q3D LEU A 277 UNP P39075 ALA 277 CONFLICT SEQADV 3Q3D ASP A 278 UNP P39075 GLU 278 CONFLICT SEQADV 3Q3D HIS A 279 UNP P39075 EXPRESSION TAG SEQADV 3Q3D HIS A 280 UNP P39075 EXPRESSION TAG SEQADV 3Q3D HIS A 281 UNP P39075 EXPRESSION TAG SEQADV 3Q3D HIS A 282 UNP P39075 EXPRESSION TAG SEQADV 3Q3D HIS A 283 UNP P39075 EXPRESSION TAG SEQADV 3Q3D HIS A 284 UNP P39075 EXPRESSION TAG SEQRES 1 A 284 MET LYS GLU SER TYR TYR SER ILE GLY GLU VAL SER LYS SEQRES 2 A 284 LEU ALA ASN VAL SER ILE LYS ALA LEU ARG TYR TYR ASP SEQRES 3 A 284 LYS ILE ASP LEU PHE LYS PRO ALA TYR VAL ASP PRO ASP SEQRES 4 A 284 THR SER TYR ARG TYR TYR THR ASP SER GLN LEU ILE HIS SEQRES 5 A 284 LEU ASP LEU ILE LYS SER LEU LYS TYR ILE GLY THR PRO SEQRES 6 A 284 LEU GLU GLU MET LYS LYS ALA GLN ASP LEU GLU MET GLU SEQRES 7 A 284 GLU LEU PHE ALA PHE TYR THR GLU GLN GLU ARG GLN ILE SEQRES 8 A 284 ARG GLU LYS LEU ASP PHE LEU SER ALA LEU GLU GLN THR SEQRES 9 A 284 ILE SER LEU VAL LYS LYS ARG MET LYS ARG GLN MET GLU SEQRES 10 A 284 TYR PRO ALA LEU GLY GLU VAL PHE VAL LEU ASP GLU GLU SEQRES 11 A 284 GLU ILE ARG ILE ILE GLN THR GLU ALA GLU GLY LEU GLY SEQRES 12 A 284 PRO GLU ASN VAL LEU ASN ALA SER TYR SER LYS LEU LYS SEQRES 13 A 284 LYS PHE ILE GLU SER ALA ASP GLY PHE THR ASN ASN SER SEQRES 14 A 284 TYR GLY ALA THR PHE SER PHE GLN PRO TYR THR SER ILE SEQRES 15 A 284 ASP GLU MET THR TYR ARG HIS ILE PHE THR PRO VAL LEU SEQRES 16 A 284 THR ASN LYS GLN ILE SER SER ILE THR PRO ASP MET GLU SEQRES 17 A 284 ILE THR THR ILE PRO LYS GLY ARG TYR ALA CYS ILE ALA SEQRES 18 A 284 TYR ASN PHE SER PRO GLU HIS TYR PHE LEU ASN LEU GLN SEQRES 19 A 284 LYS LEU ILE LYS TYR ILE ALA ASP ARG GLN LEU THR VAL SEQRES 20 A 284 VAL SER ASP VAL TYR GLU LEU ILE ILE PRO ILE HIS TYR SEQRES 21 A 284 SER PRO LYS LYS GLN GLU GLU TYR ARG VAL GLU MET LYS SEQRES 22 A 284 ILE ARG ILE LEU ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 23 DG DA DC DC DC DT DC DC DC DC DT DT DA SEQRES 2 B 23 DG DG DG DG DA DG DG DG DT DC HET PUY A6409 34 HETNAM PUY PUROMYCIN FORMUL 3 PUY C22 H29 N7 O5 FORMUL 4 HOH *28(H2 O) HELIX 1 1 ILE A 8 ASN A 16 1 9 HELIX 2 2 SER A 18 ILE A 28 1 11 HELIX 3 3 SER A 48 LEU A 50 5 3 HELIX 4 4 ILE A 51 GLY A 63 1 13 HELIX 5 5 PRO A 65 LEU A 75 1 11 HELIX 6 6 GLU A 76 GLU A 117 1 42 HELIX 7 7 ASN A 149 SER A 151 5 3 HELIX 8 8 TYR A 152 GLY A 164 1 13 HELIX 9 9 SER A 181 MET A 185 5 5 HELIX 10 10 SER A 225 ARG A 243 1 19 SHEET 1 A 3 TYR A 6 SER A 7 0 SHEET 2 A 3 ARG A 43 TYR A 45 -1 O TYR A 45 N TYR A 6 SHEET 3 A 3 TYR A 35 VAL A 36 -1 N TYR A 35 O TYR A 44 SHEET 1 B 8 VAL A 124 GLU A 129 0 SHEET 2 B 8 GLY A 215 ASN A 223 -1 O CYS A 219 N PHE A 125 SHEET 3 B 8 TYR A 268 ILE A 276 -1 O VAL A 270 N TYR A 222 SHEET 4 B 8 VAL A 247 PRO A 257 -1 N ILE A 256 O ARG A 269 SHEET 5 B 8 TYR A 170 PHE A 174 -1 N ALA A 172 O GLU A 253 SHEET 6 B 8 HIS A 189 PRO A 193 -1 O HIS A 189 N THR A 173 SHEET 7 B 8 ILE A 132 GLU A 138 -1 N ILE A 135 O THR A 192 SHEET 8 B 8 MET A 207 ILE A 212 -1 O THR A 210 N ILE A 134 SITE 1 AC1 10 PRO A 144 VAL A 147 ASN A 149 TYR A 152 SITE 2 AC1 10 TYR A 170 ILE A 182 TYR A 187 GLU A 253 SITE 3 AC1 10 ILE A 255 TYR A 268 CRYST1 106.486 106.486 145.403 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006877 0.00000