HEADER HYDROLASE 24-DEC-10 3Q4W TITLE THE STRUCTURE OF ARCHAEAL INORGANIC PYROPHOSPHATASE IN COMPLEX WITH TITLE 2 SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TT-IPPASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 STRAIN: OGL-20; SOURCE 5 GENE: TT-IPPASE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS INORGANIC PYROPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.C.HUGHES,E.J.MEEHAN,L.COATES,J.D.NG REVDAT 6 13-SEP-23 3Q4W 1 REMARK LINK REVDAT 5 24-JAN-18 3Q4W 1 AUTHOR REMARK REVDAT 4 17-SEP-14 3Q4W 1 JRNL REVDAT 3 29-FEB-12 3Q4W 1 JRNL REVDAT 2 11-JAN-12 3Q4W 1 EXPDTA REMARK REVDAT 1 04-JAN-12 3Q4W 0 JRNL AUTH R.C.HUGHES,L.COATES,M.P.BLAKELEY,S.J.TOMANICEK,P.LANGAN, JRNL AUTH 2 A.Y.KOVALEVSKY,J.M.GARCIA-RUIZ,J.D.NG JRNL TITL INORGANIC PYROPHOSPHATASE CRYSTALS FROM THERMOCOCCUS JRNL TITL 2 THIOREDUCENS FOR X-RAY AND NEUTRON DIFFRACTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1482 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23192028 JRNL DOI 10.1107/S1744309112032447 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 32853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8866 - 3.1024 0.90 3069 141 0.1233 0.1315 REMARK 3 2 3.1024 - 2.4629 0.93 3059 175 0.0906 0.1119 REMARK 3 3 2.4629 - 2.1517 0.95 3129 147 0.0902 0.1191 REMARK 3 4 2.1517 - 1.9550 0.96 3109 168 0.0898 0.1374 REMARK 3 5 1.9550 - 1.8149 0.97 3135 177 0.0815 0.1254 REMARK 3 6 1.8149 - 1.7079 0.97 3172 161 0.0793 0.1146 REMARK 3 7 1.7079 - 1.6224 0.98 3116 194 0.0917 0.1370 REMARK 3 8 1.6224 - 1.5517 0.98 3187 168 0.1253 0.1974 REMARK 3 9 1.5517 - 1.4920 0.98 3185 174 0.1871 0.2481 REMARK 3 10 1.4920 - 1.4405 0.94 3033 154 0.2867 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 61.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49170 REMARK 3 B22 (A**2) : -1.49170 REMARK 3 B33 (A**2) : 2.98340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 1714 REMARK 3 ANGLE : 1.253 2386 REMARK 3 CHIRALITY : 0.072 233 REMARK 3 PLANARITY : 0.006 310 REMARK 3 DIHEDRAL : 14.791 676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, CALCIUM CHLORIDE, SODIUM REMARK 280 PYROPHOSPHATE, SODIUM ACETATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.02300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.88079 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.90367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.02300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.88079 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.90367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.02300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.88079 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.90367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.02300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.88079 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.90367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.02300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.88079 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.90367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.02300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.88079 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.90367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.76159 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.80733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.76159 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.80733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.76159 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 65.80733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.76159 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.80733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.76159 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 65.80733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.76159 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 65.80733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -365.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 229 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 240 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 400 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 333 O HOH A 401 12555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 57.40 -152.11 REMARK 500 GLU A 12 59.25 -154.18 REMARK 500 ASP A 103 52.57 -148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 235 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 225 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD2 REMARK 620 2 ASP A 71 OD1 153.0 REMARK 620 3 ASP A 71 OD2 150.4 50.8 REMARK 620 4 ASP A 103 OD1 77.2 76.5 114.1 REMARK 620 5 ASP A 103 OD2 80.0 78.6 128.8 49.8 REMARK 620 6 HOH A 189 O 80.4 99.8 75.8 78.1 127.1 REMARK 620 7 POP A 227 O2 94.9 93.6 101.1 121.0 71.3 159.0 REMARK 620 8 HOH A 228 O 86.3 120.7 74.8 158.6 140.5 86.0 73.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 284 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD2 REMARK 620 2 HOH A 280 O 90.5 REMARK 620 3 HOH A 281 O 107.3 123.3 REMARK 620 4 HOH A 448 O 68.8 75.3 63.4 REMARK 620 5 HOH A 450 O 54.5 114.5 53.0 42.6 REMARK 620 6 HOH A 451 O 157.0 81.1 61.6 88.3 109.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 284 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD2 REMARK 620 2 HOH A 280 O 73.3 REMARK 620 3 HOH A 281 O 101.3 120.6 REMARK 620 4 HOH A 448 O 57.1 64.3 64.3 REMARK 620 5 HOH A 450 O 46.3 96.7 55.0 38.1 REMARK 620 6 HOH A 451 O 144.2 81.3 70.4 89.4 114.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 283 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD2 REMARK 620 2 POP A 227 O3 95.5 REMARK 620 3 HOH A 228 O 82.4 75.3 REMARK 620 4 HOH A 292 O 92.1 156.0 83.2 REMARK 620 5 HOH A 317 O 165.0 81.1 110.5 96.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 224 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 103 OD2 108.6 REMARK 620 3 HOH A 205 O 87.7 87.3 REMARK 620 4 POP A 227 O6 87.4 163.2 88.3 REMARK 620 5 POP A 227 O2 168.5 79.6 84.6 83.8 REMARK 620 6 HOH A 302 O 94.4 84.3 171.5 100.0 94.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 284 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I98 RELATED DB: PDB REMARK 900 RELATED ID: 3Q3L RELATED DB: PDB REMARK 900 RELATED ID: 3Q46 RELATED DB: PDB REMARK 900 RELATED ID: 3Q5V RELATED DB: PDB REMARK 900 RELATED ID: 3Q9M RELATED DB: PDB DBREF 3Q4W A 1 178 PDB 3Q4W 3Q4W 1 178 SEQRES 1 A 178 MET ASN PRO PHE HIS GLU LEU GLU PRO GLY PRO GLU VAL SEQRES 2 A 178 PRO GLU VAL VAL TYR ALA LEU ILE GLU ILE PRO LYS GLY SEQRES 3 A 178 SER ARG ASN LYS TYR GLU LEU ASP LYS LYS THR GLY LEU SEQRES 4 A 178 LEU LYS LEU ASP ARG VAL LEU TYR SER PRO PHE PHE TYR SEQRES 5 A 178 PRO VAL ASP TYR GLY ILE ILE PRO GLN THR TRP TYR ASP SEQRES 6 A 178 ASP GLY ASP PRO PHE ASP ILE MET VAL ILE MET ARG GLU SEQRES 7 A 178 PRO VAL TYR PRO LEU THR ILE ILE GLU ALA ARG PRO ILE SEQRES 8 A 178 GLY ILE MET LYS MET GLU ASP SER GLY ASP LYS ASP TRP SEQRES 9 A 178 LYS VAL LEU ALA VAL PRO VAL GLU ASP PRO TYR PHE ASN SEQRES 10 A 178 ASP TRP LYS ASP ILE SER ASP VAL PRO LYS ALA PHE LEU SEQRES 11 A 178 ASP GLU ILE ALA HIS PHE PHE GLN ARG TYR LYS GLU LEU SEQRES 12 A 178 GLN GLY LYS THR THR LYS ILE GLU GLY TRP GLY ASN ALA SEQRES 13 A 178 GLU GLU ALA LYS ARG GLU ILE LEU ARG ALA ILE GLU MET SEQRES 14 A 178 TYR LYS GLU LYS PHE GLY LYS GLU GLU HET CA A 224 1 HET CA A 225 1 HET POP A 227 9 HET BR A 279 1 HET NA A 283 1 HET CA A 284 2 HETNAM CA CALCIUM ION HETNAM POP PYROPHOSPHATE 2- HETNAM BR BROMIDE ION HETNAM NA SODIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 4 POP H2 O7 P2 2- FORMUL 5 BR BR 1- FORMUL 6 NA NA 1+ FORMUL 8 HOH *262(H2 O) HELIX 1 1 ASN A 2 LEU A 7 1 6 HELIX 2 2 ASP A 113 ASN A 117 5 5 HELIX 3 3 ASP A 121 VAL A 125 5 5 HELIX 4 4 PRO A 126 TYR A 140 1 15 HELIX 5 5 LYS A 141 GLY A 145 5 5 HELIX 6 6 ALA A 156 PHE A 174 1 19 SHEET 1 A 8 ASP A 101 LYS A 102 0 SHEET 2 A 8 THR A 148 ASN A 155 0 SHEET 3 A 8 VAL A 17 ILE A 23 0 SHEET 4 A 8 ASP A 55 ILE A 58 -1 O ILE A 58 N LEU A 20 SHEET 5 A 8 ASP A 71 VAL A 74 -1 O VAL A 74 N ASP A 55 SHEET 6 A 8 LYS A 105 PRO A 110 1 O VAL A 106 N MET A 73 SHEET 7 A 8 ILE A 85 ASP A 98 -1 N ILE A 91 O LEU A 107 SHEET 8 A 8 THR A 148 ASN A 155 -1 O GLY A 152 N LYS A 95 SHEET 1 B 2 ASN A 29 LEU A 33 0 SHEET 2 B 2 LEU A 40 VAL A 45 -1 O ARG A 44 N LYS A 30 LINK OD2 ASP A 66 CA CA A 225 1555 1555 2.41 LINK OD2 ASP A 68 CA A CA A 284 1555 1555 2.53 LINK OD2 ASP A 68 CA B CA A 284 1555 1555 3.07 LINK OD1 ASP A 71 CA CA A 225 1555 1555 2.39 LINK OD2 ASP A 71 CA CA A 225 1555 1555 2.68 LINK OD2 ASP A 71 NA NA A 283 1555 1555 2.54 LINK OD2 ASP A 98 CA CA A 224 1555 1555 2.24 LINK OD2 ASP A 103 CA CA A 224 1555 1555 2.30 LINK OD1 ASP A 103 CA CA A 225 1555 1555 2.45 LINK OD2 ASP A 103 CA CA A 225 1555 1555 2.70 LINK O HOH A 189 CA CA A 225 1555 1555 2.38 LINK O HOH A 205 CA CA A 224 1555 1555 2.47 LINK CA CA A 224 O6 POP A 227 1555 1555 2.25 LINK CA CA A 224 O2 POP A 227 1555 1555 2.37 LINK CA CA A 224 O HOH A 302 1555 1555 2.33 LINK CA CA A 225 O2 POP A 227 1555 1555 2.42 LINK CA CA A 225 O HOH A 228 1555 1555 2.49 LINK O3 POP A 227 NA NA A 283 1555 1555 2.36 LINK O HOH A 228 NA NA A 283 1555 1555 2.21 LINK O HOH A 280 CA A CA A 284 1555 1555 2.36 LINK O HOH A 280 CA B CA A 284 1555 1555 2.74 LINK O HOH A 281 CA B CA A 284 1555 1555 2.87 LINK O HOH A 281 CA A CA A 284 1555 1555 3.15 LINK NA NA A 283 O HOH A 292 1555 1555 1.96 LINK NA NA A 283 O HOH A 317 1555 1555 2.51 LINK CA A CA A 284 O HOH A 448 1555 1555 2.42 LINK CA B CA A 284 O HOH A 448 1555 1555 2.75 LINK CA A CA A 284 O HOH A 450 1555 1555 2.50 LINK CA B CA A 284 O HOH A 450 1555 1555 2.74 LINK CA B CA A 284 O HOH A 451 1555 1555 2.34 LINK CA A CA A 284 O HOH A 451 1555 1555 2.72 CISPEP 1 VAL A 13 PRO A 14 0 1.93 SITE 1 AC1 5 ASP A 98 ASP A 103 HOH A 205 POP A 227 SITE 2 AC1 5 HOH A 302 SITE 1 AC2 6 ASP A 66 ASP A 71 ASP A 103 HOH A 189 SITE 2 AC2 6 POP A 227 HOH A 228 SITE 1 AC3 19 LYS A 30 ARG A 44 TYR A 56 ASP A 66 SITE 2 AC3 19 ASP A 71 ASP A 98 ASP A 103 TYR A 140 SITE 3 AC3 19 LYS A 141 HOH A 205 CA A 224 CA A 225 SITE 4 AC3 19 HOH A 228 HOH A 230 BR A 279 HOH A 281 SITE 5 AC3 19 NA A 283 CA A 284 HOH A 345 SITE 1 AC4 7 GLU A 22 TYR A 56 GLY A 57 ASP A 71 SITE 2 AC4 7 POP A 227 NA A 283 HOH A 317 SITE 1 AC5 6 ASP A 71 POP A 227 HOH A 228 BR A 279 SITE 2 AC5 6 HOH A 292 HOH A 317 SITE 1 AC6 8 ASP A 66 ASP A 68 POP A 227 HOH A 280 SITE 2 AC6 8 HOH A 281 HOH A 448 HOH A 450 HOH A 451 CRYST1 100.046 100.046 98.711 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009995 0.005771 0.000000 0.00000 SCALE2 0.000000 0.011542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010131 0.00000