HEADER VIRAL PROTEIN 03-JAN-11 3Q6Q TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN TITLE 2 COMPLEX WITH DISORDERED HBGA TYPE LEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 225-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: VIETNAM 026; SOURCE 5 GENE: CAPSID PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, P-DOMAIN, CAPSID, RECEPTOR, HISTO BLOOD GROUP ANTIGEN KEYWDS 2 (HBGA), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,C.BIERTUMPFEL,L.CHEN,I.GEORGIEV,J.S.MCLELLAN,K.KATAYAMA, AUTHOR 2 P.D.KWONG REVDAT 3 13-SEP-23 3Q6Q 1 REMARK SEQADV REVDAT 2 02-NOV-11 3Q6Q 1 JRNL VERSN REVDAT 1 11-MAY-11 3Q6Q 0 JRNL AUTH G.S.HANSMAN,C.BIERTUMPFEL,I.GEORGIEV,J.S.MCLELLAN,L.CHEN, JRNL AUTH 2 T.ZHOU,K.KATAYAMA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF GII.10 AND GII.12 NOROVIRUS PROTRUDING JRNL TITL 2 DOMAINS IN COMPLEX WITH HISTO-BLOOD GROUP ANTIGENS REVEAL JRNL TITL 3 DETAILS FOR A POTENTIAL SITE OF VULNERABILITY. JRNL REF J.VIROL. V. 85 6687 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21525337 JRNL DOI 10.1128/JVI.00246-11 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 123157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9765 - 4.4382 0.99 4120 203 0.1694 0.1771 REMARK 3 2 4.4382 - 3.5247 0.99 4022 224 0.1471 0.1478 REMARK 3 3 3.5247 - 3.0797 0.98 4012 190 0.1641 0.1768 REMARK 3 4 3.0797 - 2.7984 0.98 4002 195 0.1724 0.1880 REMARK 3 5 2.7984 - 2.5980 0.98 3985 215 0.1745 0.1861 REMARK 3 6 2.5980 - 2.4449 0.98 3955 199 0.1677 0.1697 REMARK 3 7 2.4449 - 2.3225 0.98 3935 216 0.1617 0.1819 REMARK 3 8 2.3225 - 2.2214 0.98 3975 223 0.1670 0.1589 REMARK 3 9 2.2214 - 2.1359 0.98 3925 211 0.1726 0.1755 REMARK 3 10 2.1359 - 2.0623 0.98 3976 181 0.1685 0.1858 REMARK 3 11 2.0623 - 1.9978 0.97 3958 198 0.1707 0.1781 REMARK 3 12 1.9978 - 1.9407 0.97 3901 199 0.1673 0.1751 REMARK 3 13 1.9407 - 1.8896 0.97 3894 232 0.1702 0.1983 REMARK 3 14 1.8896 - 1.8435 0.97 3919 204 0.1697 0.1686 REMARK 3 15 1.8435 - 1.8016 0.97 3847 205 0.1674 0.1638 REMARK 3 16 1.8016 - 1.7633 0.97 3920 214 0.1720 0.2132 REMARK 3 17 1.7633 - 1.7280 0.96 3835 201 0.1861 0.1970 REMARK 3 18 1.7280 - 1.6954 0.96 3917 180 0.1918 0.1977 REMARK 3 19 1.6954 - 1.6651 0.96 3859 217 0.2047 0.2395 REMARK 3 20 1.6651 - 1.6369 0.96 3862 219 0.2116 0.2156 REMARK 3 21 1.6369 - 1.6105 0.95 3802 215 0.2144 0.2731 REMARK 3 22 1.6105 - 1.5857 0.96 3847 215 0.2161 0.2639 REMARK 3 23 1.5857 - 1.5624 0.95 3880 187 0.2133 0.2176 REMARK 3 24 1.5624 - 1.5404 0.95 3821 195 0.2232 0.2471 REMARK 3 25 1.5404 - 1.5196 0.95 3820 200 0.2358 0.2487 REMARK 3 26 1.5196 - 1.4999 0.95 3840 206 0.2502 0.2506 REMARK 3 27 1.4999 - 1.4811 0.95 3770 217 0.2576 0.2829 REMARK 3 28 1.4811 - 1.4633 0.95 3789 219 0.2719 0.3125 REMARK 3 29 1.4633 - 1.4463 0.95 3778 216 0.2935 0.3109 REMARK 3 30 1.4463 - 1.4300 0.94 3823 172 0.3247 0.3297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 41.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05840 REMARK 3 B22 (A**2) : -1.86280 REMARK 3 B33 (A**2) : 2.92110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5091 REMARK 3 ANGLE : 0.984 6936 REMARK 3 CHIRALITY : 0.067 766 REMARK 3 PLANARITY : 0.005 918 REMARK 3 DIHEDRAL : 12.004 1823 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 224:307) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3992 7.5560 10.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0227 REMARK 3 T33: 0.0020 T12: -0.0017 REMARK 3 T13: 0.0076 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1563 L22: 0.0814 REMARK 3 L33: 0.1650 L12: 0.0477 REMARK 3 L13: 0.1499 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0572 S13: 0.0178 REMARK 3 S21: -0.0297 S22: 0.0146 S23: 0.0213 REMARK 3 S31: -0.0907 S32: 0.0616 S33: -0.0155 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 308:432) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8585 13.6193 19.3391 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.0539 REMARK 3 T33: 0.0637 T12: 0.0069 REMARK 3 T13: 0.0021 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1391 L22: 0.1583 REMARK 3 L33: 0.3887 L12: 0.0012 REMARK 3 L13: -0.1141 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.0158 S13: 0.0552 REMARK 3 S21: 0.0673 S22: 0.0416 S23: 0.0159 REMARK 3 S31: -0.1342 S32: -0.0145 S33: -0.0434 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 433:538) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8438 -2.0562 -4.3308 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.0974 REMARK 3 T33: -0.0237 T12: -0.0188 REMARK 3 T13: 0.0306 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.0352 L22: 0.1469 REMARK 3 L33: 0.0064 L12: -0.0079 REMARK 3 L13: 0.0088 L23: -0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0656 S13: -0.0338 REMARK 3 S21: -0.1349 S22: 0.0365 S23: 0.0159 REMARK 3 S31: 0.0049 S32: 0.0256 S33: -0.0092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 224:300) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2378 -5.7715 23.6592 REMARK 3 T TENSOR REMARK 3 T11: -0.0040 T22: 0.0144 REMARK 3 T33: 0.0511 T12: 0.0001 REMARK 3 T13: -0.0167 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.1309 REMARK 3 L33: 0.1575 L12: 0.0634 REMARK 3 L13: 0.1463 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0443 S13: -0.0526 REMARK 3 S21: 0.0368 S22: 0.0123 S23: -0.0762 REMARK 3 S31: 0.0265 S32: 0.0473 S33: -0.0365 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 301:434) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4102 -12.4628 27.4506 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: -0.0329 REMARK 3 T33: 0.0491 T12: 0.0115 REMARK 3 T13: -0.0333 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.4009 L22: 0.0237 REMARK 3 L33: 0.1419 L12: 0.0551 REMARK 3 L13: 0.1132 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.0232 S13: -0.1798 REMARK 3 S21: 0.0089 S22: 0.0239 S23: 0.0034 REMARK 3 S31: 0.0887 S32: -0.0271 S33: -0.0611 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 435:538) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8808 2.4719 22.5837 REMARK 3 T TENSOR REMARK 3 T11: -0.0110 T22: 0.0702 REMARK 3 T33: 0.1248 T12: -0.0045 REMARK 3 T13: -0.0086 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 0.0919 L22: 0.4878 REMARK 3 L33: 0.2968 L12: 0.0837 REMARK 3 L13: 0.1646 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.1176 S13: -0.1205 REMARK 3 S21: 0.0213 S22: 0.0438 S23: -0.2772 REMARK 3 S31: -0.0139 S32: 0.0759 S33: -0.0640 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 28.971 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 22.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.55 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65300 REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.1.4) REMARK 200 STARTING MODEL: PDB ENTRY 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 8.25% (W/V) PEG 8000, REMARK 280 1% (V/V) MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.48100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT IS ALSO BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 PRO A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 GLY B 220 REMARK 465 PRO B 221 REMARK 465 GLY B 222 REMARK 465 SER B 223 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 344 CG OD1 ND2 REMARK 470 THR B 345 OG1 CG2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 75.69 -154.77 REMARK 500 GLN A 260 50.24 -147.47 REMARK 500 THR A 291 -61.52 -95.64 REMARK 500 GLN A 384 -13.95 -145.43 REMARK 500 VAL A 529 -152.10 -117.76 REMARK 500 ASN B 252 75.04 -156.16 REMARK 500 GLN B 260 49.10 -149.24 REMARK 500 VAL B 529 -157.77 -131.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 20 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONY RELATED DB: PDB REMARK 900 RELATED ID: 3ONU RELATED DB: PDB REMARK 900 RELATED ID: 3PA1 RELATED DB: PDB REMARK 900 RELATED ID: 3PA2 RELATED DB: PDB REMARK 900 RELATED ID: 3Q6R RELATED DB: PDB REMARK 900 RELATED ID: 3Q3A RELATED DB: PDB REMARK 900 RELATED ID: 3Q39 RELATED DB: PDB REMARK 900 RELATED ID: 3Q38 RELATED DB: PDB REMARK 900 RELATED ID: 3R6K RELATED DB: PDB REMARK 900 RELATED ID: 3R6J RELATED DB: PDB DBREF 3Q6Q A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 3Q6Q B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQADV 3Q6Q GLY A 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q PRO A 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q GLY A 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q SER A 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q GLY B 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q PRO B 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q GLY B 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q6Q SER B 223 UNP Q5F4T5 EXPRESSION TAG SEQRES 1 A 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 A 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 A 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 A 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 A 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 A 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 A 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 A 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 A 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 A 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 A 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 A 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 A 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 A 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 A 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 A 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 A 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 A 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 A 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 A 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 A 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 A 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 A 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 A 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 A 319 PHE TYR THR LEU ALA PRO MET SEQRES 1 B 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 B 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 B 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 B 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 B 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 B 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 B 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 B 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 B 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 B 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 B 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 B 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 B 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 B 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 B 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 B 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 B 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 B 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 B 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 B 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 B 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 B 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 B 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 B 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 B 319 PHE TYR THR LEU ALA PRO MET HET EDO A 1 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 8 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET IMD A 17 5 HET EDO B 2 4 HET EDO B 3 4 HET EDO B 4 4 HET EDO B 15 4 HET EDO B 16 4 HET IMD B 18 5 HET IMD B 19 5 HET IMD B 20 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM IMD IMIDAZOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 16(C2 H6 O2) FORMUL 14 IMD 4(C3 H5 N2 1+) FORMUL 23 HOH *753(H2 O) HELIX 1 1 THR A 233 LEU A 237 5 5 HELIX 2 2 LEU A 279 ILE A 283 5 5 HELIX 3 3 THR A 370 LEU A 373 5 4 HELIX 4 4 ASP A 403 HIS A 407 5 5 HELIX 5 5 PRO A 462 SER A 473 1 12 HELIX 6 6 THR B 233 LEU B 237 5 5 HELIX 7 7 LEU B 279 ILE B 283 5 5 HELIX 8 8 THR B 370 LEU B 373 5 4 HELIX 9 9 ASP B 403 HIS B 407 5 5 HELIX 10 10 PRO B 462 SER B 473 1 12 SHEET 1 A 4 ALA A 456 CYS A 459 0 SHEET 2 A 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 A 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 A 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 B 6 ALA A 456 CYS A 459 0 SHEET 2 B 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 B 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 B 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 B 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 B 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 C 8 GLY B 450 TYR B 452 0 SHEET 2 C 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 C 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 C 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 C 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 C 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 C 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 C 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 D 8 GLY A 450 TYR A 452 0 SHEET 2 D 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 D 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 D 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 D 8 PHE B 286 GLN B 295 -1 N VAL B 294 O HIS B 302 SHEET 6 D 8 PRO B 391 LEU B 399 -1 O PHE B 394 N PHE B 286 SHEET 7 D 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 D 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 E 4 ALA B 456 CYS B 459 0 SHEET 2 E 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 E 4 VAL B 248 THR B 251 -1 N VAL B 248 O ARG B 443 SHEET 4 E 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 F 6 ALA B 456 CYS B 459 0 SHEET 2 F 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 F 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 F 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 F 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 F 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 SITE 1 AC1 7 HOH A 32 HOH A 37 HOH A 145 ASN A 309 SITE 2 AC1 7 LEU A 310 ASN A 311 LEU A 325 SITE 1 AC2 5 HOH A 147 HOH B 52 LEU B 279 THR B 281 SITE 2 AC2 5 ARG B 287 SITE 1 AC3 7 HOH B 12 HOH B 43 HOH B 161 ASN B 309 SITE 2 AC3 7 LEU B 310 ASN B 311 LEU B 325 SITE 1 AC4 8 HOH A 111 PHE A 445 PRO A 447 HOH B 1 SITE 2 AC4 8 HOH B 213 ARG B 287 ARG B 341 HOH B 632 SITE 1 AC5 6 HOH A 77 HOH A 116 LEU A 279 THR A 281 SITE 2 AC5 6 GLY A 282 ARG A 287 SITE 1 AC6 4 ARG A 299 GLY A 300 SER A 379 THR A 380 SITE 1 AC7 10 HOH A 31 HOH A 44 HOH A 156 HOH A 171 SITE 2 AC7 10 PRO A 243 PRO A 280 THR A 281 PRO B 243 SITE 3 AC7 10 PRO B 280 THR B 281 SITE 1 AC8 5 ASN A 342 THR A 343 THR A 345 PRO A 353 SITE 2 AC8 5 ASN B 454 SITE 1 AC9 8 HOH A 86 HOH A 192 SER A 415 THR A 421 SITE 2 AC9 8 LEU A 422 ASN A 423 HOH A 632 HOH A 688 SITE 1 BC1 3 LYS A 225 GLN A 471 GLU A 472 SITE 1 BC2 5 GLN A 277 LEU A 278 HOH B 117 GLU B 236 SITE 2 BC2 5 HOH B 722 SITE 1 BC3 7 HOH A 47 HOH A 92 HOH A 147 PRO A 245 SITE 2 BC3 7 ILE A 246 HOH A 599 HOH A 627 SITE 1 BC4 8 HOH A 40 HIS A 358 GLU A 359 HOH A 575 SITE 2 BC4 8 HOH A 697 IMD B 19 GLU B 359 LYS B 449 SITE 1 BC5 5 HOH A 133 GLU A 464 HIS A 468 HOH A 617 SITE 2 BC5 5 HOH A 708 SITE 1 BC6 6 PHE B 434 GLU B 437 ALA B 508 THR B 534 SITE 2 BC6 6 LEU B 535 HOH B 791 SITE 1 BC7 7 HOH B 63 GLU B 255 ALA B 257 ASP B 409 SITE 2 BC7 7 TRP B 411 HOH B 588 HOH B 598 SITE 1 BC8 5 LEU A 272 GLN A 273 GLY A 274 THR A 276 SITE 2 BC8 5 LEU A 325 SITE 1 BC9 5 LEU B 272 GLN B 273 GLY B 274 THR B 276 SITE 2 BC9 5 LEU B 325 SITE 1 CC1 6 EDO A 13 HIS A 358 GLU B 359 TRP B 381 SITE 2 CC1 6 LYS B 449 HOH B 787 SITE 1 CC2 5 ASP B 269 GLY B 270 SER B 473 HOH B 579 SITE 2 CC2 5 HOH B 803 CRYST1 65.150 78.962 69.243 90.00 99.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015349 0.000000 0.002616 0.00000 SCALE2 0.000000 0.012664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014650 0.00000