HEADER PROTEIN BINDING 03-JAN-11 3Q6T TITLE SALIVARY PROTEIN FROM LUTZOMYIA LONGIPALPIS, LIGAND FREE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 43.2 KDA SALIVARY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-399; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUTZOMYIA LONGIPALPIS; SOURCE 3 ORGANISM_COMMON: SAND FLY; SOURCE 4 ORGANISM_TAXID: 7200; SOURCE 5 GENE: LJM11_CLU9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS BETA PROPELLER, LIGAND BINDING, SEROTONIN, SALIVARY GLAND, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.F.ANDERSEN,X.XU,B.W.CHANG,N.COLLIN,J.G.VALENZUELA,J.M.RIBEIRO REVDAT 3 23-OCT-19 3Q6T 1 JRNL REVDAT 2 08-NOV-17 3Q6T 1 REMARK REVDAT 1 27-JUL-11 3Q6T 0 JRNL AUTH X.XU,F.OLIVEIRA,B.W.CHANG,N.COLLIN,R.GOMES,C.TEIXEIRA, JRNL AUTH 2 D.REYNOSO,V.MY PHAM,D.E.ELNAIEM,S.KAMHAWI,J.M.RIBEIRO, JRNL AUTH 3 J.G.VALENZUELA,J.F.ANDERSEN JRNL TITL STRUCTURE AND FUNCTION OF A "YELLOW" PROTEIN FROM SALIVA OF JRNL TITL 2 THE SAND FLY LUTZOMYIA LONGIPALPIS THAT CONFERS PROTECTIVE JRNL TITL 3 IMMUNITY AGAINST LEISHMANIA MAJOR INFECTION. JRNL REF J.BIOL.CHEM. V. 286 32383 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21795673 JRNL DOI 10.1074/JBC.M111.268904 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : -0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.931 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6292 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8517 ; 1.630 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 7.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;36.156 ;23.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;19.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 884 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4850 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3796 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6132 ; 1.278 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2496 ; 1.853 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2385 ; 3.172 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 381 REMARK 3 RESIDUE RANGE : A 382 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 83.0868 13.2164 31.6454 REMARK 3 T TENSOR REMARK 3 T11: 0.8134 T22: 0.2476 REMARK 3 T33: 0.3232 T12: 0.2943 REMARK 3 T13: -0.2500 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 1.7643 L22: 1.5893 REMARK 3 L33: 0.7593 L12: 0.1769 REMARK 3 L13: 0.1831 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.3243 S12: -0.0725 S13: -0.0729 REMARK 3 S21: 0.2193 S22: 0.2714 S23: -0.0812 REMARK 3 S31: -0.0095 S32: 0.0897 S33: 0.0530 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 381 REMARK 3 RESIDUE RANGE : B 382 B 382 REMARK 3 RESIDUE RANGE : B 383 B 405 REMARK 3 ORIGIN FOR THE GROUP (A): 84.0153 -30.7948 11.9927 REMARK 3 T TENSOR REMARK 3 T11: 0.8556 T22: 0.1315 REMARK 3 T33: 0.4869 T12: 0.2759 REMARK 3 T13: 0.2268 T23: 0.1146 REMARK 3 L TENSOR REMARK 3 L11: 1.0168 L22: 1.0405 REMARK 3 L33: 1.4196 L12: -0.0877 REMARK 3 L13: -0.2608 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.4594 S12: 0.0092 S13: -0.0136 REMARK 3 S21: 0.1021 S22: 0.1086 S23: -0.0441 REMARK 3 S31: 0.0965 S32: 0.0492 S33: 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 6000, 0.1M SODIUM CITRATE, 6 REMARK 280 MM NICKEL CHLORIDE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 165.41133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.70567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.41133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.70567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 165.41133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.70567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 165.41133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.70567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 303 O CYS A 377 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 230 CZ ARG B 230 NH1 -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 230 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 33.25 75.78 REMARK 500 ASN A 62 33.11 -90.84 REMARK 500 LYS A 69 40.03 -94.64 REMARK 500 SER A 112 -143.93 54.07 REMARK 500 ARG A 113 21.84 44.00 REMARK 500 TYR A 135 63.66 65.98 REMARK 500 LYS A 150 58.37 76.30 REMARK 500 LYS A 165 32.20 -96.66 REMARK 500 GLU A 204 -78.13 -94.88 REMARK 500 ILE A 222 124.42 -35.41 REMARK 500 ASP A 231 -162.34 -73.95 REMARK 500 LEU A 268 25.59 -163.76 REMARK 500 ASP A 276 129.11 -38.62 REMARK 500 SER A 321 -9.65 -59.66 REMARK 500 PHE A 325 91.72 50.16 REMARK 500 ASN A 342 -0.95 -152.66 REMARK 500 LYS A 349 13.89 83.54 REMARK 500 ALA A 373 -102.75 -11.42 REMARK 500 ALA A 376 9.79 -53.29 REMARK 500 MET A 379 -73.22 -45.98 REMARK 500 THR B 17 117.36 -36.21 REMARK 500 ASP B 96 -30.77 -39.72 REMARK 500 SER B 112 -160.42 54.42 REMARK 500 HIS B 121 150.90 176.19 REMARK 500 ARG B 140 95.02 -161.19 REMARK 500 ASN B 163 62.87 -109.55 REMARK 500 PHE B 223 -39.18 -133.56 REMARK 500 LYS B 273 125.20 -22.72 REMARK 500 ASP B 276 126.13 -35.54 REMARK 500 LYS B 312 -18.87 -48.23 REMARK 500 PHE B 325 88.57 46.34 REMARK 500 ASN B 342 0.66 -152.76 REMARK 500 LYS B 349 6.33 85.16 REMARK 500 ALA B 373 -72.85 -42.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q6K RELATED DB: PDB REMARK 900 RELATED ID: 3Q6P RELATED DB: PDB DBREF 3Q6T A 1 381 UNP Q5WPU9 Q5WPU9_LUTLO 19 399 DBREF 3Q6T B 1 381 UNP Q5WPU9 Q5WPU9_LUTLO 19 399 SEQRES 1 A 381 ALA ASP THR GLN GLY TYR LYS TRP LYS GLN LEU LEU TYR SEQRES 2 A 381 ASN ASN VAL THR PRO GLY SER TYR ASN PRO ASP ASN MET SEQRES 3 A 381 ILE SER THR ALA PHE ALA TYR ASP ALA GLU GLY GLU LYS SEQRES 4 A 381 LEU PHE LEU ALA VAL PRO ARG LYS LEU PRO ARG VAL PRO SEQRES 5 A 381 TYR THR LEU ALA GLU VAL ASP THR LYS ASN SER LEU GLY SEQRES 6 A 381 VAL LYS GLY LYS HIS SER PRO LEU LEU ASN LYS PHE SER SEQRES 7 A 381 GLY HIS LYS THR GLY LYS GLU LEU THR SER ILE TYR GLN SEQRES 8 A 381 PRO VAL ILE ASP ASP CYS ARG ARG LEU TRP VAL VAL ASP SEQRES 9 A 381 ILE GLY SER VAL GLU TYR ARG SER ARG GLY ALA LYS ASP SEQRES 10 A 381 TYR PRO SER HIS ARG PRO ALA ILE VAL ALA TYR ASP LEU SEQRES 11 A 381 LYS GLN PRO ASN TYR PRO GLU VAL VAL ARG TYR TYR PHE SEQRES 12 A 381 PRO THR ARG LEU VAL GLU LYS PRO THR TYR PHE GLY GLY SEQRES 13 A 381 PHE ALA VAL ASP VAL ALA ASN PRO LYS GLY ASP CYS SER SEQRES 14 A 381 GLU THR PHE VAL TYR ILE THR ASN PHE LEU ARG GLY ALA SEQRES 15 A 381 LEU PHE ILE TYR ASP HIS LYS LYS GLN ASP SER TRP ASN SEQRES 16 A 381 VAL THR HIS PRO THR PHE LYS ALA GLU ARG PRO THR LYS SEQRES 17 A 381 PHE ASP TYR GLY GLY LYS GLU TYR GLU PHE LYS ALA GLY SEQRES 18 A 381 ILE PHE GLY ILE THR LEU GLY ASP ARG ASP SER GLU GLY SEQRES 19 A 381 ASN ARG PRO ALA TYR TYR LEU ALA GLY SER ALA ILE LYS SEQRES 20 A 381 VAL TYR SER VAL ASN THR LYS GLU LEU LYS GLN LYS GLY SEQRES 21 A 381 GLY LYS LEU ASN PRO GLU LEU LEU GLY ASN ARG GLY LYS SEQRES 22 A 381 TYR ASN ASP ALA ILE ALA LEU ALA TYR ASP PRO LYS THR SEQRES 23 A 381 LYS VAL ILE PHE PHE ALA GLU ALA ASN THR LYS GLN VAL SEQRES 24 A 381 SER CYS TRP ASN THR GLN LYS MET PRO LEU ARG MET LYS SEQRES 25 A 381 ASN THR ASP VAL VAL TYR THR SER SER ARG PHE VAL PHE SEQRES 26 A 381 GLY THR ASP ILE SER VAL ASP SER LYS GLY GLY LEU TRP SEQRES 27 A 381 PHE MET SER ASN GLY PHE PRO PRO ILE ARG LYS SER GLU SEQRES 28 A 381 LYS PHE LYS TYR ASP PHE PRO ARG TYR ARG LEU MET ARG SEQRES 29 A 381 ILE MET ASP THR GLN GLU ALA ILE ALA GLY THR ALA CYS SEQRES 30 A 381 ASP MET ASN ALA SEQRES 1 B 381 ALA ASP THR GLN GLY TYR LYS TRP LYS GLN LEU LEU TYR SEQRES 2 B 381 ASN ASN VAL THR PRO GLY SER TYR ASN PRO ASP ASN MET SEQRES 3 B 381 ILE SER THR ALA PHE ALA TYR ASP ALA GLU GLY GLU LYS SEQRES 4 B 381 LEU PHE LEU ALA VAL PRO ARG LYS LEU PRO ARG VAL PRO SEQRES 5 B 381 TYR THR LEU ALA GLU VAL ASP THR LYS ASN SER LEU GLY SEQRES 6 B 381 VAL LYS GLY LYS HIS SER PRO LEU LEU ASN LYS PHE SER SEQRES 7 B 381 GLY HIS LYS THR GLY LYS GLU LEU THR SER ILE TYR GLN SEQRES 8 B 381 PRO VAL ILE ASP ASP CYS ARG ARG LEU TRP VAL VAL ASP SEQRES 9 B 381 ILE GLY SER VAL GLU TYR ARG SER ARG GLY ALA LYS ASP SEQRES 10 B 381 TYR PRO SER HIS ARG PRO ALA ILE VAL ALA TYR ASP LEU SEQRES 11 B 381 LYS GLN PRO ASN TYR PRO GLU VAL VAL ARG TYR TYR PHE SEQRES 12 B 381 PRO THR ARG LEU VAL GLU LYS PRO THR TYR PHE GLY GLY SEQRES 13 B 381 PHE ALA VAL ASP VAL ALA ASN PRO LYS GLY ASP CYS SER SEQRES 14 B 381 GLU THR PHE VAL TYR ILE THR ASN PHE LEU ARG GLY ALA SEQRES 15 B 381 LEU PHE ILE TYR ASP HIS LYS LYS GLN ASP SER TRP ASN SEQRES 16 B 381 VAL THR HIS PRO THR PHE LYS ALA GLU ARG PRO THR LYS SEQRES 17 B 381 PHE ASP TYR GLY GLY LYS GLU TYR GLU PHE LYS ALA GLY SEQRES 18 B 381 ILE PHE GLY ILE THR LEU GLY ASP ARG ASP SER GLU GLY SEQRES 19 B 381 ASN ARG PRO ALA TYR TYR LEU ALA GLY SER ALA ILE LYS SEQRES 20 B 381 VAL TYR SER VAL ASN THR LYS GLU LEU LYS GLN LYS GLY SEQRES 21 B 381 GLY LYS LEU ASN PRO GLU LEU LEU GLY ASN ARG GLY LYS SEQRES 22 B 381 TYR ASN ASP ALA ILE ALA LEU ALA TYR ASP PRO LYS THR SEQRES 23 B 381 LYS VAL ILE PHE PHE ALA GLU ALA ASN THR LYS GLN VAL SEQRES 24 B 381 SER CYS TRP ASN THR GLN LYS MET PRO LEU ARG MET LYS SEQRES 25 B 381 ASN THR ASP VAL VAL TYR THR SER SER ARG PHE VAL PHE SEQRES 26 B 381 GLY THR ASP ILE SER VAL ASP SER LYS GLY GLY LEU TRP SEQRES 27 B 381 PHE MET SER ASN GLY PHE PRO PRO ILE ARG LYS SER GLU SEQRES 28 B 381 LYS PHE LYS TYR ASP PHE PRO ARG TYR ARG LEU MET ARG SEQRES 29 B 381 ILE MET ASP THR GLN GLU ALA ILE ALA GLY THR ALA CYS SEQRES 30 B 381 ASP MET ASN ALA HET CIT B 382 13 HETNAM CIT CITRIC ACID FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *48(H2 O) HELIX 1 1 ASN A 22 MET A 26 5 5 HELIX 2 2 GLY A 114 TYR A 118 5 5 HELIX 3 3 PRO A 144 VAL A 148 5 5 HELIX 4 4 LYS A 150 THR A 152 5 3 HELIX 5 5 PRO A 199 LYS A 202 5 4 HELIX 6 6 THR A 253 LYS A 257 1 5 HELIX 7 7 ARG A 310 LYS A 312 5 3 HELIX 8 8 LYS A 349 PHE A 353 5 5 HELIX 9 9 ASP A 367 ALA A 373 1 7 HELIX 10 10 ASN B 22 MET B 26 5 5 HELIX 11 11 GLY B 114 TYR B 118 5 5 HELIX 12 12 PRO B 144 VAL B 148 5 5 HELIX 13 13 LYS B 150 THR B 152 5 3 HELIX 14 14 HIS B 198 LYS B 202 5 5 HELIX 15 15 THR B 253 GLN B 258 1 6 HELIX 16 16 ARG B 310 LYS B 312 5 3 HELIX 17 17 LYS B 349 PHE B 353 5 5 HELIX 18 18 ASP B 367 ALA B 373 1 7 SHEET 1 A 4 THR A 3 TRP A 8 0 SHEET 2 A 4 TYR A 360 ILE A 365 -1 O TYR A 360 N TRP A 8 SHEET 3 A 4 LEU A 337 SER A 341 -1 N LEU A 337 O ILE A 365 SHEET 4 A 4 GLY A 326 VAL A 331 -1 N THR A 327 O MET A 340 SHEET 1 B 4 ALA A 30 ASP A 34 0 SHEET 2 B 4 LYS A 39 ALA A 43 -1 O LYS A 39 N ASP A 34 SHEET 3 B 4 LEU A 55 ASP A 59 -1 O ALA A 56 N LEU A 42 SHEET 4 B 4 ASN A 75 LYS A 76 -1 O ASN A 75 N GLU A 57 SHEET 1 C 4 ILE A 89 ILE A 94 0 SHEET 2 C 4 ARG A 99 ASP A 104 -1 O TRP A 101 N VAL A 93 SHEET 3 C 4 ALA A 124 ASP A 129 -1 O TYR A 128 N LEU A 100 SHEET 4 C 4 GLU A 137 TYR A 142 -1 O TYR A 141 N ILE A 125 SHEET 1 D 4 PHE A 154 VAL A 161 0 SHEET 2 D 4 THR A 171 ASN A 177 -1 O PHE A 172 N ASP A 160 SHEET 3 D 4 ALA A 182 ASP A 187 -1 O PHE A 184 N ILE A 175 SHEET 4 D 4 ASP A 192 THR A 197 -1 O ASP A 192 N ASP A 187 SHEET 1 E 2 THR A 207 TYR A 211 0 SHEET 2 E 2 LYS A 214 PHE A 218 -1 O PHE A 218 N THR A 207 SHEET 1 F 4 ILE A 222 LEU A 227 0 SHEET 2 F 4 PRO A 237 ALA A 242 -1 O TYR A 239 N THR A 226 SHEET 3 F 4 LYS A 247 ASN A 252 -1 O VAL A 251 N ALA A 238 SHEET 4 F 4 GLU A 266 ASN A 270 -1 O GLU A 266 N SER A 250 SHEET 1 G 4 ALA A 277 TYR A 282 0 SHEET 2 G 4 VAL A 288 GLU A 293 -1 O PHE A 290 N ALA A 281 SHEET 3 G 4 GLN A 298 ASN A 303 -1 O SER A 300 N PHE A 291 SHEET 4 G 4 THR A 314 THR A 319 -1 O VAL A 317 N VAL A 299 SHEET 1 H 4 GLN B 4 TRP B 8 0 SHEET 2 H 4 TYR B 360 ILE B 365 -1 O LEU B 362 N TYR B 6 SHEET 3 H 4 LEU B 337 SER B 341 -1 N SER B 341 O ARG B 361 SHEET 4 H 4 GLY B 326 VAL B 331 -1 N THR B 327 O MET B 340 SHEET 1 I 4 ALA B 30 ASP B 34 0 SHEET 2 I 4 LYS B 39 ALA B 43 -1 O PHE B 41 N ALA B 32 SHEET 3 I 4 LEU B 55 ASP B 59 -1 O VAL B 58 N LEU B 40 SHEET 4 I 4 ASN B 75 LYS B 76 -1 O ASN B 75 N GLU B 57 SHEET 1 J 4 VAL B 93 ILE B 94 0 SHEET 2 J 4 ARG B 99 ASP B 104 -1 O TRP B 101 N VAL B 93 SHEET 3 J 4 ALA B 124 ASP B 129 -1 O TYR B 128 N LEU B 100 SHEET 4 J 4 GLU B 137 TYR B 142 -1 O VAL B 138 N ALA B 127 SHEET 1 K 4 PHE B 154 VAL B 161 0 SHEET 2 K 4 THR B 171 ASN B 177 -1 O PHE B 172 N ASP B 160 SHEET 3 K 4 ALA B 182 ASP B 187 -1 O PHE B 184 N ILE B 175 SHEET 4 K 4 ASP B 192 VAL B 196 -1 O ASP B 192 N ASP B 187 SHEET 1 L 2 THR B 207 TYR B 211 0 SHEET 2 L 2 LYS B 214 PHE B 218 -1 O PHE B 218 N THR B 207 SHEET 1 M 4 ILE B 222 LEU B 227 0 SHEET 2 M 4 PRO B 237 ALA B 242 -1 O TYR B 239 N THR B 226 SHEET 3 M 4 LYS B 247 ASN B 252 -1 O TYR B 249 N TYR B 240 SHEET 4 M 4 GLU B 266 ASN B 270 -1 O GLU B 266 N SER B 250 SHEET 1 N 4 ALA B 277 ASP B 283 0 SHEET 2 N 4 VAL B 288 GLU B 293 -1 O VAL B 288 N ASP B 283 SHEET 3 N 4 GLN B 298 ASN B 303 -1 O SER B 300 N PHE B 291 SHEET 4 N 4 THR B 314 THR B 319 -1 O VAL B 317 N VAL B 299 SSBOND 1 CYS A 301 CYS A 377 1555 1555 2.09 SSBOND 2 CYS B 301 CYS B 377 1555 1555 2.12 CISPEP 1 PRO A 133 ASN A 134 0 -12.68 CISPEP 2 LEU A 268 GLY A 269 0 -7.46 CISPEP 3 MET A 307 PRO A 308 0 -4.07 CISPEP 4 PRO B 49 ARG B 50 0 -22.87 CISPEP 5 ARG B 113 GLY B 114 0 -16.91 CISPEP 6 PRO B 133 ASN B 134 0 -21.50 CISPEP 7 PHE B 223 GLY B 224 0 -9.93 CISPEP 8 LEU B 268 GLY B 269 0 7.27 CISPEP 9 MET B 307 PRO B 308 0 -3.78 SITE 1 AC1 4 VAL A 148 LYS A 150 PRO A 151 ARG B 310 CRYST1 120.385 120.385 248.117 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008307 0.004796 0.000000 0.00000 SCALE2 0.000000 0.009592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004030 0.00000