HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-JAN-11 3Q7D TITLE STRUCTURE OF (R)-NAPROXEN BOUND TO MCOX-2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN G/H SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLOOXYGENASE-2, COX-2, GLUCOCORTICOID-REGULATED COMPND 5 INFLAMMATORY CYCLOOXYGENASE, GRIPGHS, MACROPHAGE ACTIVATION- COMPND 6 ASSOCIATED MARKER PROTEIN P71/73, PES-2, PHS II, PROSTAGLANDIN H2 COMPND 7 SYNTHASE 2, PGH SYNTHASE 2, PGHS-2, PROSTAGLANDIN-ENDOPEROXIDE COMPND 8 SYNTHASE 2, TIS10 PROTEIN; COMPND 9 EC: 1.14.99.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PTGS2, COX-2, COX2, PGHS-B, TIS10; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PROSTAGLANDIN H2 SYNTHASE, CYCLOOXYGENASE-2, NAPROXEN, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DUGGAN,D.J.HERMANSON,J.MUSEE,J.J.PRUSAKIEWICZ,J.SCHEIB, AUTHOR 2 B.D.CARTER,S.BANERJEE,L.J.MARNETT REVDAT 6 20-NOV-24 3Q7D 1 REMARK REVDAT 5 13-SEP-23 3Q7D 1 HETSYN REVDAT 4 29-JUL-20 3Q7D 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-MAR-12 3Q7D 1 JRNL REVDAT 2 21-MAR-12 3Q7D 1 JRNL REVDAT 1 09-NOV-11 3Q7D 0 JRNL AUTH K.C.DUGGAN,D.J.HERMANSON,J.MUSEE,J.J.PRUSAKIEWICZ, JRNL AUTH 2 J.L.SCHEIB,B.D.CARTER,S.BANERJEE,J.A.OATES,L.J.MARNETT JRNL TITL (R)-PROFENS ARE SUBSTRATE-SELECTIVE INHIBITORS OF JRNL TITL 2 ENDOCANNABINOID OXYGENATION BY COX-2. JRNL REF NAT.CHEM.BIOL. V. 7 803 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 22053353 JRNL DOI 10.1038/NCHEMBIO.663 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 55701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5919 - 6.4928 0.99 2874 158 0.1962 0.2275 REMARK 3 2 6.4928 - 5.1624 0.99 2818 139 0.1884 0.2202 REMARK 3 3 5.1624 - 4.5125 0.99 2785 146 0.1332 0.1717 REMARK 3 4 4.5125 - 4.1011 0.99 2767 126 0.1414 0.1902 REMARK 3 5 4.1011 - 3.8078 0.99 2713 177 0.1417 0.1934 REMARK 3 6 3.8078 - 3.5837 1.00 2741 149 0.1508 0.1900 REMARK 3 7 3.5837 - 3.4045 0.99 2728 155 0.1755 0.2385 REMARK 3 8 3.4045 - 3.2565 0.99 2731 127 0.1898 0.2425 REMARK 3 9 3.2565 - 3.1312 0.98 2675 154 0.1956 0.2651 REMARK 3 10 3.1312 - 3.0233 0.97 2660 140 0.2035 0.2618 REMARK 3 11 3.0233 - 2.9288 0.96 2649 136 0.1991 0.2500 REMARK 3 12 2.9288 - 2.8452 0.96 2577 154 0.1907 0.2625 REMARK 3 13 2.8452 - 2.7704 0.95 2617 137 0.1992 0.2492 REMARK 3 14 2.7704 - 2.7028 0.93 2568 133 0.1966 0.2841 REMARK 3 15 2.7028 - 2.6414 0.93 2539 140 0.1998 0.3118 REMARK 3 16 2.6414 - 2.5852 0.92 2524 122 0.2072 0.2478 REMARK 3 17 2.5852 - 2.5335 0.92 2491 135 0.1923 0.2985 REMARK 3 18 2.5335 - 2.4858 0.92 2528 133 0.1882 0.2827 REMARK 3 19 2.4858 - 2.4414 0.90 2454 118 0.1925 0.2967 REMARK 3 20 2.4414 - 2.4000 0.90 2463 120 0.1972 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 25.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.13600 REMARK 3 B22 (A**2) : 3.23520 REMARK 3 B33 (A**2) : -9.37120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 9560 REMARK 3 ANGLE : 1.270 12969 REMARK 3 CHIRALITY : 0.090 1381 REMARK 3 PLANARITY : 0.005 1646 REMARK 3 DIHEDRAL : 19.941 3639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3NT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.36750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.51400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.51950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.36750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.51400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.51950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.36750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.51400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.51950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.36750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.51400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.51950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 584 REMARK 465 PRO A 585 REMARK 465 GLN A 586 REMARK 465 PRO A 587 REMARK 465 THR A 588 REMARK 465 LYS A 589 REMARK 465 THR A 590 REMARK 465 ALA A 591 REMARK 465 THR A 592 REMARK 465 ILE A 593 REMARK 465 ASN A 594 REMARK 465 ALA A 595 REMARK 465 SER A 596 REMARK 465 ALA A 597 REMARK 465 SER A 598 REMARK 465 HIS A 599 REMARK 465 SER A 600 REMARK 465 ARG A 601 REMARK 465 LEU A 602 REMARK 465 ASP A 603 REMARK 465 ASP A 604 REMARK 465 ILE A 605 REMARK 465 ASN A 606 REMARK 465 PRO A 607 REMARK 465 THR A 608 REMARK 465 VAL A 609 REMARK 465 LEU A 610 REMARK 465 ILE A 611 REMARK 465 LYS A 612 REMARK 465 ARG A 613 REMARK 465 ARG A 614 REMARK 465 SER A 615 REMARK 465 THR A 616 REMARK 465 GLU A 617 REMARK 465 LEU A 618 REMARK 465 ASP B 584 REMARK 465 PRO B 585 REMARK 465 GLN B 586 REMARK 465 PRO B 587 REMARK 465 THR B 588 REMARK 465 LYS B 589 REMARK 465 THR B 590 REMARK 465 ALA B 591 REMARK 465 THR B 592 REMARK 465 ILE B 593 REMARK 465 ASN B 594 REMARK 465 ALA B 595 REMARK 465 SER B 596 REMARK 465 ALA B 597 REMARK 465 SER B 598 REMARK 465 HIS B 599 REMARK 465 SER B 600 REMARK 465 ARG B 601 REMARK 465 LEU B 602 REMARK 465 ASP B 603 REMARK 465 ASP B 604 REMARK 465 ILE B 605 REMARK 465 ASN B 606 REMARK 465 PRO B 607 REMARK 465 THR B 608 REMARK 465 VAL B 609 REMARK 465 LEU B 610 REMARK 465 ILE B 611 REMARK 465 LYS B 612 REMARK 465 ARG B 613 REMARK 465 ARG B 614 REMARK 465 SER B 615 REMARK 465 THR B 616 REMARK 465 GLU B 617 REMARK 465 LEU B 618 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 138 O HOH B 756 2.03 REMARK 500 N TYR B 130 O HOH B 869 2.07 REMARK 500 O GLU B 281 N LEU B 283 2.07 REMARK 500 N TYR A 130 O HOH A 751 2.09 REMARK 500 N SER A 138 O HOH A 908 2.10 REMARK 500 ND2 ASN B 144 C1 NAG B 671 2.16 REMARK 500 O GLY B 418 O GLN B 421 2.16 REMARK 500 O GLY B 574 O HOH B 758 2.19 REMARK 500 O4 NAG B 671 O5 NAG B 9 2.19 REMARK 500 OE2 GLU B 322 O HOH B 722 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 376 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 130 139.51 59.94 REMARK 500 SER A 138 156.77 -28.51 REMARK 500 ARG A 185 -83.20 -93.48 REMARK 500 VAL A 287 -31.25 45.90 REMARK 500 TRP A 387 43.32 -100.05 REMARK 500 GLU A 398 103.61 -13.21 REMARK 500 ASP A 399 -45.22 119.38 REMARK 500 TYR A 409 60.32 35.71 REMARK 500 PHE A 422 -63.75 101.36 REMARK 500 ASN A 439 14.85 -140.72 REMARK 500 GLU A 484 -168.84 -126.83 REMARK 500 SER A 496 -40.07 78.59 REMARK 500 ASP A 499 6.54 -68.38 REMARK 500 PRO A 514 -77.05 -22.51 REMARK 500 LYS A 573 -68.15 -22.29 REMARK 500 LEU B 81 46.35 -91.92 REMARK 500 LEU B 82 3.26 -162.37 REMARK 500 TYR B 130 144.31 63.31 REMARK 500 LYS B 137 -75.31 -49.90 REMARK 500 SER B 138 140.68 56.80 REMARK 500 ARG B 185 -80.14 -90.05 REMARK 500 ASN B 195 -168.69 -115.57 REMARK 500 PRO B 263 156.74 -48.61 REMARK 500 GLU B 281 -147.36 40.05 REMARK 500 ASN B 282 -36.08 38.52 REMARK 500 VAL B 287 -23.00 51.41 REMARK 500 GLU B 398 104.23 -25.66 REMARK 500 ASP B 399 -36.15 113.76 REMARK 500 TYR B 409 61.61 23.19 REMARK 500 PHE B 422 -60.73 114.74 REMARK 500 ASN B 439 18.26 -140.35 REMARK 500 SER B 496 -34.92 75.35 REMARK 500 PRO B 514 -87.88 -16.87 REMARK 500 LYS B 573 -77.22 -21.64 REMARK 500 CYS B 575 60.39 142.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 288 GLN B 289 144.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 661 REMARK 610 NAG A 671 REMARK 610 NAG A 681 REMARK 610 NAG A 9 REMARK 610 NAG B 661 REMARK 610 NAG B 671 REMARK 610 NAG B 681 REMARK 610 NAG B 9 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 682 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 388 NE2 REMARK 620 2 HEM A 682 NA 95.7 REMARK 620 3 HEM A 682 NB 92.5 89.2 REMARK 620 4 HEM A 682 NC 91.9 172.3 91.9 REMARK 620 5 HEM A 682 ND 92.2 91.0 175.3 87.3 REMARK 620 6 HOH A 645 O 175.4 79.8 87.8 92.7 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 682 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 388 NE2 REMARK 620 2 HEM B 682 NA 94.3 REMARK 620 3 HEM B 682 NB 90.8 90.6 REMARK 620 4 HEM B 682 NC 91.4 174.3 88.6 REMARK 620 5 HEM B 682 ND 91.2 91.4 177.1 89.2 REMARK 620 N 1 2 3 4 DBREF 3Q7D A 33 618 UNP Q05769 PGH2_MOUSE 18 604 DBREF 3Q7D B 33 618 UNP Q05769 PGH2_MOUSE 18 604 SEQRES 1 A 587 ALA ASN PRO CYS CYS SER ASN PRO CYS GLN ASN ARG GLY SEQRES 2 A 587 GLU CYS MET SER THR GLY PHE ASP GLN TYR LYS CYS ASP SEQRES 3 A 587 CYS THR ARG THR GLY PHE TYR GLY GLU ASN CYS THR THR SEQRES 4 A 587 PRO GLU PHE LEU THR ARG ILE LYS LEU LEU LEU LYS PRO SEQRES 5 A 587 THR PRO ASN THR VAL HIS TYR ILE LEU THR HIS PHE LYS SEQRES 6 A 587 GLY VAL TRP ASN ILE VAL ASN ASN ILE PRO PHE LEU ARG SEQRES 7 A 587 SER LEU ILE MET LYS TYR VAL LEU THR SER ARG SER TYR SEQRES 8 A 587 LEU ILE ASP SER PRO PRO THR TYR ASN VAL HIS TYR GLY SEQRES 9 A 587 TYR LYS SER TRP GLU ALA PHE SER ASN LEU SER TYR TYR SEQRES 10 A 587 THR ARG ALA LEU PRO PRO VAL ALA ASP ASP CYS PRO THR SEQRES 11 A 587 PRO MET GLY VAL LYS GLY ASN LYS GLU LEU PRO ASP SER SEQRES 12 A 587 LYS GLU VAL LEU GLU LYS VAL LEU LEU ARG ARG GLU PHE SEQRES 13 A 587 ILE PRO ASP PRO GLN GLY SER ASN MET MET PHE ALA PHE SEQRES 14 A 587 PHE ALA GLN HIS PHE THR HIS GLN PHE PHE LYS THR ASP SEQRES 15 A 587 HIS LYS ARG GLY PRO GLY PHE THR ARG GLY LEU GLY HIS SEQRES 16 A 587 GLY VAL ASP LEU ASN HIS ILE TYR GLY GLU THR LEU ASP SEQRES 17 A 587 ARG GLN HIS LYS LEU ARG LEU PHE LYS ASP GLY LYS LEU SEQRES 18 A 587 LYS TYR GLN VAL ILE GLY GLY GLU VAL TYR PRO PRO THR SEQRES 19 A 587 VAL LYS ASP THR GLN VAL GLU MET ILE TYR PRO PRO HIS SEQRES 20 A 587 ILE PRO GLU ASN LEU GLN PHE ALA VAL GLY GLN GLU VAL SEQRES 21 A 587 PHE GLY LEU VAL PRO GLY LEU MET MET TYR ALA THR ILE SEQRES 22 A 587 TRP LEU ARG GLU HIS ASN ARG VAL CYS ASP ILE LEU LYS SEQRES 23 A 587 GLN GLU HIS PRO GLU TRP GLY ASP GLU GLN LEU PHE GLN SEQRES 24 A 587 THR SER ARG LEU ILE LEU ILE GLY GLU THR ILE LYS ILE SEQRES 25 A 587 VAL ILE GLU ASP TYR VAL GLN HIS LEU SER GLY TYR HIS SEQRES 26 A 587 PHE LYS LEU LYS PHE ASP PRO GLU LEU LEU PHE ASN GLN SEQRES 27 A 587 GLN PHE GLN TYR GLN ASN ARG ILE ALA SER GLU PHE ASN SEQRES 28 A 587 THR LEU TYR HIS TRP HIS PRO LEU LEU PRO ASP THR PHE SEQRES 29 A 587 ASN ILE GLU ASP GLN GLU TYR SER PHE LYS GLN PHE LEU SEQRES 30 A 587 TYR ASN ASN SER ILE LEU LEU GLU HIS GLY LEU THR GLN SEQRES 31 A 587 PHE VAL GLU SER PHE THR ARG GLN ILE ALA GLY ARG VAL SEQRES 32 A 587 ALA GLY GLY ARG ASN VAL PRO ILE ALA VAL GLN ALA VAL SEQRES 33 A 587 ALA LYS ALA SER ILE ASP GLN SER ARG GLU MET LYS TYR SEQRES 34 A 587 GLN SER LEU ASN GLU TYR ARG LYS ARG PHE SER LEU LYS SEQRES 35 A 587 PRO TYR THR SER PHE GLU GLU LEU THR GLY GLU LYS GLU SEQRES 36 A 587 MET ALA ALA GLU LEU LYS ALA LEU TYR SER ASP ILE ASP SEQRES 37 A 587 VAL MET GLU LEU TYR PRO ALA LEU LEU VAL GLU LYS PRO SEQRES 38 A 587 ARG PRO ASP ALA ILE PHE GLY GLU THR MET VAL GLU LEU SEQRES 39 A 587 GLY ALA PRO PHE SER LEU LYS GLY LEU MET GLY ASN PRO SEQRES 40 A 587 ILE CYS SER PRO GLN TYR TRP LYS PRO SER THR PHE GLY SEQRES 41 A 587 GLY GLU VAL GLY PHE LYS ILE ILE ASN THR ALA SER ILE SEQRES 42 A 587 GLN SER LEU ILE CYS ASN ASN VAL LYS GLY CYS PRO PHE SEQRES 43 A 587 THR SER PHE ASN VAL GLN ASP PRO GLN PRO THR LYS THR SEQRES 44 A 587 ALA THR ILE ASN ALA SER ALA SER HIS SER ARG LEU ASP SEQRES 45 A 587 ASP ILE ASN PRO THR VAL LEU ILE LYS ARG ARG SER THR SEQRES 46 A 587 GLU LEU SEQRES 1 B 587 ALA ASN PRO CYS CYS SER ASN PRO CYS GLN ASN ARG GLY SEQRES 2 B 587 GLU CYS MET SER THR GLY PHE ASP GLN TYR LYS CYS ASP SEQRES 3 B 587 CYS THR ARG THR GLY PHE TYR GLY GLU ASN CYS THR THR SEQRES 4 B 587 PRO GLU PHE LEU THR ARG ILE LYS LEU LEU LEU LYS PRO SEQRES 5 B 587 THR PRO ASN THR VAL HIS TYR ILE LEU THR HIS PHE LYS SEQRES 6 B 587 GLY VAL TRP ASN ILE VAL ASN ASN ILE PRO PHE LEU ARG SEQRES 7 B 587 SER LEU ILE MET LYS TYR VAL LEU THR SER ARG SER TYR SEQRES 8 B 587 LEU ILE ASP SER PRO PRO THR TYR ASN VAL HIS TYR GLY SEQRES 9 B 587 TYR LYS SER TRP GLU ALA PHE SER ASN LEU SER TYR TYR SEQRES 10 B 587 THR ARG ALA LEU PRO PRO VAL ALA ASP ASP CYS PRO THR SEQRES 11 B 587 PRO MET GLY VAL LYS GLY ASN LYS GLU LEU PRO ASP SER SEQRES 12 B 587 LYS GLU VAL LEU GLU LYS VAL LEU LEU ARG ARG GLU PHE SEQRES 13 B 587 ILE PRO ASP PRO GLN GLY SER ASN MET MET PHE ALA PHE SEQRES 14 B 587 PHE ALA GLN HIS PHE THR HIS GLN PHE PHE LYS THR ASP SEQRES 15 B 587 HIS LYS ARG GLY PRO GLY PHE THR ARG GLY LEU GLY HIS SEQRES 16 B 587 GLY VAL ASP LEU ASN HIS ILE TYR GLY GLU THR LEU ASP SEQRES 17 B 587 ARG GLN HIS LYS LEU ARG LEU PHE LYS ASP GLY LYS LEU SEQRES 18 B 587 LYS TYR GLN VAL ILE GLY GLY GLU VAL TYR PRO PRO THR SEQRES 19 B 587 VAL LYS ASP THR GLN VAL GLU MET ILE TYR PRO PRO HIS SEQRES 20 B 587 ILE PRO GLU ASN LEU GLN PHE ALA VAL GLY GLN GLU VAL SEQRES 21 B 587 PHE GLY LEU VAL PRO GLY LEU MET MET TYR ALA THR ILE SEQRES 22 B 587 TRP LEU ARG GLU HIS ASN ARG VAL CYS ASP ILE LEU LYS SEQRES 23 B 587 GLN GLU HIS PRO GLU TRP GLY ASP GLU GLN LEU PHE GLN SEQRES 24 B 587 THR SER ARG LEU ILE LEU ILE GLY GLU THR ILE LYS ILE SEQRES 25 B 587 VAL ILE GLU ASP TYR VAL GLN HIS LEU SER GLY TYR HIS SEQRES 26 B 587 PHE LYS LEU LYS PHE ASP PRO GLU LEU LEU PHE ASN GLN SEQRES 27 B 587 GLN PHE GLN TYR GLN ASN ARG ILE ALA SER GLU PHE ASN SEQRES 28 B 587 THR LEU TYR HIS TRP HIS PRO LEU LEU PRO ASP THR PHE SEQRES 29 B 587 ASN ILE GLU ASP GLN GLU TYR SER PHE LYS GLN PHE LEU SEQRES 30 B 587 TYR ASN ASN SER ILE LEU LEU GLU HIS GLY LEU THR GLN SEQRES 31 B 587 PHE VAL GLU SER PHE THR ARG GLN ILE ALA GLY ARG VAL SEQRES 32 B 587 ALA GLY GLY ARG ASN VAL PRO ILE ALA VAL GLN ALA VAL SEQRES 33 B 587 ALA LYS ALA SER ILE ASP GLN SER ARG GLU MET LYS TYR SEQRES 34 B 587 GLN SER LEU ASN GLU TYR ARG LYS ARG PHE SER LEU LYS SEQRES 35 B 587 PRO TYR THR SER PHE GLU GLU LEU THR GLY GLU LYS GLU SEQRES 36 B 587 MET ALA ALA GLU LEU LYS ALA LEU TYR SER ASP ILE ASP SEQRES 37 B 587 VAL MET GLU LEU TYR PRO ALA LEU LEU VAL GLU LYS PRO SEQRES 38 B 587 ARG PRO ASP ALA ILE PHE GLY GLU THR MET VAL GLU LEU SEQRES 39 B 587 GLY ALA PRO PHE SER LEU LYS GLY LEU MET GLY ASN PRO SEQRES 40 B 587 ILE CYS SER PRO GLN TYR TRP LYS PRO SER THR PHE GLY SEQRES 41 B 587 GLY GLU VAL GLY PHE LYS ILE ILE ASN THR ALA SER ILE SEQRES 42 B 587 GLN SER LEU ILE CYS ASN ASN VAL LYS GLY CYS PRO PHE SEQRES 43 B 587 THR SER PHE ASN VAL GLN ASP PRO GLN PRO THR LYS THR SEQRES 44 B 587 ALA THR ILE ASN ALA SER ALA SER HIS SER ARG LEU ASP SEQRES 45 B 587 ASP ILE ASN PRO THR VAL LEU ILE LYS ARG ARG SER THR SEQRES 46 B 587 GLU LEU HET NAG A 661 14 HET NAG A 671 14 HET NAG A 681 14 HET HEM A 682 43 HET NPX A1591 17 HET BOG A 3 20 HET BOG A 6 20 HET BOG A 620 20 HET NAG A 9 14 HET CL A 1 1 HET NAG B 661 14 HET NAG B 671 14 HET NAG B 681 14 HET HEM B 682 43 HET NPX B1591 17 HET BOG B 3 20 HET BOG B 620 20 HET NAG B 9 14 HET CL B 1 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NPX (2R)-2-(6-METHOXYNAPHTHALEN-2-YL)PROPANOIC ACID HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HEM HEME HETSYN NPX (R)-NAPROXEN HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 6 HEM 2(C34 H32 FE N4 O4) FORMUL 7 NPX 2(C14 H14 O3) FORMUL 8 BOG 5(C14 H28 O6) FORMUL 12 CL 2(CL 1-) FORMUL 22 HOH *598(H2 O) HELIX 1 1 GLU A 73 LYS A 83 1 11 HELIX 2 2 THR A 85 THR A 94 1 10 HELIX 3 3 PHE A 96 ASN A 105 1 10 HELIX 4 4 ILE A 105A TYR A 122 1 18 HELIX 5 5 SER A 138 ASN A 144 1 7 HELIX 6 6 ASP A 173 LEU A 182 1 10 HELIX 7 7 ASN A 195 HIS A 207 1 13 HELIX 8 8 LEU A 230 GLY A 235 1 6 HELIX 9 9 THR A 237 ARG A 245 1 9 HELIX 10 10 THR A 265 GLN A 270 1 6 HELIX 11 11 PRO A 280 GLN A 284 5 5 HELIX 12 12 VAL A 291 LEU A 294 5 4 HELIX 13 13 VAL A 295 HIS A 320 1 26 HELIX 14 14 GLY A 324 ASP A 347 1 24 HELIX 15 15 ASP A 347 GLY A 354 1 8 HELIX 16 16 ASP A 362 PHE A 367 5 6 HELIX 17 17 ALA A 378 TYR A 385 1 8 HELIX 18 18 TRP A 387 LEU A 391 5 5 HELIX 19 19 SER A 403 LEU A 408 1 6 HELIX 20 20 ASN A 411 GLY A 418 1 8 HELIX 21 21 LEU A 419 GLN A 429 1 11 HELIX 22 22 PRO A 441 ALA A 443 5 3 HELIX 23 23 VAL A 444 MET A 458 1 15 HELIX 24 24 SER A 462 PHE A 470 1 9 HELIX 25 25 SER A 477 GLY A 483 1 7 HELIX 26 26 LYS A 485 SER A 496 1 12 HELIX 27 27 ASP A 497 MET A 501 5 5 HELIX 28 28 GLU A 502 GLU A 510 1 9 HELIX 29 29 GLY A 519 ASN A 537 1 19 HELIX 30 30 PRO A 538 SER A 541 5 4 HELIX 31 31 LYS A 546 GLY A 551 5 6 HELIX 32 32 GLY A 552 THR A 561 1 10 HELIX 33 33 SER A 563 VAL A 572 1 10 HELIX 34 34 GLU B 73 LEU B 81 1 9 HELIX 35 35 THR B 85 THR B 94 1 10 HELIX 36 36 PHE B 96 ASN B 104 1 9 HELIX 37 37 ILE B 105A TYR B 122 1 18 HELIX 38 38 SER B 138 ASN B 144 1 7 HELIX 39 39 ASP B 173 LEU B 182 1 10 HELIX 40 40 ASN B 195 HIS B 207 1 13 HELIX 41 41 LEU B 230 GLY B 235 1 6 HELIX 42 42 THR B 237 ARG B 245 1 9 HELIX 43 43 THR B 265 GLN B 270 1 6 HELIX 44 44 VAL B 291 LEU B 294 5 4 HELIX 45 45 VAL B 295 HIS B 320 1 26 HELIX 46 46 GLY B 324 ASP B 347 1 24 HELIX 47 47 ASP B 347 GLY B 354 1 8 HELIX 48 48 ASP B 362 PHE B 367 5 6 HELIX 49 49 ALA B 378 TYR B 385 1 8 HELIX 50 50 HIS B 386 LEU B 391 5 6 HELIX 51 51 SER B 403 LEU B 408 1 6 HELIX 52 52 ASN B 411 GLY B 418 1 8 HELIX 53 53 LEU B 419 GLN B 429 1 11 HELIX 54 54 PRO B 441 ALA B 443 5 3 HELIX 55 55 VAL B 444 MET B 458 1 15 HELIX 56 56 SER B 462 PHE B 470 1 9 HELIX 57 57 SER B 477 GLY B 483 1 7 HELIX 58 58 LYS B 485 SER B 496 1 12 HELIX 59 59 ASP B 497 MET B 501 5 5 HELIX 60 60 GLU B 502 GLU B 510 1 9 HELIX 61 61 GLY B 519 GLY B 536 1 18 HELIX 62 62 ASN B 537 SER B 541 5 5 HELIX 63 63 LYS B 546 GLY B 551 5 6 HELIX 64 64 GLY B 552 ALA B 562 1 11 HELIX 65 65 SER B 563 VAL B 572 1 10 SHEET 1 A 2 GLU A 46 SER A 49 0 SHEET 2 A 2 TYR A 55 ASP A 58 -1 O ASP A 58 N GLU A 46 SHEET 1 B 2 PHE A 64 TYR A 65 0 SHEET 2 B 2 THR A 71 PRO A 72 -1 O THR A 71 N TYR A 65 SHEET 1 C 2 GLN A 255 ILE A 257 0 SHEET 2 C 2 GLU A 260 TYR A 262 -1 O TYR A 262 N GLN A 255 SHEET 1 D 2 GLU B 46 SER B 49 0 SHEET 2 D 2 TYR B 55 ASP B 58 -1 O LYS B 56 N MET B 48 SHEET 1 E 2 PHE B 64 TYR B 65 0 SHEET 2 E 2 THR B 71 PRO B 72 -1 O THR B 71 N TYR B 65 SHEET 1 F 2 GLN B 255 ILE B 257 0 SHEET 2 F 2 GLU B 260 TYR B 262 -1 O TYR B 262 N GLN B 255 SHEET 1 G 2 PHE B 395 ILE B 397 0 SHEET 2 G 2 GLN B 400 TYR B 402 -1 O TYR B 402 N PHE B 395 SSBOND 1 CYS A 36 CYS A 47 1555 1555 2.07 SSBOND 2 CYS A 37 CYS A 159 1555 1555 2.04 SSBOND 3 CYS A 41 CYS A 57 1555 1555 2.03 SSBOND 4 CYS A 59 CYS A 69 1555 1555 2.05 SSBOND 5 CYS A 569 CYS A 575 1555 1555 2.04 SSBOND 6 CYS B 36 CYS B 47 1555 1555 2.05 SSBOND 7 CYS B 37 CYS B 159 1555 1555 2.05 SSBOND 8 CYS B 41 CYS B 57 1555 1555 2.04 SSBOND 9 CYS B 59 CYS B 69 1555 1555 2.05 SSBOND 10 CYS B 569 CYS B 575 1555 1555 2.05 LINK NE2 HIS A 388 FE HEM A 682 1555 1555 2.19 LINK O HOH A 645 FE HEM A 682 1555 1555 2.78 LINK NE2 HIS B 388 FE HEM B 682 1555 1555 2.23 CISPEP 1 SER A 126 PRO A 127 0 -1.33 CISPEP 2 SER B 126 PRO B 127 0 0.75 CRYST1 122.735 133.028 181.039 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005524 0.00000