HEADER SIGNALING PROTEIN 05-JAN-11 3Q7L TITLE CRYSTAL STRUCTURE OF THE E2 DOMAIN OF AMYLOID PRECURSOR-LIKE PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: APLP1 E2 DOMAIN; COMPND 5 SYNONYM: APLP, APLP-1, C30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APLP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS APLP1 E2 DOMAIN, ALZHEIMER'S DISEASE, HEPARIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XUE,Y.HA REVDAT 4 21-FEB-24 3Q7L 1 REMARK SEQADV REVDAT 3 07-SEP-11 3Q7L 1 JRNL REVDAT 2 27-JUL-11 3Q7L 1 JRNL REVDAT 1 29-JUN-11 3Q7L 0 JRNL AUTH Y.XUE,S.LEE,Y.WANG,Y.HA JRNL TITL CRYSTAL STRUCTURE OF THE E2 DOMAIN OF AMYLOID PRECURSOR JRNL TITL 2 PROTEIN-LIKE PROTEIN 1 IN COMPLEX WITH SUCROSE OCTASULFATE. JRNL REF J.BIOL.CHEM. V. 286 29748 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21715329 JRNL DOI 10.1074/JBC.M111.219659 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 24713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3034 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4113 ; 1.039 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 0.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;41.756 ;23.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;14.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2323 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1953 ; 6.380 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3096 ; 8.751 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ;12.841 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1017 ;16.944 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0490 -22.8268 38.3853 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.0947 REMARK 3 T33: 0.1272 T12: 0.0569 REMARK 3 T13: -0.0451 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5128 L22: 0.5238 REMARK 3 L33: 0.8322 L12: -0.1108 REMARK 3 L13: -0.0259 L23: -0.6348 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: -0.0675 S13: 0.0919 REMARK 3 S21: 0.1604 S22: 0.0732 S23: -0.0586 REMARK 3 S31: -0.1247 S32: -0.0507 S33: 0.0704 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3460 -56.6929 40.0057 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.1489 REMARK 3 T33: 0.1239 T12: 0.0739 REMARK 3 T13: 0.0585 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.1685 L22: 1.4787 REMARK 3 L33: 1.9491 L12: 0.9425 REMARK 3 L13: -1.2924 L23: -1.6473 REMARK 3 S TENSOR REMARK 3 S11: -0.1563 S12: 0.0728 S13: -0.1742 REMARK 3 S21: 0.0170 S22: -0.0419 S23: -0.1201 REMARK 3 S31: 0.0381 S32: -0.0214 S33: 0.1983 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 292 B 379 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0816 -44.5129 21.0609 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1984 REMARK 3 T33: 0.1011 T12: 0.0739 REMARK 3 T13: 0.0000 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.9767 L22: 0.5277 REMARK 3 L33: 0.3857 L12: -0.4351 REMARK 3 L13: 0.5417 L23: -0.0822 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: 0.1094 S13: 0.0734 REMARK 3 S21: -0.0165 S22: -0.0992 S23: -0.0673 REMARK 3 S31: -0.0036 S32: 0.0079 S33: 0.0475 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 380 B 487 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0690 -22.2116 19.6106 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.0933 REMARK 3 T33: 0.2045 T12: 0.0306 REMARK 3 T13: -0.0074 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.9595 L22: 1.1378 REMARK 3 L33: 1.0218 L12: 0.3963 REMARK 3 L13: 1.3611 L23: 0.0371 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.0591 S13: 0.1813 REMARK 3 S21: 0.0371 S22: -0.1141 S23: 0.3056 REMARK 3 S31: 0.0734 S32: 0.1045 S33: 0.0593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS, 0.2 M REMARK 280 LI2SO4, 25 MM ATP, PH 6.5, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.47650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.62100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.52250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.62100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.47650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.52250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 HIS A 283 REMARK 465 MET A 284 REMARK 465 THR A 285 REMARK 465 PRO A 286 REMARK 465 THR A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 PRO A 290 REMARK 465 THR A 291 REMARK 465 SER A 487 REMARK 465 GLU A 488 REMARK 465 HIS A 489 REMARK 465 LEU A 490 REMARK 465 GLY A 491 REMARK 465 PRO A 492 REMARK 465 SER A 493 REMARK 465 GLU A 494 REMARK 465 GLY B 281 REMARK 465 SER B 282 REMARK 465 HIS B 283 REMARK 465 MET B 284 REMARK 465 THR B 285 REMARK 465 PRO B 286 REMARK 465 THR B 287 REMARK 465 PRO B 288 REMARK 465 ARG B 289 REMARK 465 PRO B 290 REMARK 465 THR B 291 REMARK 465 GLU B 488 REMARK 465 HIS B 489 REMARK 465 LEU B 490 REMARK 465 GLY B 491 REMARK 465 PRO B 492 REMARK 465 SER B 493 REMARK 465 GLU B 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ARG A 312 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 GLU A 374 CD OE1 OE2 REMARK 470 ASP A 402 CG OD1 OD2 REMARK 470 GLN A 405 CG CD OE1 NE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LEU A 410 CG CD1 CD2 REMARK 470 ARG A 414 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 418 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 GLN A 444 CG CD OE1 NE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 ASP A 468 CG OD1 OD2 REMARK 470 GLN A 469 CG CD OE1 NE2 REMARK 470 ASN A 470 CG OD1 ND2 REMARK 470 HIS A 472 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 473 CG CD1 CD2 REMARK 470 GLN A 475 CG CD OE1 NE2 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 480 CG CD OE1 NE2 REMARK 470 ILE A 481 CG1 CG2 CD1 REMARK 470 GLN A 482 CG CD OE1 NE2 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 LEU A 485 CG CD1 CD2 REMARK 470 HIS A 486 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 312 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 470 MET B 334 CG SD CE REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 ASN B 341 CG OD1 ND2 REMARK 470 LEU B 342 CG CD1 CD2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 GLN B 348 CG CD OE1 NE2 REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 470 GLU B 374 CD OE1 OE2 REMARK 470 ASP B 402 CG OD1 OD2 REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 ARG B 408 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 421 CG CD OE1 NE2 REMARK 470 GLU B 440 CG CD OE1 OE2 REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 GLN B 448 OE1 NE2 REMARK 470 GLU B 457 CD OE1 OE2 REMARK 470 GLN B 469 CG CD OE1 NE2 REMARK 470 HIS B 472 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 475 CG CD OE1 NE2 REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 483 CG CD OE1 OE2 REMARK 470 HIS B 486 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 344 -37.66 -37.95 REMARK 500 ASP A 402 -75.02 -41.12 REMARK 500 ASP A 438 71.98 -171.77 REMARK 500 GLN A 469 21.57 -69.63 REMARK 500 ASN A 470 74.28 -157.97 REMARK 500 LEU A 485 -42.92 -22.85 REMARK 500 ASN B 341 49.70 -99.72 REMARK 500 PRO B 404 120.19 -39.47 REMARK 500 ASP B 438 83.90 -151.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q7G RELATED DB: PDB DBREF 3Q7L A 285 494 UNP P51693 APLP1_HUMAN 285 494 DBREF 3Q7L B 285 494 UNP P51693 APLP1_HUMAN 285 494 SEQADV 3Q7L GLY A 281 UNP P51693 EXPRESSION TAG SEQADV 3Q7L SER A 282 UNP P51693 EXPRESSION TAG SEQADV 3Q7L HIS A 283 UNP P51693 EXPRESSION TAG SEQADV 3Q7L MET A 284 UNP P51693 EXPRESSION TAG SEQADV 3Q7L GLY B 281 UNP P51693 EXPRESSION TAG SEQADV 3Q7L SER B 282 UNP P51693 EXPRESSION TAG SEQADV 3Q7L HIS B 283 UNP P51693 EXPRESSION TAG SEQADV 3Q7L MET B 284 UNP P51693 EXPRESSION TAG SEQRES 1 A 214 GLY SER HIS MET THR PRO THR PRO ARG PRO THR ASP GLY SEQRES 2 A 214 VAL ASP ILE TYR PHE GLY MET PRO GLY GLU ILE SER GLU SEQRES 3 A 214 HIS GLU GLY PHE LEU ARG ALA LYS MET ASP LEU GLU GLU SEQRES 4 A 214 ARG ARG MET ARG GLN ILE ASN GLU VAL MET ARG GLU TRP SEQRES 5 A 214 ALA MET ALA ASP ASN GLN SER LYS ASN LEU PRO LYS ALA SEQRES 6 A 214 ASP ARG GLN ALA LEU ASN GLU HIS PHE GLN SER ILE LEU SEQRES 7 A 214 GLN THR LEU GLU GLU GLN VAL SER GLY GLU ARG GLN ARG SEQRES 8 A 214 LEU VAL GLU THR HIS ALA THR ARG VAL ILE ALA LEU ILE SEQRES 9 A 214 ASN ASP GLN ARG ARG ALA ALA LEU GLU GLY PHE LEU ALA SEQRES 10 A 214 ALA LEU GLN ALA ASP PRO PRO GLN ALA GLU ARG VAL LEU SEQRES 11 A 214 LEU ALA LEU ARG ARG TYR LEU ARG ALA GLU GLN LYS GLU SEQRES 12 A 214 GLN ARG HIS THR LEU ARG HIS TYR GLN HIS VAL ALA ALA SEQRES 13 A 214 VAL ASP PRO GLU LYS ALA GLN GLN MET ARG PHE GLN VAL SEQRES 14 A 214 HIS THR HIS LEU GLN VAL ILE GLU GLU ARG VAL ASN GLN SEQRES 15 A 214 SER LEU GLY LEU LEU ASP GLN ASN PRO HIS LEU ALA GLN SEQRES 16 A 214 GLU LEU ARG PRO GLN ILE GLN GLU LEU LEU HIS SER GLU SEQRES 17 A 214 HIS LEU GLY PRO SER GLU SEQRES 1 B 214 GLY SER HIS MET THR PRO THR PRO ARG PRO THR ASP GLY SEQRES 2 B 214 VAL ASP ILE TYR PHE GLY MET PRO GLY GLU ILE SER GLU SEQRES 3 B 214 HIS GLU GLY PHE LEU ARG ALA LYS MET ASP LEU GLU GLU SEQRES 4 B 214 ARG ARG MET ARG GLN ILE ASN GLU VAL MET ARG GLU TRP SEQRES 5 B 214 ALA MET ALA ASP ASN GLN SER LYS ASN LEU PRO LYS ALA SEQRES 6 B 214 ASP ARG GLN ALA LEU ASN GLU HIS PHE GLN SER ILE LEU SEQRES 7 B 214 GLN THR LEU GLU GLU GLN VAL SER GLY GLU ARG GLN ARG SEQRES 8 B 214 LEU VAL GLU THR HIS ALA THR ARG VAL ILE ALA LEU ILE SEQRES 9 B 214 ASN ASP GLN ARG ARG ALA ALA LEU GLU GLY PHE LEU ALA SEQRES 10 B 214 ALA LEU GLN ALA ASP PRO PRO GLN ALA GLU ARG VAL LEU SEQRES 11 B 214 LEU ALA LEU ARG ARG TYR LEU ARG ALA GLU GLN LYS GLU SEQRES 12 B 214 GLN ARG HIS THR LEU ARG HIS TYR GLN HIS VAL ALA ALA SEQRES 13 B 214 VAL ASP PRO GLU LYS ALA GLN GLN MET ARG PHE GLN VAL SEQRES 14 B 214 HIS THR HIS LEU GLN VAL ILE GLU GLU ARG VAL ASN GLN SEQRES 15 B 214 SER LEU GLY LEU LEU ASP GLN ASN PRO HIS LEU ALA GLN SEQRES 16 B 214 GLU LEU ARG PRO GLN ILE GLN GLU LEU LEU HIS SER GLU SEQRES 17 B 214 HIS LEU GLY PRO SER GLU HET SO4 A 1 5 HET SO4 B 2 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *283(H2 O) HELIX 1 1 ASP A 292 GLY A 299 1 8 HELIX 2 2 SER A 305 GLN A 338 1 34 HELIX 3 3 PRO A 343 ALA A 401 1 59 HELIX 4 4 GLN A 405 ASP A 438 1 34 HELIX 5 5 ASP A 438 GLN A 469 1 32 HELIX 6 6 ASN A 470 LEU A 477 1 8 HELIX 7 7 LEU A 477 HIS A 486 1 10 HELIX 8 8 ASP B 292 GLY B 299 1 8 HELIX 9 9 SER B 305 LYS B 340 1 36 HELIX 10 10 PRO B 343 GLN B 400 1 58 HELIX 11 11 GLN B 405 ASP B 438 1 34 HELIX 12 12 ASP B 438 GLY B 465 1 28 HELIX 13 13 LEU B 466 GLN B 469 5 4 HELIX 14 14 ASN B 470 SER B 487 1 18 SITE 1 AC1 5 HOH A 43 HOH A 67 LYS A 422 ARG A 425 SITE 2 AC1 5 ARG A 429 SITE 1 AC2 5 HOH B 8 HOH B 52 LYS B 422 ARG B 425 SITE 2 AC2 5 ARG B 429 CRYST1 72.953 83.045 89.242 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011205 0.00000