HEADER TRANSFERASE 05-JAN-11 3Q7U TITLE STRUCTURE OF MTB 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE TITLE 2 CYTIDYLTRANSFERASE (ISPD) COMPLEXED WITH CTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP COMPND 5 CYTIDYLYLTRANSFERASE, MCT; COMPND 6 EC: 2.7.7.60; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ISPD, RV3582C, MT3688, MTCY06G11.29C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, ROSSMANN FOLD, 2-C-METHYL- KEYWDS 2 D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,J.B.BRUNING,C.THURMAN,T.R.IOERGER,J.C.SACCHETTINI,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 13-SEP-23 3Q7U 1 REMARK SEQADV LINK REVDAT 2 12-NOV-14 3Q7U 1 KEYWDS REVDAT 1 04-MAY-11 3Q7U 0 JRNL AUTH M.C.M.REDDY,J.B.BRUNING,C.THURMAN,T.R.IOERGER, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE JRNL TITL 3 (ISPD): A CANDIDATE ANTITUBERCULAR DRUG TARGET JRNL REF PROTEINS 2011 JRNL REFN ESSN 1097-0134 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3844 - 4.8050 1.00 2829 141 0.1722 0.2023 REMARK 3 2 4.8050 - 3.8150 1.00 2691 152 0.1357 0.1777 REMARK 3 3 3.8150 - 3.3331 1.00 2668 137 0.1797 0.2348 REMARK 3 4 3.3331 - 3.0284 1.00 2619 165 0.1961 0.2399 REMARK 3 5 3.0284 - 2.8115 1.00 2615 157 0.2048 0.2779 REMARK 3 6 2.8115 - 2.6457 1.00 2612 133 0.2093 0.2540 REMARK 3 7 2.6457 - 2.5133 1.00 2627 146 0.2221 0.2637 REMARK 3 8 2.5133 - 2.4039 1.00 2613 123 0.2218 0.3125 REMARK 3 9 2.4039 - 2.3113 1.00 2607 140 0.2339 0.2575 REMARK 3 10 2.3113 - 2.2316 1.00 2599 154 0.2354 0.2797 REMARK 3 11 2.2316 - 2.1618 1.00 2615 128 0.2616 0.3170 REMARK 3 12 2.1618 - 2.1000 1.00 2578 148 0.2856 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 61.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07920 REMARK 3 B22 (A**2) : 0.25960 REMARK 3 B33 (A**2) : -0.33880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3377 REMARK 3 ANGLE : 1.145 4638 REMARK 3 CHIRALITY : 0.071 585 REMARK 3 PLANARITY : 0.004 599 REMARK 3 DIHEDRAL : 20.280 1266 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:47) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6363 -6.2354 9.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.2726 T22: 0.1636 REMARK 3 T33: 0.2569 T12: -0.0084 REMARK 3 T13: -0.0671 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.3976 L22: 0.5678 REMARK 3 L33: 0.5909 L12: -0.3191 REMARK 3 L13: -0.4422 L23: 0.3985 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0207 S13: -0.0108 REMARK 3 S21: -0.1033 S22: -0.0417 S23: -0.1183 REMARK 3 S31: 0.2928 S32: -0.0225 S33: 0.0328 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 48:131) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8396 1.8052 1.9501 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1045 REMARK 3 T33: 0.1683 T12: 0.0304 REMARK 3 T13: -0.0329 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.0915 L22: 1.4403 REMARK 3 L33: 2.0447 L12: 0.5910 REMARK 3 L13: 0.0771 L23: -0.9570 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.1370 S13: -0.0493 REMARK 3 S21: -0.1710 S22: 0.0007 S23: -0.0553 REMARK 3 S31: 0.0852 S32: 0.0084 S33: 0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 132:168) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0388 13.3290 24.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.1974 REMARK 3 T33: 0.2659 T12: -0.0526 REMARK 3 T13: 0.0065 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.0499 L22: -0.0366 REMARK 3 L33: 0.7805 L12: 0.0488 REMARK 3 L13: 0.2882 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.0098 S13: 0.1675 REMARK 3 S21: -0.0816 S22: -0.1442 S23: 0.0902 REMARK 3 S31: -0.2391 S32: -0.0786 S33: 0.0677 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 169:201) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0781 13.6159 5.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.2582 REMARK 3 T33: 0.2846 T12: -0.0565 REMARK 3 T13: 0.0086 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.2446 L22: 1.5971 REMARK 3 L33: 0.8990 L12: 0.5177 REMARK 3 L13: -0.7902 L23: 0.5898 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.3855 S13: -0.1339 REMARK 3 S21: -0.1512 S22: 0.0080 S23: -0.3055 REMARK 3 S31: -0.3444 S32: 0.2784 S33: -0.0777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 202:231) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0119 1.5908 17.7667 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.2058 REMARK 3 T33: 0.2232 T12: -0.0005 REMARK 3 T13: -0.0113 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.7309 L22: 0.4381 REMARK 3 L33: 1.3880 L12: 0.1027 REMARK 3 L13: -0.3127 L23: 0.1257 REMARK 3 S TENSOR REMARK 3 S11: 0.1172 S12: -0.1965 S13: 0.0498 REMARK 3 S21: 0.3200 S22: -0.2437 S23: 0.0737 REMARK 3 S31: 0.0586 S32: 0.0439 S33: 0.0862 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 6:122) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8399 5.1092 46.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.3542 REMARK 3 T33: 0.2288 T12: -0.0565 REMARK 3 T13: -0.0064 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 1.3805 L22: 1.4196 REMARK 3 L33: 2.9707 L12: 0.3293 REMARK 3 L13: -0.1610 L23: 1.1205 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.1514 S13: 0.1836 REMARK 3 S21: 0.0137 S22: -0.0361 S23: 0.0982 REMARK 3 S31: 0.0185 S32: -0.4561 S33: -0.0278 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 123:139) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7728 5.2907 41.5512 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.2803 REMARK 3 T33: 0.2435 T12: -0.0120 REMARK 3 T13: -0.0208 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.9419 L22: 1.6126 REMARK 3 L33: 1.8980 L12: -0.1393 REMARK 3 L13: -0.9659 L23: -0.1790 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.1453 S13: -0.1170 REMARK 3 S21: -0.1417 S22: 0.1372 S23: -0.5431 REMARK 3 S31: 0.0457 S32: 0.9893 S33: -0.0552 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 140:170) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0871 13.8507 26.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.2675 T22: 0.2078 REMARK 3 T33: 0.2652 T12: -0.0925 REMARK 3 T13: 0.0049 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0803 L22: 0.4671 REMARK 3 L33: 1.4298 L12: 0.0526 REMARK 3 L13: -0.2368 L23: 0.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.1768 S13: 0.0888 REMARK 3 S21: -0.1139 S22: 0.1144 S23: 0.0937 REMARK 3 S31: -0.3801 S32: 0.3026 S33: -0.1229 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 171:200) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7177 21.0022 44.6797 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.3563 REMARK 3 T33: 0.4212 T12: 0.0065 REMARK 3 T13: -0.0397 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.0804 L22: 0.5394 REMARK 3 L33: 0.4613 L12: 0.0406 REMARK 3 L13: 0.1378 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.0134 S13: 1.0849 REMARK 3 S21: -0.3064 S22: -0.0275 S23: 0.3917 REMARK 3 S31: -0.7135 S32: -0.4733 S33: 0.0991 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 201:231) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4663 0.6331 33.1718 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.1866 REMARK 3 T33: 0.2026 T12: -0.0742 REMARK 3 T13: 0.0015 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.0688 L22: 0.7058 REMARK 3 L33: 1.2911 L12: 0.1077 REMARK 3 L13: 0.2315 L23: -0.1061 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.1567 S13: 0.0953 REMARK 3 S21: -0.1168 S22: 0.0313 S23: -0.0234 REMARK 3 S31: 0.1725 S32: -0.1689 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.030 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.01 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : 2.70000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1I52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M NAH2PO4, 1.6M K2HPO4, 0.1M REMARK 280 IMIDAZOLE, 0.2M NACL, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.60700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.76900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.37800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.76900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.60700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.37800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 185 REMARK 465 PRO A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 VAL B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 THR A 191 OG1 CG2 REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 78.14 -117.57 REMARK 500 SER A 139 -78.12 -88.21 REMARK 500 GLN A 164 -163.98 -116.61 REMARK 500 ALA B 22 65.93 37.05 REMARK 500 ARG B 110 59.13 -95.98 REMARK 500 ASP B 146 -149.62 -88.12 REMARK 500 ASN B 148 -52.15 98.33 REMARK 500 GLN B 164 -165.62 -120.63 REMARK 500 ARG B 180 123.29 -38.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 146 ALA B 147 -148.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 361 O REMARK 620 2 HOH A 362 O 123.6 REMARK 620 3 CTP A 500 O3G 156.0 80.4 REMARK 620 4 CTP A 500 O3A 91.4 141.7 65.2 REMARK 620 5 CTP A 500 O1B 98.9 102.2 71.9 52.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 337 O REMARK 620 2 CTP B 500 O3G 133.8 REMARK 620 3 CTP B 500 O3A 74.7 62.6 REMARK 620 4 CTP B 500 O1B 91.6 76.4 52.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKR RELATED DB: PDB REMARK 900 APO MTB ISPD REMARK 900 RELATED ID: 3Q80 RELATED DB: PDB REMARK 900 MTB ISPD COMPLEXED WITH CDP-ME DBREF 3Q7U A 1 231 UNP P96864 ISPD_MYCTU 1 231 DBREF 3Q7U B 1 231 UNP P96864 ISPD_MYCTU 1 231 SEQADV 3Q7U VAL A 1 UNP P96864 MET 1 CONFLICT SEQADV 3Q7U VAL B 1 UNP P96864 MET 1 CONFLICT SEQRES 1 A 231 VAL VAL ARG GLU ALA GLY GLU VAL VAL ALA ILE VAL PRO SEQRES 2 A 231 ALA ALA GLY SER GLY GLU ARG LEU ALA VAL GLY VAL PRO SEQRES 3 A 231 LYS ALA PHE TYR GLN LEU ASP GLY GLN THR LEU ILE GLU SEQRES 4 A 231 ARG ALA VAL ASP GLY LEU LEU ASP SER GLY VAL VAL ASP SEQRES 5 A 231 THR VAL VAL VAL ALA VAL PRO ALA ASP ARG THR ASP GLU SEQRES 6 A 231 ALA ARG GLN ILE LEU GLY HIS ARG ALA MET ILE VAL ALA SEQRES 7 A 231 GLY GLY SER ASN ARG THR ASP THR VAL ASN LEU ALA LEU SEQRES 8 A 231 THR VAL LEU SER GLY THR ALA GLU PRO GLU PHE VAL LEU SEQRES 9 A 231 VAL HIS ASP ALA ALA ARG ALA LEU THR PRO PRO ALA LEU SEQRES 10 A 231 VAL ALA ARG VAL VAL GLU ALA LEU ARG ASP GLY TYR ALA SEQRES 11 A 231 ALA VAL VAL PRO VAL LEU PRO LEU SER ASP THR ILE LYS SEQRES 12 A 231 ALA VAL ASP ALA ASN GLY VAL VAL LEU GLY THR PRO GLU SEQRES 13 A 231 ARG ALA GLY LEU ARG ALA VAL GLN THR PRO GLN GLY PHE SEQRES 14 A 231 THR THR ASP LEU LEU LEU ARG SER TYR GLN ARG GLY SER SEQRES 15 A 231 LEU ASP LEU PRO ALA ALA GLU TYR THR ASP ASP ALA SER SEQRES 16 A 231 LEU VAL GLU HIS ILE GLY GLY GLN VAL GLN VAL VAL ASP SEQRES 17 A 231 GLY ASP PRO LEU ALA PHE LYS ILE THR THR LYS LEU ASP SEQRES 18 A 231 LEU LEU LEU ALA GLN ALA ILE VAL ARG GLY SEQRES 1 B 231 VAL VAL ARG GLU ALA GLY GLU VAL VAL ALA ILE VAL PRO SEQRES 2 B 231 ALA ALA GLY SER GLY GLU ARG LEU ALA VAL GLY VAL PRO SEQRES 3 B 231 LYS ALA PHE TYR GLN LEU ASP GLY GLN THR LEU ILE GLU SEQRES 4 B 231 ARG ALA VAL ASP GLY LEU LEU ASP SER GLY VAL VAL ASP SEQRES 5 B 231 THR VAL VAL VAL ALA VAL PRO ALA ASP ARG THR ASP GLU SEQRES 6 B 231 ALA ARG GLN ILE LEU GLY HIS ARG ALA MET ILE VAL ALA SEQRES 7 B 231 GLY GLY SER ASN ARG THR ASP THR VAL ASN LEU ALA LEU SEQRES 8 B 231 THR VAL LEU SER GLY THR ALA GLU PRO GLU PHE VAL LEU SEQRES 9 B 231 VAL HIS ASP ALA ALA ARG ALA LEU THR PRO PRO ALA LEU SEQRES 10 B 231 VAL ALA ARG VAL VAL GLU ALA LEU ARG ASP GLY TYR ALA SEQRES 11 B 231 ALA VAL VAL PRO VAL LEU PRO LEU SER ASP THR ILE LYS SEQRES 12 B 231 ALA VAL ASP ALA ASN GLY VAL VAL LEU GLY THR PRO GLU SEQRES 13 B 231 ARG ALA GLY LEU ARG ALA VAL GLN THR PRO GLN GLY PHE SEQRES 14 B 231 THR THR ASP LEU LEU LEU ARG SER TYR GLN ARG GLY SER SEQRES 15 B 231 LEU ASP LEU PRO ALA ALA GLU TYR THR ASP ASP ALA SER SEQRES 16 B 231 LEU VAL GLU HIS ILE GLY GLY GLN VAL GLN VAL VAL ASP SEQRES 17 B 231 GLY ASP PRO LEU ALA PHE LYS ILE THR THR LYS LEU ASP SEQRES 18 B 231 LEU LEU LEU ALA GLN ALA ILE VAL ARG GLY HET MG A 600 1 HET CTP A 500 29 HET CTP B 500 29 HET MG B 232 1 HETNAM MG MAGNESIUM ION HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 CTP 2(C9 H16 N3 O14 P3) FORMUL 7 HOH *396(H2 O) HELIX 1 1 PRO A 26 PHE A 29 5 4 HELIX 2 2 LEU A 37 SER A 48 1 12 HELIX 3 3 PRO A 59 ASP A 61 5 3 HELIX 4 4 ARG A 62 GLY A 71 1 10 HELIX 5 5 HIS A 72 ALA A 74 5 3 HELIX 6 6 ASN A 82 THR A 92 1 11 HELIX 7 7 PRO A 114 ASP A 127 1 14 HELIX 8 8 GLU A 156 ALA A 158 5 3 HELIX 9 9 THR A 171 SER A 182 1 12 HELIX 10 10 ASP A 192 ILE A 200 1 9 HELIX 11 11 ASP A 210 PHE A 214 5 5 HELIX 12 12 THR A 218 ARG A 230 1 13 HELIX 13 13 PRO B 26 PHE B 29 5 4 HELIX 14 14 LEU B 37 ASP B 47 1 11 HELIX 15 15 PRO B 59 ASP B 61 5 3 HELIX 16 16 ARG B 62 GLY B 71 1 10 HELIX 17 17 HIS B 72 ALA B 74 5 3 HELIX 18 18 ASN B 82 THR B 92 1 11 HELIX 19 19 PRO B 114 ASP B 127 1 14 HELIX 20 20 GLU B 156 ALA B 158 5 3 HELIX 21 21 THR B 171 GLN B 179 1 9 HELIX 22 22 ASP B 184 ALA B 188 5 5 HELIX 23 23 ASP B 193 ILE B 200 1 8 HELIX 24 24 ASP B 210 PHE B 214 5 5 HELIX 25 25 THR B 218 GLY B 231 1 14 SHEET 1 A 7 MET A 75 ALA A 78 0 SHEET 2 A 7 THR A 53 VAL A 58 1 N VAL A 56 O MET A 75 SHEET 3 A 7 VAL A 8 PRO A 13 1 N ALA A 10 O VAL A 55 SHEET 4 A 7 PHE A 102 VAL A 105 1 O LEU A 104 N ILE A 11 SHEET 5 A 7 GLN A 167 THR A 170 -1 O GLN A 167 N VAL A 105 SHEET 6 A 7 ALA A 131 PRO A 137 -1 N VAL A 132 O GLY A 168 SHEET 7 A 7 GLN A 205 ASP A 208 1 O GLN A 205 N ALA A 131 SHEET 1 B 9 MET A 75 ALA A 78 0 SHEET 2 B 9 THR A 53 VAL A 58 1 N VAL A 56 O MET A 75 SHEET 3 B 9 VAL A 8 PRO A 13 1 N ALA A 10 O VAL A 55 SHEET 4 B 9 PHE A 102 VAL A 105 1 O LEU A 104 N ILE A 11 SHEET 5 B 9 GLN A 167 THR A 170 -1 O GLN A 167 N VAL A 105 SHEET 6 B 9 ALA A 131 PRO A 137 -1 N VAL A 132 O GLY A 168 SHEET 7 B 9 LEU A 160 VAL A 163 -1 O ALA A 162 N LEU A 136 SHEET 8 B 9 THR B 141 VAL B 145 -1 O THR B 141 N VAL A 163 SHEET 9 B 9 VAL B 151 GLY B 153 -1 O LEU B 152 N ALA B 144 SHEET 1 C 2 GLN A 31 LEU A 32 0 SHEET 2 C 2 GLN A 35 THR A 36 -1 O GLN A 35 N LEU A 32 SHEET 1 D 9 VAL A 151 GLY A 153 0 SHEET 2 D 9 THR A 141 VAL A 145 -1 N ALA A 144 O LEU A 152 SHEET 3 D 9 LEU B 160 VAL B 163 -1 O VAL B 163 N THR A 141 SHEET 4 D 9 ALA B 131 LEU B 136 -1 N LEU B 136 O ALA B 162 SHEET 5 D 9 GLN B 167 THR B 170 -1 O GLY B 168 N VAL B 132 SHEET 6 D 9 PHE B 102 VAL B 105 -1 N VAL B 103 O PHE B 169 SHEET 7 D 9 VAL B 8 PRO B 13 1 N ILE B 11 O LEU B 104 SHEET 8 D 9 THR B 53 VAL B 58 1 O THR B 53 N ALA B 10 SHEET 9 D 9 MET B 75 ALA B 78 1 O MET B 75 N VAL B 56 SHEET 1 E 5 VAL A 151 GLY A 153 0 SHEET 2 E 5 THR A 141 VAL A 145 -1 N ALA A 144 O LEU A 152 SHEET 3 E 5 LEU B 160 VAL B 163 -1 O VAL B 163 N THR A 141 SHEET 4 E 5 ALA B 131 LEU B 136 -1 N LEU B 136 O ALA B 162 SHEET 5 E 5 GLN B 205 ASP B 208 1 O GLN B 205 N ALA B 131 SHEET 1 F 2 GLN B 31 LEU B 32 0 SHEET 2 F 2 GLN B 35 THR B 36 -1 O GLN B 35 N LEU B 32 LINK O HOH A 361 MG MG A 600 1555 1555 2.38 LINK O HOH A 362 MG MG A 600 1555 1555 2.98 LINK O3G CTP A 500 MG MG A 600 1555 1555 2.66 LINK O3A CTP A 500 MG MG A 600 1555 1555 2.81 LINK O1B CTP A 500 MG MG A 600 1555 1555 2.84 LINK MG MG B 232 O HOH B 337 1555 1555 2.46 LINK MG MG B 232 O3G CTP B 500 1555 1555 2.70 LINK MG MG B 232 O3A CTP B 500 1555 1555 2.80 LINK MG MG B 232 O1B CTP B 500 1555 1555 2.88 CISPEP 1 THR A 165 PRO A 166 0 6.14 CISPEP 2 ALA B 147 ASN B 148 0 19.06 CISPEP 3 THR B 165 PRO B 166 0 3.62 SITE 1 AC1 3 HOH A 361 HOH A 362 CTP A 500 SITE 1 AC2 25 PRO A 13 ALA A 14 ALA A 15 GLY A 16 SITE 2 AC2 25 GLY A 18 GLU A 19 ARG A 20 LYS A 27 SITE 3 AC2 25 GLY A 80 SER A 81 ASN A 82 ARG A 83 SITE 4 AC2 25 THR A 86 ASP A 107 ALA A 108 ALA A 109 SITE 5 AC2 25 LYS A 215 HOH A 233 HOH A 243 HOH A 264 SITE 6 AC2 25 HOH A 306 HOH A 308 HOH A 368 HOH A 387 SITE 7 AC2 25 MG A 600 SITE 1 AC3 23 PRO B 13 ALA B 14 ALA B 15 GLY B 16 SITE 2 AC3 23 SER B 17 GLY B 18 GLU B 19 ARG B 20 SITE 3 AC3 23 LYS B 27 GLY B 80 SER B 81 ASN B 82 SITE 4 AC3 23 ARG B 83 THR B 86 ASP B 107 ALA B 108 SITE 5 AC3 23 ALA B 109 LYS B 215 MG B 232 HOH B 251 SITE 6 AC3 23 HOH B 338 HOH B 371 HOH B 389 SITE 1 AC4 2 HOH B 337 CTP B 500 CRYST1 55.214 76.756 131.538 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007602 0.00000