HEADER TRANSFERASE 05-JAN-11 3Q80 TITLE STRUCTURE OF MTB 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE TITLE 2 CYTIDYLTRANSFERASE (ISPD) COMPLEXED WITH CDP-ME COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP COMPND 5 CYTIDYLYLTRANSFERASE, MCT; COMPND 6 EC: 2.7.7.60; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ISPD, RV3582C, MT3688, MTCY06G11.29C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, ROSSMANN FOLD, 2-C-METHYL- KEYWDS 2 D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,J.B.BRUNING,C.THURMAN,T.R.IOERGER,J.C.SACCHETTINI,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 13-SEP-23 3Q80 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3Q80 1 REMARK REVDAT 2 12-NOV-14 3Q80 1 KEYWDS REVDAT 1 04-MAY-11 3Q80 0 JRNL AUTH M.C.M.REDDY,J.B.BRUNING,C.THURMAN,T.R.IOERGER, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE JRNL TITL 3 (ISPD): A CANDIDATE ANTITUBERCULAR DRUG TARGET JRNL REF PROTEINS 2011 JRNL REFN ESSN 1097-0134 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 36029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7980 - 4.6884 0.97 2982 169 0.1612 0.1879 REMARK 3 2 4.6884 - 3.7254 0.98 2867 177 0.1425 0.1665 REMARK 3 3 3.7254 - 3.2557 0.99 2870 141 0.1691 0.1925 REMARK 3 4 3.2557 - 2.9585 0.99 2856 149 0.1836 0.2328 REMARK 3 5 2.9585 - 2.7468 1.00 2875 128 0.1792 0.2288 REMARK 3 6 2.7468 - 2.5850 1.00 2844 146 0.1738 0.1967 REMARK 3 7 2.5850 - 2.4557 1.00 2853 143 0.1587 0.2284 REMARK 3 8 2.4557 - 2.3488 1.00 2850 136 0.1544 0.2072 REMARK 3 9 2.3488 - 2.2585 1.00 2816 171 0.1630 0.2313 REMARK 3 10 2.2585 - 2.1806 0.91 2557 143 0.1637 0.2230 REMARK 3 11 2.1806 - 2.1125 0.79 2244 118 0.1868 0.2397 REMARK 3 12 2.1125 - 2.0521 0.69 1952 108 0.1963 0.2688 REMARK 3 13 2.0521 - 2.0000 0.58 1657 77 0.2156 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23070 REMARK 3 B22 (A**2) : 0.05300 REMARK 3 B33 (A**2) : 0.17770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3351 REMARK 3 ANGLE : 1.126 4610 REMARK 3 CHIRALITY : 0.069 575 REMARK 3 PLANARITY : 0.004 592 REMARK 3 DIHEDRAL : 19.401 1287 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:63) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7624 -31.1111 27.1983 REMARK 3 T TENSOR REMARK 3 T11: 0.2147 T22: 0.2488 REMARK 3 T33: 0.2136 T12: 0.0063 REMARK 3 T13: 0.0284 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.6645 L22: 2.1694 REMARK 3 L33: 0.5330 L12: -0.1855 REMARK 3 L13: 0.6443 L23: 0.3639 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.1484 S13: -0.0047 REMARK 3 S21: 0.1129 S22: 0.0434 S23: -0.1890 REMARK 3 S31: 0.0505 S32: -0.0269 S33: -0.0220 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 64:95) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4833 -35.6449 21.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.2732 REMARK 3 T33: 0.3309 T12: 0.0360 REMARK 3 T13: 0.0795 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0099 L22: 0.5634 REMARK 3 L33: 0.5810 L12: 0.2195 REMARK 3 L13: -0.4346 L23: 0.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: -0.0296 S13: -0.1012 REMARK 3 S21: -0.0976 S22: -0.1035 S23: -0.4468 REMARK 3 S31: -0.0516 S32: 0.3023 S33: -0.0052 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 100:138) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5973 -35.6994 19.1746 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.2402 REMARK 3 T33: 0.2619 T12: -0.0184 REMARK 3 T13: -0.0173 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.0259 L22: 0.6141 REMARK 3 L33: 1.1259 L12: -0.7059 REMARK 3 L13: 0.4784 L23: -0.4833 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.0274 S13: -0.2654 REMARK 3 S21: -0.2681 S22: -0.0694 S23: 0.1245 REMARK 3 S31: 0.2591 S32: -0.1062 S33: -0.0314 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 139:175) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6936 -21.0627 10.6848 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.2114 REMARK 3 T33: 0.1664 T12: 0.0020 REMARK 3 T13: -0.0195 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 1.4590 REMARK 3 L33: 1.0083 L12: -0.4749 REMARK 3 L13: -0.2358 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.1438 S12: 0.0353 S13: -0.0701 REMARK 3 S21: -0.5610 S22: -0.0071 S23: 0.1136 REMARK 3 S31: 0.0378 S32: -0.0335 S33: -0.0969 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 176:222) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6513 -28.6234 13.0044 REMARK 3 T TENSOR REMARK 3 T11: 0.4185 T22: 0.2464 REMARK 3 T33: 0.2136 T12: 0.0056 REMARK 3 T13: 0.0022 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.7978 L22: 1.8617 REMARK 3 L33: 0.6215 L12: -0.3371 REMARK 3 L13: 0.8570 L23: -0.1082 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.1500 S13: -0.0388 REMARK 3 S21: -0.6270 S22: -0.1025 S23: 0.0492 REMARK 3 S31: 0.0771 S32: -0.0278 S33: 0.0264 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 223:231) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4985 -21.3481 37.3151 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.4183 REMARK 3 T33: 0.2265 T12: -0.0256 REMARK 3 T13: -0.0264 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.8185 L22: 4.6202 REMARK 3 L33: 3.9381 L12: 4.7185 REMARK 3 L13: -4.3554 L23: -4.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -1.5758 S13: -0.1323 REMARK 3 S21: 1.3471 S22: -0.6465 S23: 0.0150 REMARK 3 S31: -0.5602 S32: 0.9126 S33: 0.6046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 6:53) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8712 -3.1901 30.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.2633 REMARK 3 T33: 0.2084 T12: 0.0074 REMARK 3 T13: -0.0203 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.7560 L22: 2.0305 REMARK 3 L33: 0.7005 L12: -0.5565 REMARK 3 L13: -0.0996 L23: 0.4143 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.2098 S13: 0.1342 REMARK 3 S21: 0.1255 S22: 0.1670 S23: 0.2215 REMARK 3 S31: -0.0691 S32: -0.0385 S33: -0.0822 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 54:119) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6292 1.5736 24.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1566 REMARK 3 T33: 0.2017 T12: 0.0141 REMARK 3 T13: -0.0499 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.8728 L22: 2.1769 REMARK 3 L33: 1.2399 L12: -0.9745 REMARK 3 L13: -0.3063 L23: 0.7940 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.0046 S13: 0.0515 REMARK 3 S21: -0.2082 S22: -0.0732 S23: 0.2455 REMARK 3 S31: -0.2411 S32: -0.1487 S33: 0.0564 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 120:129) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1984 7.6829 15.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.3592 REMARK 3 T33: 0.4819 T12: -0.0794 REMARK 3 T13: 0.0626 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 5.7575 L22: 4.2411 REMARK 3 L33: 7.9941 L12: 2.4886 REMARK 3 L13: -5.0106 L23: -2.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.2675 S12: -0.4299 S13: 0.7602 REMARK 3 S21: -0.4218 S22: -0.4102 S23: -1.0281 REMARK 3 S31: -0.6664 S32: 0.9871 S33: 0.0770 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 130:186) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7766 -9.4839 10.5965 REMARK 3 T TENSOR REMARK 3 T11: 0.3806 T22: 0.2596 REMARK 3 T33: 0.2053 T12: 0.0080 REMARK 3 T13: -0.0165 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.7355 L22: 1.3932 REMARK 3 L33: 1.1076 L12: 0.0112 REMARK 3 L13: 0.2076 L23: 0.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.1142 S13: 0.1231 REMARK 3 S21: -0.6552 S22: 0.0104 S23: -0.0721 REMARK 3 S31: -0.1055 S32: 0.0203 S33: -0.0793 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 187:220) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9512 -6.5574 15.0889 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.2641 REMARK 3 T33: 0.2038 T12: -0.0075 REMARK 3 T13: -0.0258 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.7239 L22: 1.4824 REMARK 3 L33: 0.4346 L12: -0.4540 REMARK 3 L13: -0.4491 L23: 0.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0618 S13: 0.0440 REMARK 3 S21: -0.4531 S22: -0.0825 S23: -0.0084 REMARK 3 S31: 0.0423 S32: -0.0353 S33: 0.0136 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 221:231) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6488 -12.9354 36.6146 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.3119 REMARK 3 T33: 0.2235 T12: 0.0203 REMARK 3 T13: 0.0208 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 7.3527 L22: 5.1681 REMARK 3 L33: 0.7764 L12: 0.2196 REMARK 3 L13: -2.1487 L23: -0.7651 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.9058 S13: 0.1139 REMARK 3 S21: 0.4165 S22: 0.1477 S23: 0.3044 REMARK 3 S31: 0.1874 S32: 0.0647 S33: -0.0755 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : 0.26300 REMARK 200 FOR SHELL : 4.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1I52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS 8.5, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.79050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.21050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.33400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.21050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.79050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.33400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 96 REMARK 465 THR A 97 REMARK 465 ALA A 98 REMARK 465 ASP A 184 REMARK 465 LEU A 185 REMARK 465 PRO A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 VAL B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 465 SER B 95 REMARK 465 GLY B 96 REMARK 465 THR B 97 REMARK 465 ALA B 98 REMARK 465 GLY B 181 REMARK 465 SER B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 95 OG REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LEU B 185 CG CD1 CD2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 110 59.12 -94.80 REMARK 500 GLN A 164 -163.51 -113.91 REMARK 500 ARG B 110 56.78 -95.12 REMARK 500 GLN B 164 -163.22 -112.24 REMARK 500 GLU B 189 71.61 100.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 328 O REMARK 620 2 HOH A 385 O 121.9 REMARK 620 3 HOH A 386 O 74.2 77.5 REMARK 620 4 HOH A 414 O 70.6 81.5 119.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 278 O REMARK 620 2 HOH B 390 O 96.5 REMARK 620 3 HOH B 391 O 93.6 93.0 REMARK 620 4 HOH B 392 O 93.7 168.9 90.7 REMARK 620 5 HOH B 394 O 87.8 89.9 176.6 86.1 REMARK 620 6 CDM B 501 O2A 171.9 85.1 94.3 84.1 84.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKR RELATED DB: PDB REMARK 900 APO MTB ISPD REMARK 900 RELATED ID: 3Q7U RELATED DB: PDB REMARK 900 MTB ISPD COMPLEXED WITH CTP DBREF 3Q80 A 1 231 UNP P96864 ISPD_MYCTU 1 231 DBREF 3Q80 B 1 231 UNP P96864 ISPD_MYCTU 1 231 SEQADV 3Q80 VAL A 1 UNP P96864 MET 1 CONFLICT SEQADV 3Q80 VAL B 1 UNP P96864 MET 1 CONFLICT SEQRES 1 A 231 VAL VAL ARG GLU ALA GLY GLU VAL VAL ALA ILE VAL PRO SEQRES 2 A 231 ALA ALA GLY SER GLY GLU ARG LEU ALA VAL GLY VAL PRO SEQRES 3 A 231 LYS ALA PHE TYR GLN LEU ASP GLY GLN THR LEU ILE GLU SEQRES 4 A 231 ARG ALA VAL ASP GLY LEU LEU ASP SER GLY VAL VAL ASP SEQRES 5 A 231 THR VAL VAL VAL ALA VAL PRO ALA ASP ARG THR ASP GLU SEQRES 6 A 231 ALA ARG GLN ILE LEU GLY HIS ARG ALA MET ILE VAL ALA SEQRES 7 A 231 GLY GLY SER ASN ARG THR ASP THR VAL ASN LEU ALA LEU SEQRES 8 A 231 THR VAL LEU SER GLY THR ALA GLU PRO GLU PHE VAL LEU SEQRES 9 A 231 VAL HIS ASP ALA ALA ARG ALA LEU THR PRO PRO ALA LEU SEQRES 10 A 231 VAL ALA ARG VAL VAL GLU ALA LEU ARG ASP GLY TYR ALA SEQRES 11 A 231 ALA VAL VAL PRO VAL LEU PRO LEU SER ASP THR ILE LYS SEQRES 12 A 231 ALA VAL ASP ALA ASN GLY VAL VAL LEU GLY THR PRO GLU SEQRES 13 A 231 ARG ALA GLY LEU ARG ALA VAL GLN THR PRO GLN GLY PHE SEQRES 14 A 231 THR THR ASP LEU LEU LEU ARG SER TYR GLN ARG GLY SER SEQRES 15 A 231 LEU ASP LEU PRO ALA ALA GLU TYR THR ASP ASP ALA SER SEQRES 16 A 231 LEU VAL GLU HIS ILE GLY GLY GLN VAL GLN VAL VAL ASP SEQRES 17 A 231 GLY ASP PRO LEU ALA PHE LYS ILE THR THR LYS LEU ASP SEQRES 18 A 231 LEU LEU LEU ALA GLN ALA ILE VAL ARG GLY SEQRES 1 B 231 VAL VAL ARG GLU ALA GLY GLU VAL VAL ALA ILE VAL PRO SEQRES 2 B 231 ALA ALA GLY SER GLY GLU ARG LEU ALA VAL GLY VAL PRO SEQRES 3 B 231 LYS ALA PHE TYR GLN LEU ASP GLY GLN THR LEU ILE GLU SEQRES 4 B 231 ARG ALA VAL ASP GLY LEU LEU ASP SER GLY VAL VAL ASP SEQRES 5 B 231 THR VAL VAL VAL ALA VAL PRO ALA ASP ARG THR ASP GLU SEQRES 6 B 231 ALA ARG GLN ILE LEU GLY HIS ARG ALA MET ILE VAL ALA SEQRES 7 B 231 GLY GLY SER ASN ARG THR ASP THR VAL ASN LEU ALA LEU SEQRES 8 B 231 THR VAL LEU SER GLY THR ALA GLU PRO GLU PHE VAL LEU SEQRES 9 B 231 VAL HIS ASP ALA ALA ARG ALA LEU THR PRO PRO ALA LEU SEQRES 10 B 231 VAL ALA ARG VAL VAL GLU ALA LEU ARG ASP GLY TYR ALA SEQRES 11 B 231 ALA VAL VAL PRO VAL LEU PRO LEU SER ASP THR ILE LYS SEQRES 12 B 231 ALA VAL ASP ALA ASN GLY VAL VAL LEU GLY THR PRO GLU SEQRES 13 B 231 ARG ALA GLY LEU ARG ALA VAL GLN THR PRO GLN GLY PHE SEQRES 14 B 231 THR THR ASP LEU LEU LEU ARG SER TYR GLN ARG GLY SER SEQRES 15 B 231 LEU ASP LEU PRO ALA ALA GLU TYR THR ASP ASP ALA SER SEQRES 16 B 231 LEU VAL GLU HIS ILE GLY GLY GLN VAL GLN VAL VAL ASP SEQRES 17 B 231 GLY ASP PRO LEU ALA PHE LYS ILE THR THR LYS LEU ASP SEQRES 18 B 231 LEU LEU LEU ALA GLN ALA ILE VAL ARG GLY HET CDM A 500 33 HET MG A 232 1 HET CL A 233 1 HET CL A 234 1 HET CDM B 501 33 HET MG B 232 1 HET CL B 233 1 HET CL B 234 1 HETNAM CDM 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CDM 2(C14 H25 N3 O14 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 CL 4(CL 1-) FORMUL 11 HOH *357(H2 O) HELIX 1 1 PRO A 26 PHE A 29 5 4 HELIX 2 2 LEU A 37 SER A 48 1 12 HELIX 3 3 PRO A 59 ASP A 61 5 3 HELIX 4 4 ARG A 62 GLY A 71 1 10 HELIX 5 5 HIS A 72 ALA A 74 5 3 HELIX 6 6 ASN A 82 THR A 92 1 11 HELIX 7 7 VAL A 93 SER A 95 5 3 HELIX 8 8 PRO A 114 ASP A 127 1 14 HELIX 9 9 GLU A 156 ALA A 158 5 3 HELIX 10 10 THR A 171 SER A 182 1 12 HELIX 11 11 ASP A 193 ILE A 200 1 8 HELIX 12 12 ASP A 210 PHE A 214 5 5 HELIX 13 13 THR A 218 GLY A 231 1 14 HELIX 14 14 PRO B 26 PHE B 29 5 4 HELIX 15 15 LEU B 37 SER B 48 1 12 HELIX 16 16 PRO B 59 ASP B 61 5 3 HELIX 17 17 ARG B 62 GLY B 71 1 10 HELIX 18 18 HIS B 72 ALA B 74 5 3 HELIX 19 19 ASN B 82 VAL B 93 1 12 HELIX 20 20 PRO B 114 ASP B 127 1 14 HELIX 21 21 GLU B 156 ALA B 158 5 3 HELIX 22 22 THR B 171 ARG B 180 1 10 HELIX 23 23 ASP B 193 ILE B 200 1 8 HELIX 24 24 ASP B 210 PHE B 214 5 5 HELIX 25 25 THR B 218 GLY B 231 1 14 SHEET 1 A 7 MET A 75 ALA A 78 0 SHEET 2 A 7 THR A 53 VAL A 58 1 N VAL A 56 O MET A 75 SHEET 3 A 7 VAL A 8 PRO A 13 1 N VAL A 12 O VAL A 55 SHEET 4 A 7 PHE A 102 VAL A 105 1 O LEU A 104 N ILE A 11 SHEET 5 A 7 GLN A 167 THR A 170 -1 O PHE A 169 N VAL A 103 SHEET 6 A 7 ALA A 131 LEU A 136 -1 N VAL A 132 O GLY A 168 SHEET 7 A 7 GLN A 205 ASP A 208 1 O GLN A 205 N ALA A 131 SHEET 1 B 9 MET A 75 ALA A 78 0 SHEET 2 B 9 THR A 53 VAL A 58 1 N VAL A 56 O MET A 75 SHEET 3 B 9 VAL A 8 PRO A 13 1 N VAL A 12 O VAL A 55 SHEET 4 B 9 PHE A 102 VAL A 105 1 O LEU A 104 N ILE A 11 SHEET 5 B 9 GLN A 167 THR A 170 -1 O PHE A 169 N VAL A 103 SHEET 6 B 9 ALA A 131 LEU A 136 -1 N VAL A 132 O GLY A 168 SHEET 7 B 9 LEU A 160 VAL A 163 -1 O ALA A 162 N LEU A 136 SHEET 8 B 9 ILE B 142 VAL B 145 -1 O LYS B 143 N ARG A 161 SHEET 9 B 9 VAL B 151 GLY B 153 -1 O LEU B 152 N ALA B 144 SHEET 1 C 2 GLN A 31 LEU A 32 0 SHEET 2 C 2 GLN A 35 THR A 36 -1 O GLN A 35 N LEU A 32 SHEET 1 D 9 VAL A 151 GLY A 153 0 SHEET 2 D 9 ILE A 142 VAL A 145 -1 N ALA A 144 O LEU A 152 SHEET 3 D 9 LEU B 160 VAL B 163 -1 O ARG B 161 N LYS A 143 SHEET 4 D 9 ALA B 131 LEU B 136 -1 N LEU B 136 O ALA B 162 SHEET 5 D 9 GLN B 167 THR B 170 -1 O GLY B 168 N VAL B 132 SHEET 6 D 9 PHE B 102 VAL B 105 -1 N VAL B 103 O PHE B 169 SHEET 7 D 9 VAL B 8 PRO B 13 1 N ILE B 11 O LEU B 104 SHEET 8 D 9 THR B 53 VAL B 58 1 O VAL B 55 N ALA B 10 SHEET 9 D 9 MET B 75 ALA B 78 1 O MET B 75 N VAL B 56 SHEET 1 E 5 VAL A 151 GLY A 153 0 SHEET 2 E 5 ILE A 142 VAL A 145 -1 N ALA A 144 O LEU A 152 SHEET 3 E 5 LEU B 160 VAL B 163 -1 O ARG B 161 N LYS A 143 SHEET 4 E 5 ALA B 131 LEU B 136 -1 N LEU B 136 O ALA B 162 SHEET 5 E 5 GLN B 205 ASP B 208 1 O GLN B 205 N ALA B 131 SHEET 1 F 2 GLN B 31 LEU B 32 0 SHEET 2 F 2 GLN B 35 THR B 36 -1 O GLN B 35 N LEU B 32 LINK MG MG A 232 O HOH A 328 1555 1555 2.60 LINK MG MG A 232 O HOH A 385 1555 1555 2.57 LINK MG MG A 232 O HOH A 386 1555 1555 2.94 LINK MG MG A 232 O HOH A 414 1555 1555 2.69 LINK MG MG B 232 O HOH B 278 1555 1555 2.20 LINK MG MG B 232 O HOH B 390 1555 1555 2.21 LINK MG MG B 232 O HOH B 391 1555 1555 2.28 LINK MG MG B 232 O HOH B 392 1555 1555 2.21 LINK MG MG B 232 O HOH B 394 1555 1555 2.29 LINK MG MG B 232 O2A CDM B 501 1555 1555 2.07 CISPEP 1 THR A 165 PRO A 166 0 6.83 CISPEP 2 THR B 165 PRO B 166 0 3.91 CISPEP 3 ALA B 188 GLU B 189 0 4.95 SITE 1 AC1 32 PRO A 13 ALA A 14 ALA A 15 GLY A 16 SITE 2 AC1 32 LYS A 27 GLY A 80 SER A 81 ASN A 82 SITE 3 AC1 32 ARG A 83 THR A 86 ASP A 107 ALA A 108 SITE 4 AC1 32 ALA A 109 ARG A 110 VAL A 163 THR A 191 SITE 5 AC1 32 ASP A 192 LYS A 215 MG A 232 HOH A 265 SITE 6 AC1 32 HOH A 269 HOH A 328 HOH A 385 HOH A 386 SITE 7 AC1 32 HOH A 388 HOH A 391 HOH A 399 HOH A 404 SITE 8 AC1 32 HOH A 414 ASP B 140 THR B 141 ARG B 157 SITE 1 AC2 5 HOH A 328 HOH A 385 HOH A 386 HOH A 414 SITE 2 AC2 5 CDM A 500 SITE 1 AC3 6 GLY A 16 SER A 17 GLY A 18 HOH A 386 SITE 2 AC3 6 HOH A 403 HOH A 404 SITE 1 AC4 4 SER A 17 GLU A 19 ARG A 20 HOH A 328 SITE 1 AC5 33 ASP A 140 THR A 141 ARG A 157 HOH A 336 SITE 2 AC5 33 HOH A 382 PRO B 13 ALA B 14 ALA B 15 SITE 3 AC5 33 GLY B 16 LYS B 27 GLY B 80 SER B 81 SITE 4 AC5 33 ASN B 82 ARG B 83 THR B 86 ASP B 107 SITE 5 AC5 33 ALA B 108 ALA B 109 ARG B 110 VAL B 163 SITE 6 AC5 33 THR B 165 THR B 191 LYS B 215 MG B 232 SITE 7 AC5 33 CL B 233 HOH B 253 HOH B 274 HOH B 343 SITE 8 AC5 33 HOH B 380 HOH B 390 HOH B 391 HOH B 392 SITE 9 AC5 33 HOH B 394 SITE 1 AC6 6 HOH B 278 HOH B 390 HOH B 391 HOH B 392 SITE 2 AC6 6 HOH B 394 CDM B 501 SITE 1 AC7 6 GLY B 16 SER B 17 GLY B 18 LYS B 27 SITE 2 AC7 6 HOH B 390 CDM B 501 SITE 1 AC8 6 GLY B 18 GLU B 19 ARG B 20 LEU B 21 SITE 2 AC8 6 LYS B 27 HOH B 381 CRYST1 41.581 92.668 146.421 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006830 0.00000