HEADER TRANSFERASE 07-JAN-11 3Q8U TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS NUCLEOSIDE DIPHOSPHATE TITLE 2 KINASE COMPLEXED WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 2.7.4.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: NDK, SACOL1509; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS FERRIDOXIN FOLD, ALPHA-BETA PROTEIN FAMILY, NUCLEOSIDE DIPHOSPHATE KEYWDS 2 KINASES (NDKS) CATALYZE THE TRANSFER OF A GAMMA PHOSPHATE FROM KEYWDS 3 NUCLEOSIDE TRIPHOSPHATES TO NUCLEOSIDE DIPHOSPHATE, NUCLEOTIDE KEYWDS 4 BINDING, MAGNESIUM, METAL BINDING, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.SRIVASTAVA,K.RAJASREE,B.GOPAL REVDAT 3 01-NOV-23 3Q8U 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 3Q8U 1 JRNL REVDAT 1 27-JUL-11 3Q8U 0 JRNL AUTH S.K.SRIVASTAVA,K.RAJASREE,B.GOPAL JRNL TITL CONFORMATIONAL BASIS FOR SUBSTRATE RECOGNITION AND JRNL TITL 2 REGULATION OF CATALYTIC ACTIVITY IN STAPHYLOCOCCUS AUREUS JRNL TITL 3 NUCLEOSIDE DI-PHOSPHATE KINASE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1814 1349 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 21745603 JRNL DOI 10.1016/J.BBAPAP.2011.06.008 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 42078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7268 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9877 ; 2.000 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 888 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;35.428 ;23.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1210 ;16.884 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;21.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1086 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5462 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4434 ; 0.853 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7157 ; 1.587 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2834 ; 2.806 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2720 ; 4.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 149 4 REMARK 3 1 B 1 B 149 4 REMARK 3 1 C 1 C 149 4 REMARK 3 1 D 1 D 149 4 REMARK 3 1 E 1 E 149 4 REMARK 3 1 F 1 F 149 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1150 ; 0.31 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1150 ; 0.33 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1150 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1150 ; 0.27 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 1150 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 F (A): 1150 ; 0.24 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1150 ; 1.60 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1150 ; 1.41 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1150 ; 1.13 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1150 ; 1.45 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 1150 ; 1.90 ; 2.00 REMARK 3 MEDIUM THERMAL 1 F (A**2): 1150 ; 1.67 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CUK (ALPHA) REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 34.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 6.5, 25% PEG 2000, REMARK 280 MICROBATCH CRYSTALLIZATION, TEMPERATURE 298K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.53250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.53250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 150 REMARK 465 GLU A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 LEU B 150 REMARK 465 GLU B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 LEU C 150 REMARK 465 GLU C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 LEU D 150 REMARK 465 GLU D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 465 HIS D 155 REMARK 465 HIS D 156 REMARK 465 HIS D 157 REMARK 465 LEU E 150 REMARK 465 GLU E 151 REMARK 465 HIS E 152 REMARK 465 HIS E 153 REMARK 465 HIS E 154 REMARK 465 HIS E 155 REMARK 465 HIS E 156 REMARK 465 HIS E 157 REMARK 465 LEU F 150 REMARK 465 GLU F 151 REMARK 465 HIS F 152 REMARK 465 HIS F 153 REMARK 465 HIS F 154 REMARK 465 HIS F 155 REMARK 465 HIS F 156 REMARK 465 HIS F 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 133 CD OE1 OE2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 GLU C 121 CD OE1 OE2 REMARK 470 GLU C 149 CG CD OE1 OE2 REMARK 470 GLU D 133 CG CD OE1 OE2 REMARK 470 GLU E 133 CD OE1 OE2 REMARK 470 GLU E 149 CG CD OE1 OE2 REMARK 470 GLU F 133 CD OE1 OE2 REMARK 470 GLU F 149 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 149 NH1 ARG F 111 1.55 REMARK 500 N GLY E 54 O HOH E 360 1.61 REMARK 500 CG MET A 1 O HOH A 397 1.70 REMARK 500 CG GLU F 133 O HOH F 349 1.83 REMARK 500 CB VAL B 75 O HOH B 392 1.86 REMARK 500 NE ARG B 85 O HOH B 417 1.87 REMARK 500 CB ASN F 82 O HOH F 434 1.91 REMARK 500 O HOH A 168 O HOH E 176 1.95 REMARK 500 O HOH B 171 O HOH B 420 1.96 REMARK 500 CB ALA E 145 O HOH E 388 1.96 REMARK 500 NE ARG E 111 O HOH E 177 1.98 REMARK 500 NE ARG A 111 O HOH A 415 1.99 REMARK 500 NE ARG B 111 O HOH B 366 2.00 REMARK 500 NE ARG D 111 O HOH D 403 2.01 REMARK 500 O HOH E 189 O HOH E 424 2.07 REMARK 500 CB SER F 122 O HOH F 430 2.07 REMARK 500 NH1 ARG F 15 O LEU F 105 2.10 REMARK 500 NE2 GLN A 39 O HOH A 356 2.11 REMARK 500 OE2 GLU C 46 O HOH C 438 2.13 REMARK 500 NH1 ARG A 111 O HOH A 415 2.13 REMARK 500 NE ARG C 111 O HOH C 329 2.13 REMARK 500 CB ASN A 82 O HOH A 414 2.14 REMARK 500 NH1 ARG B 111 O HOH B 366 2.16 REMARK 500 O HOH B 171 O HOH B 419 2.16 REMARK 500 CB ASN C 82 O HOH C 401 2.17 REMARK 500 O HOH E 183 O HOH E 410 2.18 REMARK 500 O HOH B 168 O HOH B 394 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 426 O HOH E 363 4455 1.12 REMARK 500 O HOH B 172 O HOH E 364 4455 1.28 REMARK 500 OE1 GLU A 133 ND1 HIS D 86 3544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 133 CD GLU A 133 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU A 107 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 15 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG C 15 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG C 102 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 102 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 15 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG D 102 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG E 15 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG E 15 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG E 102 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG F 15 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG F 102 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG F 102 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 113 -52.27 75.56 REMARK 500 GLN B 53 -39.06 -36.86 REMARK 500 ILE B 113 -53.76 82.68 REMARK 500 GLN C 53 -52.51 -25.48 REMARK 500 ILE C 113 -50.62 78.92 REMARK 500 ILE D 113 -59.38 81.94 REMARK 500 ILE E 113 -50.65 80.83 REMARK 500 GLN F 53 -37.22 -37.07 REMARK 500 ILE F 113 -50.44 72.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 54 LYS D 55 -149.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 159 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 158 O2A REMARK 620 2 ADP A 158 O1B 75.0 REMARK 620 3 HOH A 161 O 100.6 159.6 REMARK 620 4 HOH A 162 O 111.8 66.3 132.2 REMARK 620 5 HOH A 166 O 97.0 57.4 104.3 105.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 159 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD1 REMARK 620 2 ADP B 158 O2A 149.0 REMARK 620 3 ADP B 158 O3B 127.7 81.0 REMARK 620 4 HOH B 160 O 78.2 124.7 77.7 REMARK 620 5 HOH B 165 O 86.0 82.3 128.8 73.1 REMARK 620 6 HOH B 426 O 88.3 60.7 137.5 138.4 66.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 159 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP D 158 O2A REMARK 620 2 ADP D 158 O3B 77.7 REMARK 620 3 HOH D 160 O 107.1 160.6 REMARK 620 4 HOH D 161 O 110.7 70.9 122.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 159 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 118 OD1 REMARK 620 2 ADP E 158 O2A 157.6 REMARK 620 3 ADP E 158 O3B 121.8 80.4 REMARK 620 4 HOH E 165 O 80.0 108.3 67.8 REMARK 620 5 HOH E 169 O 72.5 86.6 161.9 128.9 REMARK 620 6 HOH E 170 O 90.1 104.8 62.6 112.8 109.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 159 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 118 OD1 REMARK 620 2 ADP F 158 O2A 159.0 REMARK 620 3 HOH F 428 O 86.5 73.7 REMARK 620 4 HOH F 429 O 109.3 78.0 89.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP E 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP F 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 159 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q83 RELATED DB: PDB REMARK 900 RELATED ID: 3Q86 RELATED DB: PDB REMARK 900 RELATED ID: 3Q89 RELATED DB: PDB REMARK 900 RELATED ID: 3Q8V RELATED DB: PDB REMARK 900 RELATED ID: 3Q8Y RELATED DB: PDB DBREF 3Q8U A 1 149 UNP Q5HFV4 NDK_STAAC 1 149 DBREF 3Q8U B 1 149 UNP Q5HFV4 NDK_STAAC 1 149 DBREF 3Q8U C 1 149 UNP Q5HFV4 NDK_STAAC 1 149 DBREF 3Q8U D 1 149 UNP Q5HFV4 NDK_STAAC 1 149 DBREF 3Q8U E 1 149 UNP Q5HFV4 NDK_STAAC 1 149 DBREF 3Q8U F 1 149 UNP Q5HFV4 NDK_STAAC 1 149 SEQADV 3Q8U LEU A 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU A 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS A 157 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U LEU B 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU B 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS B 157 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U LEU C 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU C 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS C 157 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U LEU D 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU D 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS D 157 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U LEU E 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU E 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS E 157 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U LEU F 150 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U GLU F 151 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 152 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 153 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 154 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 155 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 156 UNP Q5HFV4 EXPRESSION TAG SEQADV 3Q8U HIS F 157 UNP Q5HFV4 EXPRESSION TAG SEQRES 1 A 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 A 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 A 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 A 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 A 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 A 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 A 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 A 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 A 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 A 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 A 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 A 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 A 157 HIS SEQRES 1 B 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 B 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 B 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 B 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 B 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 B 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 B 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 B 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 B 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 B 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 B 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 B 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 B 157 HIS SEQRES 1 C 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 C 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 C 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 C 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 C 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 C 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 C 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 C 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 C 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 C 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 C 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 C 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 C 157 HIS SEQRES 1 D 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 D 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 D 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 D 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 D 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 D 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 D 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 D 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 D 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 D 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 D 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 D 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 D 157 HIS SEQRES 1 E 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 E 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 E 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 E 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 E 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 E 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 E 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 E 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 E 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 E 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 E 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 E 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 E 157 HIS SEQRES 1 F 157 MET GLU ARG THR PHE LEU MET ILE LYS PRO ASP ALA VAL SEQRES 2 F 157 GLN ARG ASN LEU ILE GLY GLU VAL ILE SER ARG ILE GLU SEQRES 3 F 157 ARG LYS GLY LEU LYS LEU VAL GLY GLY LYS LEU MET GLN SEQRES 4 F 157 VAL PRO MET GLU LEU ALA GLU THR HIS TYR GLY GLU HIS SEQRES 5 F 157 GLN GLY LYS PRO PHE TYR ASN ASP LEU ILE SER PHE ILE SEQRES 6 F 157 THR SER ALA PRO VAL PHE ALA MET VAL VAL GLU GLY GLU SEQRES 7 F 157 ASP ALA VAL ASN VAL SER ARG HIS ILE ILE GLY SER THR SEQRES 8 F 157 ASN PRO SER GLU ALA SER PRO GLY SER ILE ARG GLY ASP SEQRES 9 F 157 LEU GLY LEU THR VAL GLY ARG ASN ILE ILE HIS GLY SER SEQRES 10 F 157 ASP SER LEU GLU SER ALA GLU ARG GLU ILE ASN LEU TRP SEQRES 11 F 157 PHE ASN GLU ASN GLU ILE THR SER TYR ALA SER PRO ARG SEQRES 12 F 157 ASP ALA TRP LEU TYR GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 13 F 157 HIS HET ADP A 158 27 HET MG A 159 1 HET ADP B 158 27 HET MG B 159 1 HET ADP C 158 27 HET ADP D 158 27 HET MG D 159 1 HET ADP E 158 27 HET MG E 159 1 HET ADP F 158 27 HET MG F 159 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 7 ADP 6(C10 H15 N5 O10 P2) FORMUL 8 MG 5(MG 2+) FORMUL 18 HOH *441(H2 O) HELIX 1 1 LYS A 9 ARG A 15 1 7 HELIX 2 2 LEU A 17 LYS A 28 1 12 HELIX 3 3 PRO A 41 TYR A 49 1 9 HELIX 4 4 GLY A 50 GLN A 53 5 4 HELIX 5 5 PHE A 57 THR A 66 1 10 HELIX 6 6 ASP A 79 GLY A 89 1 11 HELIX 7 7 SER A 100 GLY A 106 1 7 HELIX 8 8 SER A 119 PHE A 131 1 13 HELIX 9 9 ASN A 132 ILE A 136 5 5 HELIX 10 10 ARG A 143 TYR A 148 1 6 HELIX 11 11 LYS B 9 ARG B 15 1 7 HELIX 12 12 LEU B 17 LYS B 28 1 12 HELIX 13 13 PRO B 41 TYR B 49 1 9 HELIX 14 14 GLY B 50 GLN B 53 5 4 HELIX 15 15 PHE B 57 THR B 66 1 10 HELIX 16 16 ASP B 79 GLY B 89 1 11 HELIX 17 17 SER B 100 GLY B 106 1 7 HELIX 18 18 SER B 119 PHE B 131 1 13 HELIX 19 19 ASN B 132 ILE B 136 5 5 HELIX 20 20 ARG B 143 TYR B 148 1 6 HELIX 21 21 LYS C 9 ARG C 15 1 7 HELIX 22 22 LEU C 17 LYS C 28 1 12 HELIX 23 23 PRO C 41 TYR C 49 1 9 HELIX 24 24 GLY C 50 GLN C 53 5 4 HELIX 25 25 PHE C 57 THR C 66 1 10 HELIX 26 26 ASP C 79 GLY C 89 1 11 HELIX 27 27 SER C 100 GLY C 106 1 7 HELIX 28 28 SER C 119 PHE C 131 1 13 HELIX 29 29 ASN C 132 ILE C 136 5 5 HELIX 30 30 ARG C 143 TYR C 148 1 6 HELIX 31 31 LYS D 9 ARG D 15 1 7 HELIX 32 32 LEU D 17 LYS D 28 1 12 HELIX 33 33 PRO D 41 TYR D 49 1 9 HELIX 34 34 GLY D 50 GLN D 53 5 4 HELIX 35 35 PHE D 57 THR D 66 1 10 HELIX 36 36 ASP D 79 GLY D 89 1 11 HELIX 37 37 SER D 100 GLY D 106 1 7 HELIX 38 38 SER D 119 PHE D 131 1 13 HELIX 39 39 ASN D 132 ILE D 136 5 5 HELIX 40 40 ARG D 143 TYR D 148 1 6 HELIX 41 41 LYS E 9 ARG E 15 1 7 HELIX 42 42 LEU E 17 LYS E 28 1 12 HELIX 43 43 PRO E 41 TYR E 49 1 9 HELIX 44 44 GLY E 50 GLN E 53 5 4 HELIX 45 45 PHE E 57 THR E 66 1 10 HELIX 46 46 ASP E 79 GLY E 89 1 11 HELIX 47 47 SER E 100 GLY E 106 1 7 HELIX 48 48 SER E 119 PHE E 131 1 13 HELIX 49 49 ASN E 132 ILE E 136 5 5 HELIX 50 50 ARG E 143 TYR E 148 1 6 HELIX 51 51 LYS F 9 ARG F 15 1 7 HELIX 52 52 LEU F 17 LYS F 28 1 12 HELIX 53 53 PRO F 41 TYR F 49 1 9 HELIX 54 54 GLY F 50 GLN F 53 5 4 HELIX 55 55 PHE F 57 THR F 66 1 10 HELIX 56 56 ASP F 79 GLY F 89 1 11 HELIX 57 57 SER F 100 GLY F 106 1 7 HELIX 58 58 SER F 119 PHE F 131 1 13 HELIX 59 59 ASN F 132 ILE F 136 5 5 HELIX 60 60 ARG F 143 TYR F 148 1 6 SHEET 1 A 4 LYS A 31 MET A 38 0 SHEET 2 A 4 VAL A 70 GLU A 76 -1 O GLU A 76 N LYS A 31 SHEET 3 A 4 ARG A 3 ILE A 8 -1 N LEU A 6 O MET A 73 SHEET 4 A 4 ILE A 114 GLY A 116 -1 O HIS A 115 N MET A 7 SHEET 1 B 4 LYS B 31 MET B 38 0 SHEET 2 B 4 VAL B 70 GLU B 76 -1 O VAL B 74 N VAL B 33 SHEET 3 B 4 ARG B 3 ILE B 8 -1 N THR B 4 O VAL B 75 SHEET 4 B 4 ILE B 114 GLY B 116 -1 O HIS B 115 N MET B 7 SHEET 1 C 4 LYS C 31 MET C 38 0 SHEET 2 C 4 VAL C 70 GLU C 76 -1 O VAL C 70 N MET C 38 SHEET 3 C 4 ARG C 3 ILE C 8 -1 N LEU C 6 O MET C 73 SHEET 4 C 4 ILE C 114 GLY C 116 -1 O HIS C 115 N MET C 7 SHEET 1 D 4 LYS D 31 MET D 38 0 SHEET 2 D 4 VAL D 70 GLU D 76 -1 O GLU D 76 N LYS D 31 SHEET 3 D 4 ARG D 3 ILE D 8 -1 N LEU D 6 O MET D 73 SHEET 4 D 4 ILE D 114 GLY D 116 -1 O HIS D 115 N MET D 7 SHEET 1 E 4 LYS E 31 MET E 38 0 SHEET 2 E 4 VAL E 70 GLU E 76 -1 O GLU E 76 N LYS E 31 SHEET 3 E 4 ARG E 3 ILE E 8 -1 N ILE E 8 O PHE E 71 SHEET 4 E 4 ILE E 114 GLY E 116 -1 O HIS E 115 N MET E 7 SHEET 1 F 4 LYS F 31 MET F 38 0 SHEET 2 F 4 VAL F 70 GLU F 76 -1 O GLU F 76 N LYS F 31 SHEET 3 F 4 ARG F 3 ILE F 8 -1 N ILE F 8 O PHE F 71 SHEET 4 F 4 ILE F 114 GLY F 116 -1 O HIS F 115 N MET F 7 LINK O2A ADP A 158 MG MG A 159 1555 1555 2.14 LINK O1B ADP A 158 MG MG A 159 1555 1555 2.77 LINK MG MG A 159 O HOH A 161 1555 1555 1.72 LINK MG MG A 159 O HOH A 162 1555 1555 2.01 LINK MG MG A 159 O HOH A 166 1555 1555 2.85 LINK OD1 ASP B 118 MG MG B 159 1555 1555 2.46 LINK O2A ADP B 158 MG MG B 159 1555 1555 2.17 LINK O3B ADP B 158 MG MG B 159 1555 1555 2.30 LINK MG MG B 159 O HOH B 160 1555 1555 2.41 LINK MG MG B 159 O HOH B 165 1555 1555 2.38 LINK MG MG B 159 O HOH B 426 1555 1555 2.59 LINK O2A ADP D 158 MG MG D 159 1555 1555 2.19 LINK O3B ADP D 158 MG MG D 159 1555 1555 2.74 LINK MG MG D 159 O HOH D 160 1555 1555 1.83 LINK MG MG D 159 O HOH D 161 1555 1555 2.15 LINK OD1 ASP E 118 MG MG E 159 1555 1555 2.71 LINK O2A ADP E 158 MG MG E 159 1555 1555 2.02 LINK O3B ADP E 158 MG MG E 159 1555 1555 2.62 LINK MG MG E 159 O HOH E 165 1555 1555 2.06 LINK MG MG E 159 O HOH E 169 1555 1555 1.87 LINK MG MG E 159 O HOH E 170 1555 1555 2.44 LINK OD1 ASP F 118 MG MG F 159 1555 1555 2.93 LINK O2A ADP F 158 MG MG F 159 1555 1555 2.23 LINK MG MG F 159 O HOH F 428 1555 1555 2.45 LINK MG MG F 159 O HOH F 429 1555 1555 2.72 SITE 1 AC1 17 LYS A 9 HIS A 52 PHE A 57 LEU A 61 SITE 2 AC1 17 THR A 91 ARG A 102 VAL A 109 GLY A 110 SITE 3 AC1 17 ASN A 112 MG A 159 HOH A 160 HOH A 161 SITE 4 AC1 17 HOH A 162 HOH A 166 HOH A 204 HOH A 253 SITE 5 AC1 17 HOH A 295 SITE 1 AC2 5 ASP A 118 ADP A 158 HOH A 161 HOH A 162 SITE 2 AC2 5 HOH A 166 SITE 1 AC3 20 LYS B 9 HIS B 52 PHE B 57 THR B 91 SITE 2 AC3 20 ARG B 102 VAL B 109 ASN B 112 MG B 159 SITE 3 AC3 20 HOH B 160 HOH B 164 HOH B 165 HOH B 179 SITE 4 AC3 20 HOH B 189 HOH B 194 HOH B 215 HOH B 411 SITE 5 AC3 20 HOH B 426 GLY E 54 HOH E 363 HOH E 364 SITE 1 AC4 7 ASP B 118 ADP B 158 HOH B 160 HOH B 165 SITE 2 AC4 7 HOH B 426 GLY E 54 HOH E 363 SITE 1 AC5 14 LYS C 9 HIS C 52 PHE C 57 THR C 91 SITE 2 AC5 14 ARG C 102 VAL C 109 GLY C 110 ASN C 112 SITE 3 AC5 14 HOH C 159 HOH C 160 HOH C 162 HOH C 163 SITE 4 AC5 14 HOH C 172 HOH C 227 SITE 1 AC6 13 LYS D 9 HIS D 52 PHE D 57 LEU D 61 SITE 2 AC6 13 THR D 91 ARG D 102 VAL D 109 GLY D 110 SITE 3 AC6 13 ASN D 112 MG D 159 HOH D 161 HOH D 162 SITE 4 AC6 13 HOH D 174 SITE 1 AC7 4 ASP D 118 ADP D 158 HOH D 160 HOH D 161 SITE 1 AC8 20 GLU A 149 LYS E 9 HIS E 52 PHE E 57 SITE 2 AC8 20 THR E 91 ARG E 102 VAL E 109 ASN E 112 SITE 3 AC8 20 MG E 159 HOH E 160 HOH E 165 HOH E 166 SITE 4 AC8 20 HOH E 168 HOH E 169 HOH E 170 HOH E 173 SITE 5 AC8 20 HOH E 174 HOH E 207 HOH E 249 HOH E 291 SITE 1 AC9 5 ASP E 118 ADP E 158 HOH E 165 HOH E 169 SITE 2 AC9 5 HOH E 170 SITE 1 BC1 12 LYS F 9 HIS F 52 PHE F 57 LEU F 61 SITE 2 BC1 12 THR F 91 ARG F 102 VAL F 109 ASN F 112 SITE 3 BC1 12 MG F 159 HOH F 427 HOH F 428 HOH F 429 SITE 1 BC2 5 GLU F 51 ASP F 118 ADP F 158 HOH F 428 SITE 2 BC2 5 HOH F 429 CRYST1 68.270 103.065 127.000 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007874 0.00000