HEADER CELL CYCLE, HYDROLASE 08-JAN-11 3Q9L TITLE THE STRUCTURE OF THE DIMERIC E.COLI MIND-ATP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEPTUM SITE-DETERMINING PROTEIN MIND; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-260; COMPND 5 SYNONYM: CELL DIVISION INHIBITOR MIND; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MIND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPASE, BACTERIAL CELL DIVISION INHIBITOR, MINC, MINE, CELL CYCLE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WU,K.-T.PARK,J.LUTKENHAUS,T.HOLYOAK REVDAT 4 21-FEB-24 3Q9L 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3Q9L 1 REMARK REVDAT 2 23-MAR-11 3Q9L 1 JRNL REVDAT 1 26-JAN-11 3Q9L 0 JRNL AUTH W.WU,K.T.PARK,T.HOLYOAK,J.LUTKENHAUS JRNL TITL DETERMINATION OF THE STRUCTURE OF THE MIND-ATP COMPLEX JRNL TITL 2 REVEALS THE ORIENTATION OF MIND ON THE MEMBRANE AND THE JRNL TITL 3 RELATIVE LOCATION OF THE BINDING SITES FOR MINE AND MINC. JRNL REF MOL.MICROBIOL. V. 79 1515 2011 JRNL REFN ISSN 0950-382X JRNL PMID 21231967 JRNL DOI 10.1111/J.1365-2958.2010.07536.X REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 33082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0339 - 5.0401 0.97 3396 149 0.2936 0.2861 REMARK 3 2 5.0401 - 4.0038 1.00 3321 164 0.2278 0.2894 REMARK 3 3 4.0038 - 3.4987 0.99 3268 166 0.2295 0.2675 REMARK 3 4 3.4987 - 3.1792 0.98 3206 182 0.2518 0.2864 REMARK 3 5 3.1792 - 2.9516 0.96 3114 170 0.2527 0.2775 REMARK 3 6 2.9516 - 2.7777 0.95 3060 175 0.2801 0.3522 REMARK 3 7 2.7777 - 2.6387 0.93 3013 159 0.2910 0.3514 REMARK 3 8 2.6387 - 2.5239 0.94 3046 157 0.3022 0.3258 REMARK 3 9 2.5239 - 2.4268 0.95 3047 178 0.3281 0.4038 REMARK 3 10 2.4268 - 2.3431 0.92 2943 168 0.3533 0.4329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 42.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22230 REMARK 3 B22 (A**2) : 1.14020 REMARK 3 B33 (A**2) : -0.91790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4048 REMARK 3 ANGLE : 1.354 5483 REMARK 3 CHIRALITY : 0.076 650 REMARK 3 PLANARITY : 0.004 705 REMARK 3 DIHEDRAL : 16.632 1549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:257 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 2:257 ) REMARK 3 ATOM PAIRS NUMBER : 1959 REMARK 3 RMSD : 0.063 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184,0.9788,0.9794 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR 325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.343 REMARK 200 RESOLUTION RANGE LOW (A) : 29.032 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.83200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.35700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.29750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.35700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.83200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.29750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 259 REMARK 465 LYS A 260 REMARK 465 MET B 1 REMARK 465 GLU B 259 REMARK 465 LYS B 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 92 CG ARG A 92 CD -0.157 REMARK 500 ARG B 92 CG ARG B 92 CD -0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -27.94 -174.42 REMARK 500 LEU A 43 67.34 -115.68 REMARK 500 ASN A 45 -27.09 -146.56 REMARK 500 ASP A 93 106.51 173.76 REMARK 500 GLU A 126 -169.43 -78.12 REMARK 500 SER A 162 -28.09 -145.25 REMARK 500 ARG A 204 44.36 76.75 REMARK 500 PHE A 255 18.39 53.17 REMARK 500 SER B 9 -28.92 -172.39 REMARK 500 LEU B 43 66.56 -110.42 REMARK 500 ASN B 45 -29.65 -148.89 REMARK 500 ASP B 93 107.06 176.26 REMARK 500 SER B 162 -26.83 -144.66 REMARK 500 ARG B 204 41.76 78.32 REMARK 500 PHE B 255 16.69 52.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 HOH A 261 O 84.3 REMARK 620 3 HOH A 262 O 94.6 92.3 REMARK 620 4 HOH A 263 O 77.2 86.5 171.7 REMARK 620 5 ATP A 800 O1G 160.2 108.3 99.9 88.3 REMARK 620 6 ATP A 800 O1B 84.5 168.7 90.5 89.2 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 HOH B 261 O 93.2 REMARK 620 3 HOH B 262 O 87.7 93.2 REMARK 620 4 HOH B 263 O 75.9 164.5 97.1 REMARK 620 5 ATP B 800 O1G 155.3 98.5 113.1 87.9 REMARK 620 6 ATP B 800 O1B 81.0 82.4 167.6 85.0 79.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 800 DBREF 3Q9L A 1 260 UNP P0AEZ3 MIND_ECOLI 1 260 DBREF 3Q9L B 1 260 UNP P0AEZ3 MIND_ECOLI 1 260 SEQADV 3Q9L ALA A 40 UNP P0AEZ3 ASP 40 ENGINEERED MUTATION SEQADV 3Q9L ALA B 40 UNP P0AEZ3 ASP 40 ENGINEERED MUTATION SEQRES 1 A 260 MET ALA ARG ILE ILE VAL VAL THR SER GLY LYS GLY GLY SEQRES 2 A 260 VAL GLY LYS THR THR SER SER ALA ALA ILE ALA THR GLY SEQRES 3 A 260 LEU ALA GLN LYS GLY LYS LYS THR VAL VAL ILE ASP PHE SEQRES 4 A 260 ALA ILE GLY LEU ARG ASN LEU ASP LEU ILE MET GLY CYS SEQRES 5 A 260 GLU ARG ARG VAL VAL TYR ASP PHE VAL ASN VAL ILE GLN SEQRES 6 A 260 GLY ASP ALA THR LEU ASN GLN ALA LEU ILE LYS ASP LYS SEQRES 7 A 260 ARG THR GLU ASN LEU TYR ILE LEU PRO ALA SER GLN THR SEQRES 8 A 260 ARG ASP LYS ASP ALA LEU THR ARG GLU GLY VAL ALA LYS SEQRES 9 A 260 VAL LEU ASP ASP LEU LYS ALA MET ASP PHE GLU PHE ILE SEQRES 10 A 260 VAL CYS ASP SER PRO ALA GLY ILE GLU THR GLY ALA LEU SEQRES 11 A 260 MET ALA LEU TYR PHE ALA ASP GLU ALA ILE ILE THR THR SEQRES 12 A 260 ASN PRO GLU VAL SER SER VAL ARG ASP SER ASP ARG ILE SEQRES 13 A 260 LEU GLY ILE LEU ALA SER LYS SER ARG ARG ALA GLU ASN SEQRES 14 A 260 GLY GLU GLU PRO ILE LYS GLU HIS LEU LEU LEU THR ARG SEQRES 15 A 260 TYR ASN PRO GLY ARG VAL SER ARG GLY ASP MET LEU SER SEQRES 16 A 260 MET GLU ASP VAL LEU GLU ILE LEU ARG ILE LYS LEU VAL SEQRES 17 A 260 GLY VAL ILE PRO GLU ASP GLN SER VAL LEU ARG ALA SER SEQRES 18 A 260 ASN GLN GLY GLU PRO VAL ILE LEU ASP ILE ASN ALA ASP SEQRES 19 A 260 ALA GLY LYS ALA TYR ALA ASP THR VAL GLU ARG LEU LEU SEQRES 20 A 260 GLY GLU GLU ARG PRO PHE ARG PHE ILE GLU GLU GLU LYS SEQRES 1 B 260 MET ALA ARG ILE ILE VAL VAL THR SER GLY LYS GLY GLY SEQRES 2 B 260 VAL GLY LYS THR THR SER SER ALA ALA ILE ALA THR GLY SEQRES 3 B 260 LEU ALA GLN LYS GLY LYS LYS THR VAL VAL ILE ASP PHE SEQRES 4 B 260 ALA ILE GLY LEU ARG ASN LEU ASP LEU ILE MET GLY CYS SEQRES 5 B 260 GLU ARG ARG VAL VAL TYR ASP PHE VAL ASN VAL ILE GLN SEQRES 6 B 260 GLY ASP ALA THR LEU ASN GLN ALA LEU ILE LYS ASP LYS SEQRES 7 B 260 ARG THR GLU ASN LEU TYR ILE LEU PRO ALA SER GLN THR SEQRES 8 B 260 ARG ASP LYS ASP ALA LEU THR ARG GLU GLY VAL ALA LYS SEQRES 9 B 260 VAL LEU ASP ASP LEU LYS ALA MET ASP PHE GLU PHE ILE SEQRES 10 B 260 VAL CYS ASP SER PRO ALA GLY ILE GLU THR GLY ALA LEU SEQRES 11 B 260 MET ALA LEU TYR PHE ALA ASP GLU ALA ILE ILE THR THR SEQRES 12 B 260 ASN PRO GLU VAL SER SER VAL ARG ASP SER ASP ARG ILE SEQRES 13 B 260 LEU GLY ILE LEU ALA SER LYS SER ARG ARG ALA GLU ASN SEQRES 14 B 260 GLY GLU GLU PRO ILE LYS GLU HIS LEU LEU LEU THR ARG SEQRES 15 B 260 TYR ASN PRO GLY ARG VAL SER ARG GLY ASP MET LEU SER SEQRES 16 B 260 MET GLU ASP VAL LEU GLU ILE LEU ARG ILE LYS LEU VAL SEQRES 17 B 260 GLY VAL ILE PRO GLU ASP GLN SER VAL LEU ARG ALA SER SEQRES 18 B 260 ASN GLN GLY GLU PRO VAL ILE LEU ASP ILE ASN ALA ASP SEQRES 19 B 260 ALA GLY LYS ALA TYR ALA ASP THR VAL GLU ARG LEU LEU SEQRES 20 B 260 GLY GLU GLU ARG PRO PHE ARG PHE ILE GLU GLU GLU LYS HET MG A 700 1 HET ATP A 800 31 HET MG B 700 1 HET ATP B 800 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 HOH *240(H2 O) HELIX 1 1 GLY A 15 LYS A 30 1 16 HELIX 2 2 ASN A 45 MET A 50 1 6 HELIX 3 3 CYS A 52 VAL A 56 5 5 HELIX 4 4 ASP A 59 GLN A 65 1 7 HELIX 5 5 THR A 69 LEU A 74 1 6 HELIX 6 6 THR A 98 MET A 112 1 15 HELIX 7 7 GLU A 126 PHE A 135 1 10 HELIX 8 8 GLU A 146 ALA A 161 1 16 HELIX 9 9 SER A 164 ASN A 169 1 6 HELIX 10 10 ASN A 184 ARG A 190 1 7 HELIX 11 11 SER A 195 ARG A 204 1 10 HELIX 12 12 GLN A 215 GLY A 224 1 10 HELIX 13 13 PRO A 226 ASP A 230 5 5 HELIX 14 14 ALA A 233 LEU A 247 1 15 HELIX 15 15 GLY B 15 LYS B 30 1 16 HELIX 16 16 ASN B 45 MET B 50 1 6 HELIX 17 17 CYS B 52 VAL B 56 5 5 HELIX 18 18 ASP B 59 GLN B 65 1 7 HELIX 19 19 THR B 69 LEU B 74 1 6 HELIX 20 20 THR B 98 MET B 112 1 15 HELIX 21 21 GLU B 126 PHE B 135 1 10 HELIX 22 22 GLU B 146 ALA B 161 1 16 HELIX 23 23 SER B 164 ASN B 169 1 6 HELIX 24 24 ASN B 184 ARG B 190 1 7 HELIX 25 25 SER B 195 ARG B 204 1 10 HELIX 26 26 GLN B 215 GLY B 224 1 10 HELIX 27 27 PRO B 226 ASP B 230 5 5 HELIX 28 28 ALA B 233 LEU B 247 1 15 SHEET 1 A 8 ILE A 75 LYS A 76 0 SHEET 2 A 8 LEU A 83 LEU A 86 -1 O ILE A 85 N ILE A 75 SHEET 3 A 8 THR A 34 ASP A 38 1 N ASP A 38 O LEU A 86 SHEET 4 A 8 PHE A 116 ASP A 120 1 O VAL A 118 N ILE A 37 SHEET 5 A 8 ARG A 3 THR A 8 1 N VAL A 7 O CYS A 119 SHEET 6 A 8 GLU A 138 THR A 143 1 O ILE A 140 N VAL A 6 SHEET 7 A 8 LYS A 175 TYR A 183 1 O HIS A 177 N ILE A 141 SHEET 8 A 8 LYS A 206 PRO A 212 1 O ILE A 211 N LEU A 180 SHEET 1 B 8 ILE B 75 LYS B 76 0 SHEET 2 B 8 LEU B 83 LEU B 86 -1 O ILE B 85 N ILE B 75 SHEET 3 B 8 THR B 34 ASP B 38 1 N ASP B 38 O LEU B 86 SHEET 4 B 8 PHE B 116 ASP B 120 1 O VAL B 118 N ILE B 37 SHEET 5 B 8 ARG B 3 THR B 8 1 N VAL B 7 O CYS B 119 SHEET 6 B 8 GLU B 138 THR B 143 1 O ILE B 140 N VAL B 6 SHEET 7 B 8 LYS B 175 TYR B 183 1 O HIS B 177 N ILE B 141 SHEET 8 B 8 LYS B 206 PRO B 212 1 O ILE B 211 N LEU B 180 LINK OG1 THR A 17 MG MG A 700 1555 1555 2.27 LINK O HOH A 261 MG MG A 700 1555 1555 2.22 LINK O HOH A 262 MG MG A 700 1555 1555 2.31 LINK O HOH A 263 MG MG A 700 1555 1555 2.18 LINK MG MG A 700 O1G ATP A 800 1555 1555 2.17 LINK MG MG A 700 O1B ATP A 800 1555 1555 2.28 LINK OG1 THR B 17 MG MG B 700 1555 1555 2.29 LINK O HOH B 261 MG MG B 700 1555 1555 2.33 LINK O HOH B 262 MG MG B 700 1555 1555 2.30 LINK O HOH B 263 MG MG B 700 1555 1555 2.16 LINK MG MG B 700 O1G ATP B 800 1555 1555 2.20 LINK MG MG B 700 O1B ATP B 800 1555 1555 2.32 CISPEP 1 ILE B 41 GLY B 42 0 -28.35 SITE 1 AC1 5 THR A 17 HOH A 261 HOH A 262 HOH A 263 SITE 2 AC1 5 ATP A 800 SITE 1 AC2 22 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC2 22 LYS A 16 THR A 17 THR A 18 ALA A 123 SITE 3 AC2 22 ARG A 182 PRO A 212 GLU A 213 ASP A 214 SITE 4 AC2 22 VAL A 217 HOH A 262 HOH A 263 HOH A 293 SITE 5 AC2 22 HOH A 305 HOH A 310 MG A 700 LYS B 11 SITE 6 AC2 22 GLY B 12 GLU B 146 SITE 1 AC3 5 THR B 17 HOH B 261 HOH B 262 HOH B 263 SITE 2 AC3 5 ATP B 800 SITE 1 AC4 23 LYS A 11 GLY A 12 GLU A 146 GLY B 12 SITE 2 AC4 23 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 3 AC4 23 THR B 17 THR B 18 ALA B 123 ARG B 182 SITE 4 AC4 23 ILE B 211 PRO B 212 GLU B 213 ASP B 214 SITE 5 AC4 23 VAL B 217 HOH B 261 HOH B 263 HOH B 287 SITE 6 AC4 23 HOH B 301 HOH B 312 MG B 700 CRYST1 83.664 86.595 110.714 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009032 0.00000