HEADER TRANSFERASE 14-JAN-11 3QBW TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA 1,6-ANHYDRO-N- TITLE 2 ACTETYLMURAMIC ACID KINASE (ANMK) BOUND TO ADENOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANHYDRO-N-ACETYLMURAMIC ACID KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANHMURNAC KINASE; COMPND 5 EC: 2.7.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: ANMK, PA0666; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACETATE AND SUGAR KINASES, HSP70, ACTIN SUPERFAMILY, KINASE, 1, 6- KEYWDS 2 ANHYDRO-N-ACTETYLMURAMIC ACID BINDING, GLYCOSIDE HYDROLASE, ATP- KEYWDS 3 BINDING, CARBOHYDRATE METABOLISM, PEPTIDOGLYCAN RECYCLING, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.BACIK,D.R.MARTIN,B.L.MARK REVDAT 4 13-SEP-23 3QBW 1 REMARK SEQADV REVDAT 3 20-APR-11 3QBW 1 JRNL REVDAT 2 09-FEB-11 3QBW 1 REMARK REVDAT 1 02-FEB-11 3QBW 0 JRNL AUTH J.P.BACIK,G.E.WHITWORTH,K.A.STUBBS,A.K.YADAV,D.R.MARTIN, JRNL AUTH 2 B.A.BAILEY-ELKIN,D.J.VOCADLO,B.L.MARK JRNL TITL MOLECULAR BASIS OF 1,6-ANHYDRO BOND CLEAVAGE AND PHOSPHORYL JRNL TITL 2 TRANSFER BY PSEUDOMONAS AERUGINOSA JRNL TITL 3 1,6-ANHYDRO-N-ACETYLMURAMIC ACID KINASE. JRNL REF J.BIOL.CHEM. V. 286 12283 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21288904 JRNL DOI 10.1074/JBC.M110.198317 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.95000 REMARK 3 B22 (A**2) : -10.95000 REMARK 3 B33 (A**2) : 21.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5413 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 1.173 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 5.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;36.586 ;23.230 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;14.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;17.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4157 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3486 ; 0.514 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5510 ; 0.969 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 1.531 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1873 ; 2.529 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 602 2 REMARK 3 1 B 2 B 602 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1372 ; 0.040 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1162 ; 0.050 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 1372 ; 0.070 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1162 ; 0.080 ; 2.000 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : 1.000H, 1.000K, L REMARK 3 TWIN FRACTION : 0.547 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : 1.000H+1.000K, -1.000K, -L REMARK 3 TWIN FRACTION : 0.453 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 46.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.2 M (NH4)2SO4, 0.1 M REMARK 280 TRI-SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.41000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.41000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 152 REMARK 465 ASP A 153 REMARK 465 ASP A 154 REMARK 465 ASP A 155 REMARK 465 THR A 156 REMARK 465 SER A 173 REMARK 465 PRO A 174 REMARK 465 GLY A 175 REMARK 465 LYS A 176 REMARK 465 PRO A 177 REMARK 465 VAL A 178 REMARK 465 CYS A 284 REMARK 465 GLU A 285 REMARK 465 GLU A 286 REMARK 465 ALA A 363 REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 MET B 1 REMARK 465 ASP B 153 REMARK 465 ASP B 154 REMARK 465 ASP B 155 REMARK 465 ARG B 252 REMARK 465 HIS B 253 REMARK 465 PRO B 254 REMARK 465 ALA B 255 REMARK 465 SER B 365 REMARK 465 HIS B 366 REMARK 465 HIS B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 42 CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 HIS A 216 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 253 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 112 75.90 5.21 REMARK 500 PHE A 181 161.60 176.85 REMARK 500 GLN A 197 -65.64 -95.16 REMARK 500 ASP A 205 6.27 57.84 REMARK 500 GLN A 281 82.30 -158.91 REMARK 500 ASN B 112 78.59 3.23 REMARK 500 LEU B 172 78.41 -106.62 REMARK 500 PHE B 181 162.07 178.32 REMARK 500 GLN B 197 -68.29 -94.69 REMARK 500 ASP B 205 7.19 54.76 REMARK 500 GLN B 281 80.05 -157.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QBX RELATED DB: PDB DBREF 3QBW A 1 363 UNP Q9I5Q5 ANMK_PSEAE 1 363 DBREF 3QBW B 1 363 UNP Q9I5Q5 ANMK_PSEAE 1 363 SEQADV 3QBW GLY A 364 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW SER A 365 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 366 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 367 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 368 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 369 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 370 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS A 371 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW GLY B 364 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW SER B 365 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 366 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 367 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 368 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 369 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 370 UNP Q9I5Q5 EXPRESSION TAG SEQADV 3QBW HIS B 371 UNP Q9I5Q5 EXPRESSION TAG SEQRES 1 A 371 MET PRO ARG TYR LEU GLY LEU MET SER GLY THR SER LEU SEQRES 2 A 371 ASP GLY MET ASP ILE VAL LEU ILE GLU GLN GLY ASP ARG SEQRES 3 A 371 THR THR LEU LEU ALA SER HIS TYR LEU PRO MET PRO ALA SEQRES 4 A 371 GLY LEU ARG GLU ASP ILE LEU ALA LEU CYS VAL PRO GLY SEQRES 5 A 371 PRO ASP GLU ILE ALA ARG ALA ALA GLU VAL GLU GLN ARG SEQRES 6 A 371 TRP VAL ALA LEU ALA ALA GLN GLY VAL ARG GLU LEU LEU SEQRES 7 A 371 LEU GLN GLN GLN MET SER PRO ASP GLU VAL ARG ALA ILE SEQRES 8 A 371 GLY SER HIS GLY GLN THR ILE ARG HIS GLU PRO ALA ARG SEQRES 9 A 371 HIS PHE THR VAL GLN ILE GLY ASN PRO ALA LEU LEU ALA SEQRES 10 A 371 GLU LEU THR GLY ILE ASP VAL VAL ALA ASP PHE ARG ARG SEQRES 11 A 371 ARG ASP VAL ALA ALA GLY GLY GLN GLY ALA PRO LEU VAL SEQRES 12 A 371 PRO ALA PHE HIS GLN ALA LEU PHE GLY ASP ASP ASP THR SEQRES 13 A 371 SER ARG ALA VAL LEU ASN ILE GLY GLY PHE SER ASN VAL SEQRES 14 A 371 SER LEU LEU SER PRO GLY LYS PRO VAL ARG GLY PHE ASP SEQRES 15 A 371 CYS GLY PRO GLY ASN VAL LEU MET ASP ALA TRP ILE HIS SEQRES 16 A 371 HIS GLN ARG GLY GLU HIS PHE ASP ARG ASP GLY ALA TRP SEQRES 17 A 371 ALA ALA SER GLY GLN VAL ASN HIS ALA LEU LEU ALA SER SEQRES 18 A 371 LEU LEU ALA ASP GLU PHE PHE ALA ALA ARG GLY PRO LYS SEQRES 19 A 371 SER THR GLY ARG GLU ARG PHE ASN LEU PRO TRP LEU GLN SEQRES 20 A 371 GLU HIS LEU ALA ARG HIS PRO ALA LEU PRO ALA ALA ASP SEQRES 21 A 371 ILE GLN ALA THR LEU LEU GLU LEU SER ALA ARG SER ILE SEQRES 22 A 371 SER GLU SER LEU LEU ASP ALA GLN PRO ASP CYS GLU GLU SEQRES 23 A 371 VAL LEU VAL CYS GLY GLY GLY ALA PHE ASN THR ALA LEU SEQRES 24 A 371 MET LYS ARG LEU ALA MET LEU MET PRO GLU ALA ARG VAL SEQRES 25 A 371 ALA SER THR ASP GLU TYR GLY ILE PRO PRO ALA TRP MET SEQRES 26 A 371 GLU GLY MET ALA PHE ALA TRP LEU ALA HIS ARG PHE LEU SEQRES 27 A 371 GLU ARG LEU PRO GLY ASN CYS PRO ASP VAL THR GLY ALA SEQRES 28 A 371 LEU GLY PRO ARG THR LEU GLY ALA LEU TYR PRO ALA GLY SEQRES 29 A 371 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 371 MET PRO ARG TYR LEU GLY LEU MET SER GLY THR SER LEU SEQRES 2 B 371 ASP GLY MET ASP ILE VAL LEU ILE GLU GLN GLY ASP ARG SEQRES 3 B 371 THR THR LEU LEU ALA SER HIS TYR LEU PRO MET PRO ALA SEQRES 4 B 371 GLY LEU ARG GLU ASP ILE LEU ALA LEU CYS VAL PRO GLY SEQRES 5 B 371 PRO ASP GLU ILE ALA ARG ALA ALA GLU VAL GLU GLN ARG SEQRES 6 B 371 TRP VAL ALA LEU ALA ALA GLN GLY VAL ARG GLU LEU LEU SEQRES 7 B 371 LEU GLN GLN GLN MET SER PRO ASP GLU VAL ARG ALA ILE SEQRES 8 B 371 GLY SER HIS GLY GLN THR ILE ARG HIS GLU PRO ALA ARG SEQRES 9 B 371 HIS PHE THR VAL GLN ILE GLY ASN PRO ALA LEU LEU ALA SEQRES 10 B 371 GLU LEU THR GLY ILE ASP VAL VAL ALA ASP PHE ARG ARG SEQRES 11 B 371 ARG ASP VAL ALA ALA GLY GLY GLN GLY ALA PRO LEU VAL SEQRES 12 B 371 PRO ALA PHE HIS GLN ALA LEU PHE GLY ASP ASP ASP THR SEQRES 13 B 371 SER ARG ALA VAL LEU ASN ILE GLY GLY PHE SER ASN VAL SEQRES 14 B 371 SER LEU LEU SER PRO GLY LYS PRO VAL ARG GLY PHE ASP SEQRES 15 B 371 CYS GLY PRO GLY ASN VAL LEU MET ASP ALA TRP ILE HIS SEQRES 16 B 371 HIS GLN ARG GLY GLU HIS PHE ASP ARG ASP GLY ALA TRP SEQRES 17 B 371 ALA ALA SER GLY GLN VAL ASN HIS ALA LEU LEU ALA SER SEQRES 18 B 371 LEU LEU ALA ASP GLU PHE PHE ALA ALA ARG GLY PRO LYS SEQRES 19 B 371 SER THR GLY ARG GLU ARG PHE ASN LEU PRO TRP LEU GLN SEQRES 20 B 371 GLU HIS LEU ALA ARG HIS PRO ALA LEU PRO ALA ALA ASP SEQRES 21 B 371 ILE GLN ALA THR LEU LEU GLU LEU SER ALA ARG SER ILE SEQRES 22 B 371 SER GLU SER LEU LEU ASP ALA GLN PRO ASP CYS GLU GLU SEQRES 23 B 371 VAL LEU VAL CYS GLY GLY GLY ALA PHE ASN THR ALA LEU SEQRES 24 B 371 MET LYS ARG LEU ALA MET LEU MET PRO GLU ALA ARG VAL SEQRES 25 B 371 ALA SER THR ASP GLU TYR GLY ILE PRO PRO ALA TRP MET SEQRES 26 B 371 GLU GLY MET ALA PHE ALA TRP LEU ALA HIS ARG PHE LEU SEQRES 27 B 371 GLU ARG LEU PRO GLY ASN CYS PRO ASP VAL THR GLY ALA SEQRES 28 B 371 LEU GLY PRO ARG THR LEU GLY ALA LEU TYR PRO ALA GLY SEQRES 29 B 371 SER HIS HIS HIS HIS HIS HIS HET ADP A 601 27 HET SO4 A 372 5 HET ADP B 602 27 HET SO4 B 372 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *139(H2 O) HELIX 1 1 ALA A 39 CYS A 49 1 11 HELIX 2 2 GLU A 55 GLN A 80 1 26 HELIX 3 3 PRO A 85 GLU A 87 5 3 HELIX 4 4 PRO A 113 THR A 120 1 8 HELIX 5 5 ARG A 130 ALA A 134 1 5 HELIX 6 6 PRO A 144 PHE A 151 1 8 HELIX 7 7 VAL A 188 GLN A 197 1 10 HELIX 8 9 HIS A 216 LEU A 223 1 8 HELIX 9 10 GLU A 226 ALA A 229 1 4 HELIX 10 11 LEU A 243 HIS A 249 1 7 HELIX 11 12 ALA A 258 ALA A 280 1 23 HELIX 12 13 GLY A 292 PHE A 295 5 4 HELIX 13 14 THR A 297 LEU A 306 1 10 HELIX 14 15 THR A 315 TYR A 318 5 4 HELIX 15 16 MET A 325 LEU A 338 1 14 HELIX 16 17 PRO A 346 THR A 349 1 4 HELIX 17 18 ALA B 39 LEU B 48 1 10 HELIX 18 19 GLU B 55 GLN B 80 1 26 HELIX 19 20 PRO B 85 GLU B 87 5 3 HELIX 20 21 PRO B 113 THR B 120 1 8 HELIX 21 22 ARG B 130 ALA B 134 1 5 HELIX 22 23 PRO B 144 PHE B 151 1 8 HELIX 23 24 VAL B 188 ARG B 198 1 11 HELIX 24 26 HIS B 216 LEU B 223 1 8 HELIX 25 27 GLU B 226 ALA B 229 1 4 HELIX 26 28 LEU B 243 LEU B 250 1 8 HELIX 27 29 ALA B 258 ALA B 280 1 23 HELIX 28 30 GLY B 292 PHE B 295 5 4 HELIX 29 31 THR B 297 LEU B 306 1 10 HELIX 30 32 THR B 315 TYR B 318 5 4 HELIX 31 33 PRO B 322 LEU B 338 5 17 HELIX 32 34 PRO B 346 THR B 349 1 4 SHEET 1 A 6 ALA A 359 TYR A 361 0 SHEET 2 A 6 VAL A 124 ALA A 126 -1 N ALA A 126 O ALA A 359 SHEET 3 A 6 ALA A 90 SER A 93 1 N ILE A 91 O VAL A 125 SHEET 4 A 6 ARG A 3 SER A 9 1 N LEU A 5 O ALA A 90 SHEET 5 A 6 GLY A 15 GLN A 23 -1 N ILE A 21 O TYR A 4 SHEET 6 A 6 THR A 27 PRO A 36 -1 N LEU A 35 O MET A 16 SHEET 1 B 5 ARG A 311 SER A 314 0 SHEET 2 B 5 VAL A 287 CYS A 290 1 N VAL A 287 O ARG A 311 SHEET 3 B 5 ARG A 158 ILE A 163 1 SHEET 4 B 5 PHE A 166 LEU A 171 -1 N LEU A 171 O ALA A 159 SHEET 5 B 5 ARG A 179 PRO A 185 -1 N GLY A 184 O SER A 167 SHEET 1 C 2 GLN A 96 GLU A 101 0 SHEET 2 C 2 PHE A 106 ILE A 110 -1 N ILE A 110 O GLN A 96 SHEET 1 D 6 ALA B 359 TYR B 361 0 SHEET 2 D 6 VAL B 124 ALA B 126 -1 N ALA B 126 O ALA B 359 SHEET 3 D 6 ALA B 90 SER B 93 1 N ILE B 91 O VAL B 125 SHEET 4 D 6 ARG B 3 SER B 9 1 N LEU B 5 O ALA B 90 SHEET 5 D 6 GLY B 15 GLN B 23 -1 N ILE B 21 O TYR B 4 SHEET 6 D 6 THR B 27 PRO B 36 -1 N LEU B 35 O MET B 16 SHEET 1 E 5 ARG B 311 SER B 314 0 SHEET 2 E 5 GLU B 286 CYS B 290 1 N VAL B 287 O ARG B 311 SHEET 3 E 5 ARG B 158 ILE B 163 1 N ALA B 159 O GLU B 286 SHEET 4 E 5 PHE B 166 LEU B 172 -1 N LEU B 172 O ARG B 158 SHEET 5 E 5 ARG B 179 PRO B 185 -1 N GLY B 184 O SER B 167 SHEET 1 F 2 GLN B 96 GLU B 101 0 SHEET 2 F 2 PHE B 106 ILE B 110 -1 N ILE B 110 O GLN B 96 CISPEP 1 ALA A 140 PRO A 141 0 -11.04 CISPEP 2 ALA B 140 PRO B 141 0 -9.10 SITE 1 AC1 15 GLY A 10 THR A 11 SER A 12 ASP A 14 SITE 2 AC1 15 GLY A 164 GLY A 165 ASN A 187 ASP A 191 SITE 3 AC1 15 PHE A 202 ASP A 203 ARG A 204 ASP A 205 SITE 4 AC1 15 GLY A 291 GLY A 292 HOH A 404 SITE 1 AC2 6 ARG A 129 ALA A 140 PRO A 141 LEU A 142 SITE 2 AC2 6 VAL A 143 GLU A 326 SITE 1 AC3 16 GLY B 10 THR B 11 SER B 12 ASP B 14 SITE 2 AC3 16 GLY B 164 GLY B 165 ASN B 187 ASP B 191 SITE 3 AC3 16 PHE B 202 ASP B 203 ASP B 205 GLY B 291 SITE 4 AC3 16 GLY B 292 PHE B 295 ASN B 296 HOH B 421 SITE 1 AC4 6 ARG B 129 LEU B 142 VAL B 143 ASN B 168 SITE 2 AC4 6 GLU B 326 HOH B 442 CRYST1 90.218 90.218 174.820 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011084 0.006400 0.000000 0.00000 SCALE2 0.000000 0.012799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005720 0.00000