HEADER CELL CYCLE 14-JAN-11 3QBZ TITLE CRYSTAL STRUCTURE OF THE RAD53-RECOGNITION DOMAIN OF SACCHAROMYCES TITLE 2 CEREVISIAE DBF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DDK KINASE REGULATORY SUBUNIT DBF4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 66-221, HBRCT DOMAIN; COMPND 5 SYNONYM: DUMBBELL FORMING PROTEIN 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: D4205, DBF4, DNA52, YD9609.07C, YDR052C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 STAR PRAREPLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FHA DOMAIN, RAD53, REPLICATION CHECKPOINT, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR L.A.MATTHEWS,D.R.JONES,A.A.PRASAD,B.P.DUNCKER,A.GUARNE REVDAT 4 13-SEP-23 3QBZ 1 REMARK SEQADV REVDAT 3 20-FEB-13 3QBZ 1 JRNL REVDAT 2 21-DEC-11 3QBZ 1 JRNL REVDAT 1 07-DEC-11 3QBZ 0 JRNL AUTH L.A.MATTHEWS,D.R.JONES,A.A.PRASAD,B.P.DUNCKER,A.GUARNE JRNL TITL SACCHAROMYCES CEREVISIAE DBF4 HAS UNIQUE FOLD NECESSARY FOR JRNL TITL 2 INTERACTION WITH RAD53 KINASE. JRNL REF J.BIOL.CHEM. V. 287 2378 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22130670 JRNL DOI 10.1074/JBC.M111.233973 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.A.MATTHEWS,A.DUONG,A.A.PRASAD,B.P.DUNCKER,A.GUARNE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF MOTIF N FROM SACCHAROMYCES CEREVISIAE DBF4 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. F65 890 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8272 - 3.3918 1.00 3133 148 0.2121 0.2472 REMARK 3 2 3.3918 - 2.6923 1.00 2928 152 0.2575 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 42.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.76730 REMARK 3 B22 (A**2) : 7.76730 REMARK 3 B33 (A**2) : -15.53450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1074 REMARK 3 ANGLE : 1.034 1449 REMARK 3 CHIRALITY : 0.068 161 REMARK 3 PLANARITY : 0.004 178 REMARK 3 DIHEDRAL : 16.070 412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 98:109 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3364 18.9067 19.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.4678 T22: 0.2152 REMARK 3 T33: 0.3920 T12: -0.1353 REMARK 3 T13: -0.0525 T23: -0.0925 REMARK 3 L TENSOR REMARK 3 L11: 1.9308 L22: 0.8821 REMARK 3 L33: 3.5740 L12: 0.1381 REMARK 3 L13: -0.3684 L23: -1.5007 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.1132 S13: 0.1651 REMARK 3 S21: -1.3666 S22: 0.3953 S23: 0.4425 REMARK 3 S31: 0.8596 S32: 0.0376 S33: -0.1696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 110:132 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5838 -5.6491 20.8475 REMARK 3 T TENSOR REMARK 3 T11: 0.4928 T22: 0.2011 REMARK 3 T33: 0.2101 T12: -0.1595 REMARK 3 T13: -0.0776 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.8316 L22: 0.1219 REMARK 3 L33: 1.1129 L12: -0.2710 REMARK 3 L13: 0.0579 L23: 0.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: -0.0860 S13: -0.2814 REMARK 3 S21: 0.2220 S22: -0.1800 S23: -0.0802 REMARK 3 S31: 0.3033 S32: 0.1132 S33: 0.0643 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 133:138 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6185 -15.9327 -3.8087 REMARK 3 T TENSOR REMARK 3 T11: 0.8395 T22: 0.3363 REMARK 3 T33: 0.3690 T12: 0.1592 REMARK 3 T13: -0.1542 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 5.8636 L22: 4.6720 REMARK 3 L33: 6.3800 L12: -1.7303 REMARK 3 L13: -5.0527 L23: 4.1137 REMARK 3 S TENSOR REMARK 3 S11: -1.6864 S12: 0.2567 S13: 0.9042 REMARK 3 S21: 1.5486 S22: 0.9564 S23: -1.0096 REMARK 3 S31: 1.4584 S32: -0.5129 S33: 0.5822 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 139:149 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7734 -13.7309 1.1740 REMARK 3 T TENSOR REMARK 3 T11: 0.5181 T22: 0.4015 REMARK 3 T33: 0.3961 T12: 0.1176 REMARK 3 T13: 0.0772 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 4.4966 L22: 3.2303 REMARK 3 L33: 5.9320 L12: -1.8555 REMARK 3 L13: 0.6618 L23: 1.2185 REMARK 3 S TENSOR REMARK 3 S11: -0.2415 S12: 0.3853 S13: -0.5756 REMARK 3 S21: 0.4407 S22: -0.2533 S23: -0.1422 REMARK 3 S31: 0.3101 S32: 1.0932 S33: 0.3992 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 150:166 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1499 -13.4297 16.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.5833 T22: 0.4116 REMARK 3 T33: 0.1656 T12: -0.1332 REMARK 3 T13: -0.1323 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.9404 L22: 2.3719 REMARK 3 L33: 0.4289 L12: 0.1215 REMARK 3 L13: -0.6136 L23: -1.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.4071 S13: -0.3660 REMARK 3 S21: -0.0715 S22: 0.0479 S23: -0.5066 REMARK 3 S31: 0.9371 S32: 0.2136 S33: -0.1239 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 167:179 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2030 -11.9279 14.7589 REMARK 3 T TENSOR REMARK 3 T11: 0.4459 T22: 0.0973 REMARK 3 T33: 0.1997 T12: -0.1241 REMARK 3 T13: -0.0330 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 1.9000 L22: 0.1240 REMARK 3 L33: 1.2021 L12: 0.0280 REMARK 3 L13: 0.7768 L23: 0.1346 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: 0.1900 S13: -0.2168 REMARK 3 S21: 0.0321 S22: 0.3388 S23: -0.1422 REMARK 3 S31: -0.1997 S32: 0.6653 S33: -0.0162 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESID 180:189 REMARK 3 ORIGIN FOR THE GROUP (A): -47.7855 -12.4268 10.4345 REMARK 3 T TENSOR REMARK 3 T11: 0.5304 T22: 0.2079 REMARK 3 T33: 0.2724 T12: -0.0839 REMARK 3 T13: 0.0831 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.4370 L22: 7.3273 REMARK 3 L33: 1.9328 L12: 1.6546 REMARK 3 L13: -0.7031 L23: -3.6646 REMARK 3 S TENSOR REMARK 3 S11: 1.0081 S12: -0.1181 S13: 0.1902 REMARK 3 S21: -1.2217 S22: -0.7497 S23: 0.9922 REMARK 3 S31: -0.3165 S32: 0.6820 S33: -0.2781 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESID 190:199 REMARK 3 ORIGIN FOR THE GROUP (A): -43.2594 -11.9509 18.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.0651 REMARK 3 T33: 0.2407 T12: -0.1623 REMARK 3 T13: 0.0229 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.2127 L22: 0.2054 REMARK 3 L33: 0.8870 L12: -0.3401 REMARK 3 L13: 0.1584 L23: -0.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.0008 S13: -0.0368 REMARK 3 S21: 0.6210 S22: -0.1672 S23: 0.2570 REMARK 3 S31: -0.1084 S32: 0.2994 S33: -0.0867 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND RESID 200:213 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8266 -2.5978 11.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.4608 T22: 0.2511 REMARK 3 T33: 0.3119 T12: -0.1452 REMARK 3 T13: -0.0327 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.5759 L22: 1.7480 REMARK 3 L33: 1.2460 L12: 0.0534 REMARK 3 L13: -1.0320 L23: 0.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.2370 S12: -0.0321 S13: 0.4755 REMARK 3 S21: -0.1697 S22: 0.1637 S23: 0.5563 REMARK 3 S31: -0.0683 S32: -0.0843 S33: 0.0623 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND RESID 214:219 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9068 -1.3348 11.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.6811 T22: 0.5084 REMARK 3 T33: 0.2314 T12: -0.1972 REMARK 3 T13: -0.1289 T23: -0.1682 REMARK 3 L TENSOR REMARK 3 L11: 3.2786 L22: 4.6007 REMARK 3 L33: 6.6624 L12: -3.3780 REMARK 3 L13: -2.6818 L23: 1.2019 REMARK 3 S TENSOR REMARK 3 S11: 0.7344 S12: 0.6123 S13: 0.4261 REMARK 3 S21: -1.0235 S22: 0.6263 S23: -0.5858 REMARK 3 S31: 0.4878 S32: 0.7780 S33: -1.3690 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M AMMONIUM SULFATE 50 MM SODIUM REMARK 280 CACODYLATE 15 MM CYMAL-7, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.55633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.11267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.55633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.11267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.55633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.11267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.55633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.11267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.55633 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 62 REMARK 465 SER A 63 REMARK 465 HIS A 64 REMARK 465 MET A 65 REMARK 465 GLN A 66 REMARK 465 GLN A 67 REMARK 465 GLN A 68 REMARK 465 GLN A 69 REMARK 465 HIS A 70 REMARK 465 LEU A 71 REMARK 465 HIS A 72 REMARK 465 GLU A 73 REMARK 465 LYS A 74 REMARK 465 LYS A 75 REMARK 465 ARG A 76 REMARK 465 ALA A 77 REMARK 465 ARG A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 ARG A 81 REMARK 465 ALA A 82 REMARK 465 ARG A 83 REMARK 465 SER A 84 REMARK 465 ILE A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 ALA A 88 REMARK 465 VAL A 89 REMARK 465 GLN A 90 REMARK 465 VAL A 91 REMARK 465 SER A 92 REMARK 465 LYS A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 GLY A 96 REMARK 465 LEU A 97 REMARK 465 LEU A 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OQ0 RELATED DB: PDB REMARK 900 STRUCTURE OF 6XHIS DBF4 FRAGMENT ENCOMPASSING RESIDUES 120-250 REMARK 900 RELATED ID: 3OQ4 RELATED DB: PDB REMARK 900 STRUCTURE OF DBF4 FRAGMENT ENCOMPASSING RESIDUES 120-250 (HIS-TAG REMARK 900 REMOVED) DBREF 3QBZ A 66 221 UNP P32325 DBF4_YEAST 66 221 SEQADV 3QBZ GLY A 62 UNP P32325 EXPRESSION TAG SEQADV 3QBZ SER A 63 UNP P32325 EXPRESSION TAG SEQADV 3QBZ HIS A 64 UNP P32325 EXPRESSION TAG SEQADV 3QBZ MET A 65 UNP P32325 EXPRESSION TAG SEQRES 1 A 160 GLY SER HIS MET GLN GLN GLN GLN HIS LEU HIS GLU LYS SEQRES 2 A 160 LYS ARG ALA ARG ILE GLU ARG ALA ARG SER ILE GLU GLY SEQRES 3 A 160 ALA VAL GLN VAL SER LYS GLY THR GLY LEU LYS ASN VAL SEQRES 4 A 160 GLU PRO ARG VAL THR PRO LYS GLU LEU LEU GLU TRP GLN SEQRES 5 A 160 THR ASN TRP LYS LYS ILE MET LYS ARG ASP SER ARG ILE SEQRES 6 A 160 TYR PHE ASP ILE THR ASP ASP VAL GLU MET ASN THR TYR SEQRES 7 A 160 ASN LYS SER LYS MET ASP LYS ARG ARG ASP LEU LEU LYS SEQRES 8 A 160 ARG GLY PHE LEU THR LEU GLY ALA GLN ILE THR GLN PHE SEQRES 9 A 160 PHE ASP THR THR VAL THR ILE VAL ILE THR ARG ARG SER SEQRES 10 A 160 VAL GLU ASN ILE TYR LEU LEU LYS ASP THR ASP ILE LEU SEQRES 11 A 160 SER ARG ALA LYS LYS ASN TYR MET LYS VAL TRP SER TYR SEQRES 12 A 160 GLU LYS ALA ALA ARG PHE LEU LYS ASN LEU ASP VAL ASP SEQRES 13 A 160 LEU ASP HIS LEU HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *10(H2 O) HELIX 1 1 THR A 105 SER A 124 1 20 HELIX 2 2 ASN A 137 THR A 157 1 21 HELIX 3 3 ASN A 181 LEU A 185 5 5 HELIX 4 4 ASP A 189 ASN A 197 1 9 HELIX 5 5 TYR A 204 ASN A 213 1 10 SHEET 1 A 4 GLN A 161 ILE A 162 0 SHEET 2 A 4 ARG A 125 PHE A 128 1 N ILE A 126 O GLN A 161 SHEET 3 A 4 ILE A 172 THR A 175 1 O ILE A 174 N TYR A 127 SHEET 4 A 4 LYS A 200 SER A 203 1 O TRP A 202 N VAL A 173 SITE 1 AC1 6 THR A 168 LYS A 186 THR A 188 ARG A 193 SITE 2 AC1 6 LYS A 196 ASN A 197 SITE 1 AC2 5 ARG A 103 ASN A 137 THR A 138 LYS A 186 SITE 2 AC2 5 LYS A 196 SITE 1 AC3 5 ASN A 99 VAL A 100 LYS A 195 LYS A 200 SITE 2 AC3 5 LYS A 206 CRYST1 83.740 83.740 103.669 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011942 0.006895 0.000000 0.00000 SCALE2 0.000000 0.013789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009646 0.00000