HEADER SUGAR BINDING PROTEIN 15-JAN-11 3QC5 TITLE GSPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET BINDING PROTEIN GSPB; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 245-604; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GORDONII; SOURCE 3 ORGANISM_TAXID: 1302; SOURCE 4 GENE: GSPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE/SUGAR BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.PYBURN,T.M.IVERSON REVDAT 4 21-FEB-24 3QC5 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3QC5 1 REMARK REVDAT 2 24-AUG-11 3QC5 1 REMARK REVDAT 1 10-AUG-11 3QC5 0 JRNL AUTH T.M.PYBURN,B.A.BENSING,Y.Q.XIONG,B.J.MELANCON,T.M.TOMASIAK, JRNL AUTH 2 N.J.WARD,V.YANKOVSKAYA,K.M.OLIVER,G.CECCHINI,G.A.SULIKOWSKI, JRNL AUTH 3 M.J.TYSKA,P.M.SULLAM,T.M.IVERSON JRNL TITL A STRUCTURAL MODEL FOR BINDING OF THE SERINE-RICH REPEAT JRNL TITL 2 ADHESIN GSPB TO HOST CARBOHYDRATE RECEPTORS. JRNL REF PLOS PATHOG. V. 7 02112 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21765814 JRNL DOI 10.1371/JOURNAL.PPAT.1002112 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 60741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2978 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4108 ; 1.378 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 5.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;37.399 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;10.848 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2273 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1845 ; 1.403 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3063 ; 2.249 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 3.248 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 5.009 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2978 ; 1.435 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 246 X 604 REMARK 3 RESIDUE RANGE : X 246 X 604 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3889 66.9698 36.9592 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0089 REMARK 3 T33: 0.0289 T12: -0.0069 REMARK 3 T13: 0.0015 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0527 L22: 0.0289 REMARK 3 L33: 0.4904 L12: -0.0107 REMARK 3 L13: -0.0233 L23: -0.0983 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0086 S13: -0.0040 REMARK 3 S21: -0.0008 S22: 0.0129 S23: 0.0073 REMARK 3 S31: -0.0365 S32: -0.0249 S33: -0.0170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6 MG/ML GSPB BUFFERED IN 20 MM TRIS, REMARK 280 33% JEFFAMINE ED-2001, 0.1 M HEPES, 0.15 M KCL, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.09600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.37650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.09600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.37650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG X 245 REMARK 465 GLY X 319 REMARK 465 VAL X 320 REMARK 465 TYR X 321 REMARK 465 ASN X 322 REMARK 465 SER X 323 REMARK 465 GLY X 324 REMARK 465 GLY X 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS X 290 -158.24 60.61 REMARK 500 ASN X 370 40.21 -99.65 REMARK 500 ASN X 370 46.74 -104.01 REMARK 500 THR X 381 -96.17 -120.07 REMARK 500 GLN X 538 78.87 -152.84 REMARK 500 ASN X 565 18.62 59.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE BOND DISTANCE BETWEEN N6A AND N6B ATOMS OF THE HDZ LIGAND IS REMARK 600 NOT CONFORM TO THE STANDARD BOND DISTANCE FOR HDZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 1 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 399 OD2 REMARK 620 2 ASP X 399 OD1 52.8 REMARK 620 3 GLU X 401 O 128.6 82.4 REMARK 620 4 ASP X 427 OD1 135.8 165.9 93.7 REMARK 620 5 ASP X 427 OD2 81.5 126.2 149.6 56.0 REMARK 620 6 ASN X 428 OD1 102.6 82.3 93.4 84.4 82.0 REMARK 620 7 ASP X 490 OD2 79.4 100.9 87.0 92.4 96.0 176.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 7 O REMARK 620 2 HOH X 190 O 130.6 REMARK 620 3 PHE X 432 O 70.6 68.1 REMARK 620 4 HOH X 756 O 68.0 106.9 55.0 REMARK 620 5 HOH X 757 O 100.7 117.6 109.3 57.1 REMARK 620 6 HOH X 758 O 116.4 89.9 151.3 153.4 97.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HDZ X 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QC6 RELATED DB: PDB REMARK 900 RELATED ID: 3QD1 RELATED DB: PDB DBREF 3QC5 X 245 604 UNP Q939N5 Q939N5_STRGN 245 604 SEQADV 3QC5 SER X 444 UNP Q939N5 ASN 444 ENGINEERED MUTATION SEQRES 1 X 360 ARG ALA VAL THR GLU SER ALA PRO ASN VAL GLU TYR HIS SEQRES 2 X 360 ASP VAL LYS GLY ASP MET ILE GLN SER VAL THR THR SER SEQRES 3 X 360 PHE ASP ASP THR SER ARG LEU LEU THR TRP THR ILE ASN SEQRES 4 X 360 LEU THR PRO ARG GLN VAL LYS SER ASN LEU GLY ALA LEU SEQRES 5 X 360 VAL SER ILE SER GLY ASN GLN GLU THR ARG THR VAL THR SEQRES 6 X 360 ILE ASN GLY LYS ASN ALA ALA ASN GLY GLY VAL TYR ASN SEQRES 7 X 360 SER GLY GLY ALA TRP ASN LEU TYR THR GLY GLU SER VAL SEQRES 8 X 360 ASN ASN ASN VAL LEU ARG ILE THR THR GLN VAL ASN ASP SEQRES 9 X 360 THR GLY GLY GLU VAL LYS LEU GLY LEU ARG LEU VAL THR SEQRES 10 X 360 SER ASP LYS LYS ILE THR LYS THR ASN LEU PRO LEU GLU SEQRES 11 X 360 PHE SER GLN VAL ALA ALA THR THR ASN GLY SER TRP ASP SEQRES 12 X 360 LYS ALA GLY TYR ASN THR THR ILE VAL GLU LYS ASP THR SEQRES 13 X 360 GLU ARG PRO VAL VAL ASN VAL PRO SER GLU ILE THR VAL SEQRES 14 X 360 TYR ARG GLY GLU SER PHE GLU TYR PHE ALA THR VAL THR SEQRES 15 X 360 ASP ASN SER ASN ALA PHE ASP LEU ALA LYS THR VAL VAL SEQRES 16 X 360 ARG TRP LEU TYR SER ASN GLN PRO GLY ARG GLY THR GLU SEQRES 17 X 360 TRP LEU GLN TYR SER VAL THR GLN VAL GLY ASN GLN LEU SEQRES 18 X 360 LYS VAL ARG ILE PHE GLY ASN VAL PRO ILE ASP THR THR SEQRES 19 X 360 ILE GLY ASP TYR THR ARG TYR VAL VAL ALA THR ASP ALA SEQRES 20 X 360 ALA GLY ASN VAL ASN ALA THR GLN THR GLU MET GLY ASN SEQRES 21 X 360 ALA ALA VAL ASP LYS THR SER VAL ASN GLY GLN PHE LYS SEQRES 22 X 360 LEU ILE ILE ARG PHE ARG ILE LYS THR PRO GLU ASN THR SEQRES 23 X 360 VAL PHE VAL ASN ASN PRO ASN GLN LEU THR GLU VAL GLU SEQRES 24 X 360 LYS ASN LEU VAL ARG GLU ALA VAL LYS LYS SER ASN PRO SEQRES 25 X 360 ASP LEU ARG ALA GLN ASP VAL LEU ASN SER ASN TYR VAL SEQRES 26 X 360 THR GLY ILE THR VAL SER ASN ASN GLY THR THR THR ILE SEQRES 27 X 360 THR TYR ARG ASP GLY ARG LYS ASP ILE ILE ASP GLY SER SEQRES 28 X 360 LYS PHE ILE ASP THR ARG ALA GLY SER HET K X 1 1 HET GOL X 605 6 HET GOL X 606 6 HET GOL X 607 12 HET HDZ X 608 2 HET NA X 609 1 HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETNAM HDZ NITROGEN MOLECULE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 K K 1+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HDZ N2 FORMUL 7 NA NA 1+ FORMUL 8 HOH *385(H2 O) HELIX 1 1 GLU X 374 VAL X 378 5 5 HELIX 2 2 THR X 498 LYS X 509 1 12 HELIX 3 3 THR X 540 ASN X 555 1 16 HELIX 4 4 ARG X 559 SER X 566 5 8 HELIX 5 5 ASN X 567 GLY X 571 1 5 SHEET 1 A 6 VAL X 247 SER X 250 0 SHEET 2 A 6 ILE X 264 ASP X 272 -1 O THR X 269 N SER X 250 SHEET 3 A 6 LEU X 277 LEU X 284 -1 O THR X 281 N THR X 268 SHEET 4 A 6 ASN X 338 VAL X 346 -1 O ASN X 338 N LEU X 284 SHEET 5 A 6 GLN X 303 ILE X 310 -1 N ARG X 306 O THR X 343 SHEET 6 A 6 LYS X 313 ASN X 314 -1 O LYS X 313 N ILE X 310 SHEET 1 B 6 ASN X 253 HIS X 257 0 SHEET 2 B 6 TRP X 386 ILE X 395 -1 O ASN X 392 N ASN X 253 SHEET 3 B 6 GLY X 351 SER X 362 -1 N GLY X 351 O ILE X 395 SHEET 4 B 6 ASN X 292 ILE X 299 -1 N LEU X 296 O ARG X 358 SHEET 5 B 6 ASN X 328 GLU X 333 -1 O TYR X 330 N ALA X 295 SHEET 6 B 6 ALA X 316 ASN X 317 -1 N ALA X 316 O THR X 331 SHEET 1 C 4 VAL X 404 ASN X 406 0 SHEET 2 C 4 SER X 418 THR X 426 -1 O THR X 424 N ASN X 406 SHEET 3 C 4 GLN X 464 ASN X 472 -1 O ILE X 469 N TYR X 421 SHEET 4 C 4 GLN X 455 VAL X 461 -1 N THR X 459 O LYS X 466 SHEET 1 D 4 GLU X 410 TYR X 414 0 SHEET 2 D 4 GLN X 515 ARG X 521 1 O ARG X 521 N VAL X 413 SHEET 3 D 4 GLY X 480 ASP X 490 -1 N TYR X 482 O LEU X 518 SHEET 4 D 4 PHE X 432 ARG X 440 -1 N ASP X 433 O THR X 489 SHEET 1 E 2 VAL X 531 VAL X 533 0 SHEET 2 E 2 ILE X 598 THR X 600 1 O ASP X 599 N VAL X 533 SHEET 1 F 3 ILE X 572 VAL X 574 0 SHEET 2 F 3 THR X 580 THR X 583 -1 O THR X 581 N THR X 573 SHEET 3 F 3 LYS X 589 ILE X 592 -1 O ILE X 592 N THR X 580 LINK K K X 1 OD2 ASP X 399 1555 1555 2.35 LINK K K X 1 OD1 ASP X 399 1555 1555 2.51 LINK K K X 1 O GLU X 401 1555 1555 2.20 LINK K K X 1 OD1 ASP X 427 1555 1555 2.34 LINK K K X 1 OD2 ASP X 427 1555 1555 2.38 LINK K K X 1 OD1 ASN X 428 1555 1555 2.27 LINK K K X 1 OD2 ASP X 490 1555 1555 2.26 LINK O HOH X 7 NA NA X 609 1555 1555 2.91 LINK O HOH X 190 NA NA X 609 1555 1555 2.91 LINK O PHE X 432 NA NA X 609 1555 1555 3.15 LINK NA NA X 609 O HOH X 756 1555 1555 3.03 LINK NA NA X 609 O HOH X 757 1555 1555 2.93 LINK NA NA X 609 O HOH X 758 1555 1555 2.80 SITE 1 AC1 5 ASP X 399 GLU X 401 ASP X 427 ASN X 428 SITE 2 AC1 5 ASP X 490 SITE 1 AC2 7 HOH X 49 ASN X 406 VAL X 407 PRO X 408 SITE 2 AC2 7 THR X 500 ASN X 504 HOH X 639 SITE 1 AC3 5 ASN X 347 ASP X 348 THR X 349 GLN X 561 SITE 2 AC3 5 HOH X 678 SITE 1 AC4 11 HOH X 41 GLU X 401 ARG X 402 VAL X 404 SITE 2 AC4 11 THR X 426 ASP X 427 ASN X 428 ALA X 506 SITE 3 AC4 11 LYS X 509 ALA X 602 HOH X 750 SITE 1 AC5 6 HOH X 61 TRP X 441 ARG X 449 TYR X 482 SITE 2 AC5 6 ARG X 484 HOH X 691 SITE 1 AC6 7 HOH X 7 HOH X 190 PHE X 432 LEU X 434 SITE 2 AC6 7 HOH X 756 HOH X 757 HOH X 758 CRYST1 33.681 96.753 100.192 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009981 0.00000