HEADER CYTOKINE/CYTOKINE RECEPTOR 18-JAN-11 3QD6 TITLE CRYSTAL STRUCTURE OF THE CD40 AND CD154 (CD40L) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD40 LIGAND; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: SECRETED FORM, SOLUBLE FORM; COMPND 5 SYNONYM: CD40-L; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5; COMPND 9 CHAIN: R, S, T, U; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 11 SYNONYM: CD40L RECEPTOR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD154, CD40L; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACGP67A; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CD40; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS IMMUNE REGULATOR, RECEPTOR, CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-O.LEE,Y.J.KIM,D.H.SONG,H.M.KIM,B.S.PARK REVDAT 5 30-OCT-24 3QD6 1 REMARK REVDAT 4 01-NOV-23 3QD6 1 HETSYN REVDAT 3 29-JUL-20 3QD6 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 21-MAR-12 3QD6 1 JRNL VERSN REVDAT 1 02-FEB-11 3QD6 0 JRNL AUTH H.-J.AN,Y.J.KIM,D.H.SONG,B.S.PARK,H.M.KIM,J.D.LEE,S.-G.PAIK, JRNL AUTH 2 J.-O.LEE,H.LEE JRNL TITL CRYSTALLOGRAPHIC AND MUTATIONAL ANALYSIS OF THE CD40-CD154 JRNL TITL 2 COMPLEX AND ITS IMPLICATIONS FOR RECEPTOR ACTIVATION JRNL REF J.BIOL.CHEM. V. 286 11226 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21285457 JRNL DOI 10.1074/JBC.M110.208215 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 114.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3313622.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 24857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3962 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 220 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61000 REMARK 3 B22 (A**2) : -2.61000 REMARK 3 B33 (A**2) : 5.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.55 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 45.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3QD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0050 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24906 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 114.961 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: 1ALY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000, 0.1M MOPS, 10% REMARK 280 ISOPROPANOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.76733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.38367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.57550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.19183 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 175.95917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 113 REMARK 465 ASP A 114 REMARK 465 PRO A 115 REMARK 465 GLY A 116 REMARK 465 ASP A 117 REMARK 465 GLN A 118 REMARK 465 ASN A 180 REMARK 465 ARG A 181 REMARK 465 GLU A 182 REMARK 465 ALA A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 GLN A 186 REMARK 465 ALA A 187 REMARK 465 ALA B 113 REMARK 465 ASP B 114 REMARK 465 PRO B 115 REMARK 465 GLY B 116 REMARK 465 ASP B 117 REMARK 465 GLN B 118 REMARK 465 ASN B 180 REMARK 465 ARG B 181 REMARK 465 GLU B 182 REMARK 465 ALA B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 GLN B 186 REMARK 465 ALA B 187 REMARK 465 ALA C 113 REMARK 465 ASP C 114 REMARK 465 PRO C 115 REMARK 465 GLY C 116 REMARK 465 ASP C 117 REMARK 465 GLN C 118 REMARK 465 ASN C 180 REMARK 465 ARG C 181 REMARK 465 GLU C 182 REMARK 465 ALA C 183 REMARK 465 SER C 184 REMARK 465 SER C 185 REMARK 465 GLN C 186 REMARK 465 ALA C 187 REMARK 465 ALA D 113 REMARK 465 ASP D 114 REMARK 465 PRO D 115 REMARK 465 GLY D 116 REMARK 465 ASP D 117 REMARK 465 GLN D 118 REMARK 465 ASN D 180 REMARK 465 ARG D 181 REMARK 465 GLU D 182 REMARK 465 ALA D 183 REMARK 465 SER D 184 REMARK 465 SER D 185 REMARK 465 GLN D 186 REMARK 465 ALA D 187 REMARK 465 ALA E 113 REMARK 465 ASP E 114 REMARK 465 PRO E 115 REMARK 465 GLY E 116 REMARK 465 ASP E 117 REMARK 465 GLN E 118 REMARK 465 ASN E 180 REMARK 465 ARG E 181 REMARK 465 GLU E 182 REMARK 465 ALA E 183 REMARK 465 SER E 184 REMARK 465 SER E 185 REMARK 465 GLN E 186 REMARK 465 ALA E 187 REMARK 465 ALA F 113 REMARK 465 ASP F 114 REMARK 465 PRO F 115 REMARK 465 GLY F 116 REMARK 465 ASP F 117 REMARK 465 GLN F 118 REMARK 465 ASN F 180 REMARK 465 ARG F 181 REMARK 465 GLU F 182 REMARK 465 ALA F 183 REMARK 465 SER F 184 REMARK 465 SER F 185 REMARK 465 GLN F 186 REMARK 465 ALA F 187 REMARK 465 GLU R 21 REMARK 465 PRO R 22 REMARK 465 PRO R 23 REMARK 465 THR R 24 REMARK 465 ALA R 25 REMARK 465 SER R 126 REMARK 465 PRO R 127 REMARK 465 GLY R 128 REMARK 465 PHE R 129 REMARK 465 GLY R 130 REMARK 465 VAL R 131 REMARK 465 CYS R 146 REMARK 465 PRO R 147 REMARK 465 VAL R 148 REMARK 465 GLY R 149 REMARK 465 PHE R 150 REMARK 465 PHE R 151 REMARK 465 SER R 152 REMARK 465 ASN R 153 REMARK 465 VAL R 154 REMARK 465 SER R 155 REMARK 465 SER R 156 REMARK 465 ALA R 157 REMARK 465 PHE R 158 REMARK 465 GLU R 159 REMARK 465 LYS R 160 REMARK 465 CYS R 161 REMARK 465 HIS R 162 REMARK 465 PRO R 163 REMARK 465 TRP R 164 REMARK 465 THR R 165 REMARK 465 SER R 166 REMARK 465 CYS R 167 REMARK 465 GLU R 168 REMARK 465 THR R 169 REMARK 465 LYS R 170 REMARK 465 ASP R 171 REMARK 465 LEU R 172 REMARK 465 VAL R 173 REMARK 465 VAL R 174 REMARK 465 GLN R 175 REMARK 465 GLN R 176 REMARK 465 ALA R 177 REMARK 465 GLY R 178 REMARK 465 THR R 179 REMARK 465 ASN R 180 REMARK 465 LYS R 181 REMARK 465 THR R 182 REMARK 465 ASP R 183 REMARK 465 VAL R 184 REMARK 465 VAL R 185 REMARK 465 CYS R 186 REMARK 465 GLY R 187 REMARK 465 PRO R 188 REMARK 465 GLN R 189 REMARK 465 ASP R 190 REMARK 465 SER R 191 REMARK 465 GLY R 192 REMARK 465 ARG R 193 REMARK 465 LEU R 194 REMARK 465 VAL R 195 REMARK 465 PRO R 196 REMARK 465 ARG R 197 REMARK 465 SER S 126 REMARK 465 PRO S 127 REMARK 465 GLY S 128 REMARK 465 PHE S 129 REMARK 465 GLY S 130 REMARK 465 VAL S 131 REMARK 465 CYS S 146 REMARK 465 PRO S 147 REMARK 465 VAL S 148 REMARK 465 GLY S 149 REMARK 465 PHE S 150 REMARK 465 PHE S 151 REMARK 465 SER S 152 REMARK 465 ASN S 153 REMARK 465 VAL S 154 REMARK 465 SER S 155 REMARK 465 SER S 156 REMARK 465 ALA S 157 REMARK 465 PHE S 158 REMARK 465 GLU S 159 REMARK 465 LYS S 160 REMARK 465 CYS S 161 REMARK 465 HIS S 162 REMARK 465 PRO S 163 REMARK 465 TRP S 164 REMARK 465 THR S 165 REMARK 465 SER S 166 REMARK 465 CYS S 167 REMARK 465 GLU S 168 REMARK 465 THR S 169 REMARK 465 LYS S 170 REMARK 465 ASP S 171 REMARK 465 LEU S 172 REMARK 465 VAL S 173 REMARK 465 VAL S 174 REMARK 465 GLN S 175 REMARK 465 GLN S 176 REMARK 465 ALA S 177 REMARK 465 GLY S 178 REMARK 465 THR S 179 REMARK 465 ASN S 180 REMARK 465 LYS S 181 REMARK 465 THR S 182 REMARK 465 ASP S 183 REMARK 465 VAL S 184 REMARK 465 VAL S 185 REMARK 465 CYS S 186 REMARK 465 GLY S 187 REMARK 465 PRO S 188 REMARK 465 GLN S 189 REMARK 465 ASP S 190 REMARK 465 SER S 191 REMARK 465 GLY S 192 REMARK 465 ARG S 193 REMARK 465 LEU S 194 REMARK 465 VAL S 195 REMARK 465 PRO S 196 REMARK 465 ARG S 197 REMARK 465 GLU T 21 REMARK 465 PRO T 22 REMARK 465 PRO T 23 REMARK 465 THR T 24 REMARK 465 ALA T 25 REMARK 465 SER T 126 REMARK 465 PRO T 127 REMARK 465 GLY T 128 REMARK 465 PHE T 129 REMARK 465 GLY T 130 REMARK 465 VAL T 131 REMARK 465 CYS T 146 REMARK 465 PRO T 147 REMARK 465 VAL T 148 REMARK 465 GLY T 149 REMARK 465 PHE T 150 REMARK 465 PHE T 151 REMARK 465 SER T 152 REMARK 465 ASN T 153 REMARK 465 VAL T 154 REMARK 465 SER T 155 REMARK 465 SER T 156 REMARK 465 ALA T 157 REMARK 465 PHE T 158 REMARK 465 GLU T 159 REMARK 465 LYS T 160 REMARK 465 CYS T 161 REMARK 465 HIS T 162 REMARK 465 PRO T 163 REMARK 465 TRP T 164 REMARK 465 THR T 165 REMARK 465 SER T 166 REMARK 465 CYS T 167 REMARK 465 GLU T 168 REMARK 465 THR T 169 REMARK 465 LYS T 170 REMARK 465 ASP T 171 REMARK 465 LEU T 172 REMARK 465 VAL T 173 REMARK 465 VAL T 174 REMARK 465 GLN T 175 REMARK 465 GLN T 176 REMARK 465 ALA T 177 REMARK 465 GLY T 178 REMARK 465 THR T 179 REMARK 465 ASN T 180 REMARK 465 LYS T 181 REMARK 465 THR T 182 REMARK 465 ASP T 183 REMARK 465 VAL T 184 REMARK 465 VAL T 185 REMARK 465 CYS T 186 REMARK 465 GLY T 187 REMARK 465 PRO T 188 REMARK 465 GLN T 189 REMARK 465 ASP T 190 REMARK 465 SER T 191 REMARK 465 GLY T 192 REMARK 465 ARG T 193 REMARK 465 LEU T 194 REMARK 465 VAL T 195 REMARK 465 PRO T 196 REMARK 465 ARG T 197 REMARK 465 SER U 126 REMARK 465 PRO U 127 REMARK 465 GLY U 128 REMARK 465 PHE U 129 REMARK 465 GLY U 130 REMARK 465 VAL U 131 REMARK 465 CYS U 146 REMARK 465 PRO U 147 REMARK 465 VAL U 148 REMARK 465 GLY U 149 REMARK 465 PHE U 150 REMARK 465 PHE U 151 REMARK 465 SER U 152 REMARK 465 ASN U 153 REMARK 465 VAL U 154 REMARK 465 SER U 155 REMARK 465 SER U 156 REMARK 465 ALA U 157 REMARK 465 PHE U 158 REMARK 465 GLU U 159 REMARK 465 LYS U 160 REMARK 465 CYS U 161 REMARK 465 HIS U 162 REMARK 465 PRO U 163 REMARK 465 TRP U 164 REMARK 465 THR U 165 REMARK 465 SER U 166 REMARK 465 CYS U 167 REMARK 465 GLU U 168 REMARK 465 THR U 169 REMARK 465 LYS U 170 REMARK 465 ASP U 171 REMARK 465 LEU U 172 REMARK 465 VAL U 173 REMARK 465 VAL U 174 REMARK 465 GLN U 175 REMARK 465 GLN U 176 REMARK 465 ALA U 177 REMARK 465 GLY U 178 REMARK 465 THR U 179 REMARK 465 ASN U 180 REMARK 465 LYS U 181 REMARK 465 THR U 182 REMARK 465 ASP U 183 REMARK 465 VAL U 184 REMARK 465 VAL U 185 REMARK 465 CYS U 186 REMARK 465 GLY U 187 REMARK 465 PRO U 188 REMARK 465 GLN U 189 REMARK 465 ASP U 190 REMARK 465 SER U 191 REMARK 465 GLY U 192 REMARK 465 ARG U 193 REMARK 465 LEU U 194 REMARK 465 VAL U 195 REMARK 465 PRO U 196 REMARK 465 ARG U 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS F 194 O6 NAG F 1411 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 194 CB CYS A 194 SG 0.122 REMARK 500 CYS D 194 CB CYS D 194 SG 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 194 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 CYS B 194 CA - CB - SG ANGL. DEV. = 11.2 DEGREES REMARK 500 CYS C 194 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS D 194 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 CYS E 194 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 130 95.75 -49.51 REMARK 500 SER A 132 -50.19 -16.55 REMARK 500 LYS A 133 138.51 141.85 REMARK 500 THR A 134 74.14 63.63 REMARK 500 GLU A 142 44.74 -75.05 REMARK 500 LYS A 143 -167.55 -108.63 REMARK 500 ASN A 150 -176.12 -178.61 REMARK 500 ASN A 151 20.98 -68.86 REMARK 500 LEU A 155 78.67 -106.04 REMARK 500 ALA A 173 140.25 -173.23 REMARK 500 LEU A 193 59.59 -108.20 REMARK 500 ARG A 203 -133.43 -130.63 REMARK 500 LYS A 216 -90.17 -49.79 REMARK 500 CYS A 218 -35.31 -173.69 REMARK 500 ALA B 130 173.58 -56.47 REMARK 500 THR B 135 155.63 -44.59 REMARK 500 GLU B 142 36.20 -76.89 REMARK 500 ASN B 150 -176.68 -179.71 REMARK 500 ASN B 151 26.00 -68.63 REMARK 500 LEU B 155 75.36 -109.37 REMARK 500 ASN B 157 17.80 50.51 REMARK 500 ALA B 173 137.35 -176.69 REMARK 500 PHE B 189 117.73 -23.62 REMARK 500 LEU B 193 52.15 -118.00 REMARK 500 ARG B 203 -130.07 -134.86 REMARK 500 LYS B 216 -95.23 -34.65 REMARK 500 CYS B 218 -10.84 -154.47 REMARK 500 ALA C 130 106.61 -57.00 REMARK 500 THR C 134 68.78 31.54 REMARK 500 GLU C 142 38.26 -75.03 REMARK 500 SER C 149 -39.70 -37.91 REMARK 500 ASN C 150 -174.28 177.69 REMARK 500 ASN C 151 24.91 -69.91 REMARK 500 LEU C 155 71.36 -108.14 REMARK 500 ALA C 173 139.77 -171.59 REMARK 500 CYS C 178 139.25 -171.84 REMARK 500 ARG C 203 -131.88 -128.74 REMARK 500 ASN C 210 161.73 179.18 REMARK 500 SER C 214 104.53 -51.55 REMARK 500 ALA C 215 -111.95 -100.62 REMARK 500 LYS C 216 -73.85 -108.28 REMARK 500 CYS C 218 -46.70 -148.27 REMARK 500 THR C 251 114.68 -37.79 REMARK 500 GLU D 142 38.13 -71.27 REMARK 500 SER D 149 -38.03 -34.54 REMARK 500 ASN D 150 -176.36 178.97 REMARK 500 ASN D 151 22.61 -69.39 REMARK 500 LEU D 155 69.43 -110.12 REMARK 500 ASN D 157 17.80 54.61 REMARK 500 PHE D 189 113.35 -7.63 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3QD6 A 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 B 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 C 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 D 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 E 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 F 116 261 UNP P29965 CD40L_HUMAN 116 261 DBREF 3QD6 R 21 190 UNP P25942 TNR5_HUMAN 21 190 DBREF 3QD6 S 21 190 UNP P25942 TNR5_HUMAN 21 190 DBREF 3QD6 T 21 190 UNP P25942 TNR5_HUMAN 21 190 DBREF 3QD6 U 21 190 UNP P25942 TNR5_HUMAN 21 190 SEQADV 3QD6 ALA A 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP A 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO A 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ALA B 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP B 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO B 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ALA C 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP C 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO C 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ALA D 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP D 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO D 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ALA E 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP E 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO E 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ALA F 113 UNP P29965 EXPRESSION TAG SEQADV 3QD6 ASP F 114 UNP P29965 EXPRESSION TAG SEQADV 3QD6 PRO F 115 UNP P29965 EXPRESSION TAG SEQADV 3QD6 SER R 191 UNP P25942 EXPRESSION TAG SEQADV 3QD6 GLY R 192 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG R 193 UNP P25942 EXPRESSION TAG SEQADV 3QD6 LEU R 194 UNP P25942 EXPRESSION TAG SEQADV 3QD6 VAL R 195 UNP P25942 EXPRESSION TAG SEQADV 3QD6 PRO R 196 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG R 197 UNP P25942 EXPRESSION TAG SEQADV 3QD6 SER S 191 UNP P25942 EXPRESSION TAG SEQADV 3QD6 GLY S 192 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG S 193 UNP P25942 EXPRESSION TAG SEQADV 3QD6 LEU S 194 UNP P25942 EXPRESSION TAG SEQADV 3QD6 VAL S 195 UNP P25942 EXPRESSION TAG SEQADV 3QD6 PRO S 196 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG S 197 UNP P25942 EXPRESSION TAG SEQADV 3QD6 SER T 191 UNP P25942 EXPRESSION TAG SEQADV 3QD6 GLY T 192 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG T 193 UNP P25942 EXPRESSION TAG SEQADV 3QD6 LEU T 194 UNP P25942 EXPRESSION TAG SEQADV 3QD6 VAL T 195 UNP P25942 EXPRESSION TAG SEQADV 3QD6 PRO T 196 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG T 197 UNP P25942 EXPRESSION TAG SEQADV 3QD6 SER U 191 UNP P25942 EXPRESSION TAG SEQADV 3QD6 GLY U 192 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG U 193 UNP P25942 EXPRESSION TAG SEQADV 3QD6 LEU U 194 UNP P25942 EXPRESSION TAG SEQADV 3QD6 VAL U 195 UNP P25942 EXPRESSION TAG SEQADV 3QD6 PRO U 196 UNP P25942 EXPRESSION TAG SEQADV 3QD6 ARG U 197 UNP P25942 EXPRESSION TAG SEQRES 1 A 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 A 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 A 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 A 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 A 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 A 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 A 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 A 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 A 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 A 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 A 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 A 149 PHE GLY LEU LEU LYS LEU SEQRES 1 B 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 B 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 B 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 B 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 B 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 B 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 B 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 B 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 B 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 B 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 B 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 B 149 PHE GLY LEU LEU LYS LEU SEQRES 1 C 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 C 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 C 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 C 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 C 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 C 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 C 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 C 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 C 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 C 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 C 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 C 149 PHE GLY LEU LEU LYS LEU SEQRES 1 D 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 D 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 D 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 D 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 D 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 D 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 D 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 D 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 D 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 D 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 D 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 D 149 PHE GLY LEU LEU LYS LEU SEQRES 1 E 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 E 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 E 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 E 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 E 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 E 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 E 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 E 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 E 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 E 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 E 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 E 149 PHE GLY LEU LEU LYS LEU SEQRES 1 F 149 ALA ASP PRO GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS SEQRES 2 F 149 VAL ILE SER GLU ALA SER SER LYS THR THR SER VAL LEU SEQRES 3 F 149 GLN TRP ALA GLU LYS GLY TYR TYR THR MET SER ASN ASN SEQRES 4 F 149 LEU VAL THR LEU GLU ASN GLY LYS GLN LEU THR VAL LYS SEQRES 5 F 149 ARG GLN GLY LEU TYR TYR ILE TYR ALA GLN VAL THR PHE SEQRES 6 F 149 CYS SER ASN ARG GLU ALA SER SER GLN ALA PRO PHE ILE SEQRES 7 F 149 ALA SER LEU CYS LEU LYS SER PRO GLY ARG PHE GLU ARG SEQRES 8 F 149 ILE LEU LEU ARG ALA ALA ASN THR HIS SER SER ALA LYS SEQRES 9 F 149 PRO CYS GLY GLN GLN SER ILE HIS LEU GLY GLY VAL PHE SEQRES 10 F 149 GLU LEU GLN PRO GLY ALA SER VAL PHE VAL ASN VAL THR SEQRES 11 F 149 ASP PRO SER GLN VAL SER HIS GLY THR GLY PHE THR SER SEQRES 12 F 149 PHE GLY LEU LEU LYS LEU SEQRES 1 R 177 GLU PRO PRO THR ALA CYS ARG GLU LYS GLN TYR LEU ILE SEQRES 2 R 177 ASN SER GLN CYS CYS SER LEU CYS GLN PRO GLY GLN LYS SEQRES 3 R 177 LEU VAL SER ASP CYS THR GLU PHE THR GLU THR GLU CYS SEQRES 4 R 177 LEU PRO CYS GLY GLU SER GLU PHE LEU ASP THR TRP ASN SEQRES 5 R 177 ARG GLU THR HIS CYS HIS GLN HIS LYS TYR CYS ASP PRO SEQRES 6 R 177 ASN LEU GLY LEU ARG VAL GLN GLN LYS GLY THR SER GLU SEQRES 7 R 177 THR ASP THR ILE CYS THR CYS GLU GLU GLY TRP HIS CYS SEQRES 8 R 177 THR SER GLU ALA CYS GLU SER CYS VAL LEU HIS ARG SER SEQRES 9 R 177 CYS SER PRO GLY PHE GLY VAL LYS GLN ILE ALA THR GLY SEQRES 10 R 177 VAL SER ASP THR ILE CYS GLU PRO CYS PRO VAL GLY PHE SEQRES 11 R 177 PHE SER ASN VAL SER SER ALA PHE GLU LYS CYS HIS PRO SEQRES 12 R 177 TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN GLN SEQRES 13 R 177 ALA GLY THR ASN LYS THR ASP VAL VAL CYS GLY PRO GLN SEQRES 14 R 177 ASP SER GLY ARG LEU VAL PRO ARG SEQRES 1 S 177 GLU PRO PRO THR ALA CYS ARG GLU LYS GLN TYR LEU ILE SEQRES 2 S 177 ASN SER GLN CYS CYS SER LEU CYS GLN PRO GLY GLN LYS SEQRES 3 S 177 LEU VAL SER ASP CYS THR GLU PHE THR GLU THR GLU CYS SEQRES 4 S 177 LEU PRO CYS GLY GLU SER GLU PHE LEU ASP THR TRP ASN SEQRES 5 S 177 ARG GLU THR HIS CYS HIS GLN HIS LYS TYR CYS ASP PRO SEQRES 6 S 177 ASN LEU GLY LEU ARG VAL GLN GLN LYS GLY THR SER GLU SEQRES 7 S 177 THR ASP THR ILE CYS THR CYS GLU GLU GLY TRP HIS CYS SEQRES 8 S 177 THR SER GLU ALA CYS GLU SER CYS VAL LEU HIS ARG SER SEQRES 9 S 177 CYS SER PRO GLY PHE GLY VAL LYS GLN ILE ALA THR GLY SEQRES 10 S 177 VAL SER ASP THR ILE CYS GLU PRO CYS PRO VAL GLY PHE SEQRES 11 S 177 PHE SER ASN VAL SER SER ALA PHE GLU LYS CYS HIS PRO SEQRES 12 S 177 TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN GLN SEQRES 13 S 177 ALA GLY THR ASN LYS THR ASP VAL VAL CYS GLY PRO GLN SEQRES 14 S 177 ASP SER GLY ARG LEU VAL PRO ARG SEQRES 1 T 177 GLU PRO PRO THR ALA CYS ARG GLU LYS GLN TYR LEU ILE SEQRES 2 T 177 ASN SER GLN CYS CYS SER LEU CYS GLN PRO GLY GLN LYS SEQRES 3 T 177 LEU VAL SER ASP CYS THR GLU PHE THR GLU THR GLU CYS SEQRES 4 T 177 LEU PRO CYS GLY GLU SER GLU PHE LEU ASP THR TRP ASN SEQRES 5 T 177 ARG GLU THR HIS CYS HIS GLN HIS LYS TYR CYS ASP PRO SEQRES 6 T 177 ASN LEU GLY LEU ARG VAL GLN GLN LYS GLY THR SER GLU SEQRES 7 T 177 THR ASP THR ILE CYS THR CYS GLU GLU GLY TRP HIS CYS SEQRES 8 T 177 THR SER GLU ALA CYS GLU SER CYS VAL LEU HIS ARG SER SEQRES 9 T 177 CYS SER PRO GLY PHE GLY VAL LYS GLN ILE ALA THR GLY SEQRES 10 T 177 VAL SER ASP THR ILE CYS GLU PRO CYS PRO VAL GLY PHE SEQRES 11 T 177 PHE SER ASN VAL SER SER ALA PHE GLU LYS CYS HIS PRO SEQRES 12 T 177 TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN GLN SEQRES 13 T 177 ALA GLY THR ASN LYS THR ASP VAL VAL CYS GLY PRO GLN SEQRES 14 T 177 ASP SER GLY ARG LEU VAL PRO ARG SEQRES 1 U 177 GLU PRO PRO THR ALA CYS ARG GLU LYS GLN TYR LEU ILE SEQRES 2 U 177 ASN SER GLN CYS CYS SER LEU CYS GLN PRO GLY GLN LYS SEQRES 3 U 177 LEU VAL SER ASP CYS THR GLU PHE THR GLU THR GLU CYS SEQRES 4 U 177 LEU PRO CYS GLY GLU SER GLU PHE LEU ASP THR TRP ASN SEQRES 5 U 177 ARG GLU THR HIS CYS HIS GLN HIS LYS TYR CYS ASP PRO SEQRES 6 U 177 ASN LEU GLY LEU ARG VAL GLN GLN LYS GLY THR SER GLU SEQRES 7 U 177 THR ASP THR ILE CYS THR CYS GLU GLU GLY TRP HIS CYS SEQRES 8 U 177 THR SER GLU ALA CYS GLU SER CYS VAL LEU HIS ARG SER SEQRES 9 U 177 CYS SER PRO GLY PHE GLY VAL LYS GLN ILE ALA THR GLY SEQRES 10 U 177 VAL SER ASP THR ILE CYS GLU PRO CYS PRO VAL GLY PHE SEQRES 11 U 177 PHE SER ASN VAL SER SER ALA PHE GLU LYS CYS HIS PRO SEQRES 12 U 177 TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN GLN SEQRES 13 U 177 ALA GLY THR ASN LYS THR ASP VAL VAL CYS GLY PRO GLN SEQRES 14 U 177 ASP SER GLY ARG LEU VAL PRO ARG MODRES 3QD6 ASN A 240 ASN GLYCOSYLATION SITE MODRES 3QD6 ASN E 240 ASN GLYCOSYLATION SITE MODRES 3QD6 ASN C 240 ASN GLYCOSYLATION SITE MODRES 3QD6 ASN B 240 ASN GLYCOSYLATION SITE MODRES 3QD6 ASN F 240 ASN GLYCOSYLATION SITE MODRES 3QD6 ASN D 240 ASN GLYCOSYLATION SITE HET NAG A1411 14 HET NAG B1411 14 HET NAG C1411 14 HET NAG D1411 14 HET NAG E1411 14 HET NAG F1411 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 11 NAG 6(C8 H15 N O6) HELIX 1 1 ASN A 157 LYS A 159 5 3 HELIX 2 2 LEU B 155 LYS B 159 5 5 HELIX 3 3 LEU C 155 LYS C 159 5 5 HELIX 4 4 LEU D 155 LYS D 159 5 5 HELIX 5 5 LEU E 155 LYS E 159 5 5 HELIX 6 6 LEU F 155 LYS F 159 5 5 HELIX 7 7 ASP R 84 LEU R 87 5 4 HELIX 8 8 ASP S 84 LEU S 87 5 4 HELIX 9 9 ASP T 84 LEU T 87 5 4 HELIX 10 10 ASP U 84 LEU U 87 5 4 SHEET 1 A 3 TRP A 140 ALA A 141 0 SHEET 2 A 3 ALA A 123 SER A 128 -1 N ILE A 127 O ALA A 141 SHEET 3 A 3 THR A 147 MET A 148 -1 O THR A 147 N HIS A 125 SHEET 1 B 5 TRP A 140 ALA A 141 0 SHEET 2 B 5 ALA A 123 SER A 128 -1 N ILE A 127 O ALA A 141 SHEET 3 B 5 SER A 255 LYS A 260 -1 O PHE A 256 N VAL A 126 SHEET 4 B 5 GLY A 167 CYS A 178 -1 N TYR A 172 O GLY A 257 SHEET 5 B 5 GLN A 220 LEU A 231 -1 O LEU A 231 N GLY A 167 SHEET 1 C 4 VAL A 153 GLU A 156 0 SHEET 2 C 4 GLN A 160 VAL A 163 -1 O THR A 162 N THR A 154 SHEET 3 C 4 SER A 236 VAL A 237 -1 O VAL A 237 N LEU A 161 SHEET 4 C 4 LEU A 195 LYS A 196 -1 N LYS A 196 O SER A 236 SHEET 1 D 3 ARG A 207 ALA A 209 0 SHEET 2 D 3 ILE A 190 SER A 192 -1 N ALA A 191 O ALA A 208 SHEET 3 D 3 ASN A 240 VAL A 241 -1 O ASN A 240 N SER A 192 SHEET 1 E 3 GLN B 139 ALA B 141 0 SHEET 2 E 3 ALA B 123 GLU B 129 -1 N ILE B 127 O ALA B 141 SHEET 3 E 3 THR B 147 MET B 148 -1 O THR B 147 N HIS B 125 SHEET 1 F 5 GLN B 139 ALA B 141 0 SHEET 2 F 5 ALA B 123 GLU B 129 -1 N ILE B 127 O ALA B 141 SHEET 3 F 5 SER B 255 LEU B 261 -1 O PHE B 256 N VAL B 126 SHEET 4 F 5 GLY B 167 CYS B 178 -1 N TYR B 172 O GLY B 257 SHEET 5 F 5 GLN B 220 LEU B 231 -1 O LEU B 231 N GLY B 167 SHEET 1 G 4 VAL B 153 THR B 154 0 SHEET 2 G 4 LEU B 161 VAL B 163 -1 O THR B 162 N THR B 154 SHEET 3 G 4 SER B 236 VAL B 237 -1 O VAL B 237 N LEU B 161 SHEET 4 G 4 LEU B 195 LYS B 196 -1 N LYS B 196 O SER B 236 SHEET 1 H 2 ILE B 190 SER B 192 0 SHEET 2 H 2 ARG B 207 ALA B 209 -1 O ALA B 208 N ALA B 191 SHEET 1 I 3 GLN C 139 ALA C 141 0 SHEET 2 I 3 ALA C 123 GLU C 129 -1 N ILE C 127 O ALA C 141 SHEET 3 I 3 THR C 147 MET C 148 -1 O THR C 147 N HIS C 125 SHEET 1 J 5 GLN C 139 ALA C 141 0 SHEET 2 J 5 ALA C 123 GLU C 129 -1 N ILE C 127 O ALA C 141 SHEET 3 J 5 SER C 255 LYS C 260 -1 O PHE C 256 N VAL C 126 SHEET 4 J 5 GLY C 167 CYS C 178 -1 N TYR C 170 O LEU C 259 SHEET 5 J 5 GLN C 220 LEU C 231 -1 O LEU C 231 N GLY C 167 SHEET 1 K 4 VAL C 153 THR C 154 0 SHEET 2 K 4 LEU C 161 VAL C 163 -1 O THR C 162 N THR C 154 SHEET 3 K 4 SER C 236 VAL C 237 -1 O VAL C 237 N LEU C 161 SHEET 4 K 4 LEU C 195 LYS C 196 -1 N LYS C 196 O SER C 236 SHEET 1 L 2 ALA C 191 SER C 192 0 SHEET 2 L 2 ARG C 207 ALA C 208 -1 O ALA C 208 N ALA C 191 SHEET 1 M 3 GLN D 139 ALA D 141 0 SHEET 2 M 3 ALA D 123 GLU D 129 -1 N ILE D 127 O ALA D 141 SHEET 3 M 3 THR D 147 MET D 148 -1 O THR D 147 N HIS D 125 SHEET 1 N 5 GLN D 139 ALA D 141 0 SHEET 2 N 5 ALA D 123 GLU D 129 -1 N ILE D 127 O ALA D 141 SHEET 3 N 5 SER D 255 LYS D 260 -1 O PHE D 256 N VAL D 126 SHEET 4 N 5 GLY D 167 THR D 176 -1 N TYR D 170 O LEU D 259 SHEET 5 N 5 SER D 222 LEU D 231 -1 O LEU D 231 N GLY D 167 SHEET 1 O 4 VAL D 153 THR D 154 0 SHEET 2 O 4 LEU D 161 VAL D 163 -1 O THR D 162 N THR D 154 SHEET 3 O 4 SER D 236 VAL D 237 -1 O VAL D 237 N LEU D 161 SHEET 4 O 4 LEU D 195 LYS D 196 -1 N LYS D 196 O SER D 236 SHEET 1 P 2 ILE D 190 SER D 192 0 SHEET 2 P 2 ARG D 207 ALA D 209 -1 O ALA D 208 N ALA D 191 SHEET 1 Q 3 GLN E 139 ALA E 141 0 SHEET 2 Q 3 ALA E 123 GLU E 129 -1 N ILE E 127 O ALA E 141 SHEET 3 Q 3 THR E 147 MET E 148 -1 O THR E 147 N HIS E 125 SHEET 1 R 5 GLN E 139 ALA E 141 0 SHEET 2 R 5 ALA E 123 GLU E 129 -1 N ILE E 127 O ALA E 141 SHEET 3 R 5 SER E 255 LYS E 260 -1 O PHE E 256 N VAL E 126 SHEET 4 R 5 GLY E 167 CYS E 178 -1 N TYR E 172 O GLY E 257 SHEET 5 R 5 GLN E 220 LEU E 231 -1 O LEU E 231 N GLY E 167 SHEET 1 S 4 VAL E 153 THR E 154 0 SHEET 2 S 4 LEU E 161 VAL E 163 -1 O THR E 162 N THR E 154 SHEET 3 S 4 SER E 236 VAL E 237 -1 O VAL E 237 N LEU E 161 SHEET 4 S 4 LEU E 195 LYS E 196 -1 N LYS E 196 O SER E 236 SHEET 1 T 2 PHE E 189 SER E 192 0 SHEET 2 T 2 ARG E 207 ASN E 210 -1 O ALA E 208 N ALA E 191 SHEET 1 U 3 TRP F 140 ALA F 141 0 SHEET 2 U 3 ALA F 123 SER F 128 -1 N ILE F 127 O ALA F 141 SHEET 3 U 3 THR F 147 MET F 148 -1 O THR F 147 N HIS F 125 SHEET 1 V 5 TRP F 140 ALA F 141 0 SHEET 2 V 5 ALA F 123 SER F 128 -1 N ILE F 127 O ALA F 141 SHEET 3 V 5 SER F 255 LYS F 260 -1 O PHE F 256 N VAL F 126 SHEET 4 V 5 GLY F 167 CYS F 178 -1 N TYR F 172 O GLY F 257 SHEET 5 V 5 GLN F 220 LEU F 231 -1 O LEU F 225 N ALA F 173 SHEET 1 W 4 VAL F 153 THR F 154 0 SHEET 2 W 4 LEU F 161 VAL F 163 -1 O THR F 162 N THR F 154 SHEET 3 W 4 SER F 236 VAL F 237 -1 O VAL F 237 N LEU F 161 SHEET 4 W 4 LEU F 195 LYS F 196 -1 N LYS F 196 O SER F 236 SHEET 1 X 3 ARG F 207 ALA F 208 0 SHEET 2 X 3 ALA F 191 SER F 192 -1 N ALA F 191 O ALA F 208 SHEET 3 X 3 ASN F 240 VAL F 241 -1 O ASN F 240 N SER F 192 SHEET 1 Y 2 TYR R 31 LEU R 32 0 SHEET 2 Y 2 CYS R 37 CYS R 38 -1 O CYS R 38 N TYR R 31 SHEET 1 Z 2 GLU R 66 PHE R 67 0 SHEET 2 Z 2 HIS R 78 GLN R 79 -1 O HIS R 78 N PHE R 67 SHEET 1 AA 2 LEU R 89 GLN R 93 0 SHEET 2 AA 2 ILE R 102 CYS R 105 -1 O ILE R 102 N GLN R 93 SHEET 1 AB 2 TRP R 109 CYS R 111 0 SHEET 2 AB 2 CYS R 119 LEU R 121 -1 O VAL R 120 N HIS R 110 SHEET 1 AC 2 GLN S 30 LEU S 32 0 SHEET 2 AC 2 CYS S 37 SER S 39 -1 O CYS S 38 N TYR S 31 SHEET 1 AD 2 GLN S 45 SER S 49 0 SHEET 2 AD 2 GLU S 58 PRO S 61 -1 O LEU S 60 N LYS S 46 SHEET 1 AE 2 GLU S 66 PHE S 67 0 SHEET 2 AE 2 HIS S 78 GLN S 79 -1 O HIS S 78 N PHE S 67 SHEET 1 AF 2 LEU S 89 GLN S 93 0 SHEET 2 AF 2 ILE S 102 CYS S 105 -1 O ILE S 102 N GLN S 93 SHEET 1 AG 2 GLN T 30 ILE T 33 0 SHEET 2 AG 2 GLN T 36 SER T 39 -1 O GLN T 36 N ILE T 33 SHEET 1 AH 2 GLN T 45 SER T 49 0 SHEET 2 AH 2 GLU T 58 PRO T 61 -1 O LEU T 60 N LYS T 46 SHEET 1 AI 2 GLU T 66 PHE T 67 0 SHEET 2 AI 2 HIS T 78 GLN T 79 -1 O HIS T 78 N PHE T 67 SHEET 1 AJ 2 LEU T 89 GLN T 93 0 SHEET 2 AJ 2 ILE T 102 CYS T 105 -1 O ILE T 102 N GLN T 93 SHEET 1 AK 2 TRP T 109 CYS T 111 0 SHEET 2 AK 2 CYS T 119 LEU T 121 -1 O VAL T 120 N HIS T 110 SHEET 1 AL 2 GLN U 30 ILE U 33 0 SHEET 2 AL 2 GLN U 36 SER U 39 -1 O GLN U 36 N ILE U 33 SHEET 1 AM 2 GLN U 45 SER U 49 0 SHEET 2 AM 2 GLU U 58 PRO U 61 -1 O GLU U 58 N VAL U 48 SHEET 1 AN 2 GLU U 66 PHE U 67 0 SHEET 2 AN 2 HIS U 78 GLN U 79 -1 O HIS U 78 N PHE U 67 SHEET 1 AO 2 LEU U 89 GLN U 93 0 SHEET 2 AO 2 ILE U 102 CYS U 105 -1 O ILE U 102 N GLN U 93 SHEET 1 AP 2 TRP U 109 CYS U 111 0 SHEET 2 AP 2 CYS U 119 LEU U 121 -1 O VAL U 120 N HIS U 110 SSBOND 1 CYS A 178 CYS A 218 1555 1555 2.03 SSBOND 2 CYS B 178 CYS B 218 1555 1555 2.03 SSBOND 3 CYS C 178 CYS C 218 1555 1555 2.04 SSBOND 4 CYS D 178 CYS D 218 1555 1555 2.03 SSBOND 5 CYS E 178 CYS E 218 1555 1555 2.04 SSBOND 6 CYS F 178 CYS F 218 1555 1555 2.03 SSBOND 7 CYS R 26 CYS R 37 1555 1555 2.02 SSBOND 8 CYS R 38 CYS R 51 1555 1555 2.03 SSBOND 9 CYS R 41 CYS R 59 1555 1555 2.03 SSBOND 10 CYS R 62 CYS R 77 1555 1555 2.03 SSBOND 11 CYS R 83 CYS R 103 1555 1555 2.04 SSBOND 12 CYS R 105 CYS R 119 1555 1555 2.03 SSBOND 13 CYS R 111 CYS R 116 1555 1555 2.03 SSBOND 14 CYS R 125 CYS R 143 1555 1555 2.03 SSBOND 15 CYS S 26 CYS S 37 1555 1555 2.03 SSBOND 16 CYS S 38 CYS S 51 1555 1555 2.02 SSBOND 17 CYS S 41 CYS S 59 1555 1555 2.02 SSBOND 18 CYS S 62 CYS S 77 1555 1555 2.05 SSBOND 19 CYS S 83 CYS S 103 1555 1555 2.03 SSBOND 20 CYS S 105 CYS S 119 1555 1555 2.03 SSBOND 21 CYS S 111 CYS S 116 1555 1555 2.03 SSBOND 22 CYS S 125 CYS S 143 1555 1555 2.03 SSBOND 23 CYS T 26 CYS T 37 1555 1555 2.03 SSBOND 24 CYS T 38 CYS T 51 1555 1555 2.03 SSBOND 25 CYS T 41 CYS T 59 1555 1555 2.03 SSBOND 26 CYS T 62 CYS T 77 1555 1555 2.04 SSBOND 27 CYS T 83 CYS T 103 1555 1555 2.02 SSBOND 28 CYS T 105 CYS T 119 1555 1555 2.03 SSBOND 29 CYS T 111 CYS T 116 1555 1555 2.03 SSBOND 30 CYS T 125 CYS T 143 1555 1555 2.05 SSBOND 31 CYS U 26 CYS U 37 1555 1555 2.03 SSBOND 32 CYS U 38 CYS U 51 1555 1555 2.03 SSBOND 33 CYS U 41 CYS U 59 1555 1555 2.02 SSBOND 34 CYS U 62 CYS U 77 1555 1555 2.04 SSBOND 35 CYS U 83 CYS U 103 1555 1555 2.03 SSBOND 36 CYS U 105 CYS U 119 1555 1555 2.04 SSBOND 37 CYS U 111 CYS U 116 1555 1555 2.03 SSBOND 38 CYS U 125 CYS U 143 1555 1555 2.03 LINK ND2 ASN A 240 C1 NAG A1411 1555 1555 1.45 LINK ND2 ASN B 240 C1 NAG B1411 1555 1555 1.46 LINK ND2 ASN C 240 C1 NAG C1411 1555 1555 1.45 LINK ND2 ASN D 240 C1 NAG D1411 1555 1555 1.46 LINK ND2 ASN E 240 C1 NAG E1411 1555 1555 1.45 LINK ND2 ASN F 240 C1 NAG F1411 1555 1555 1.46 CRYST1 133.212 133.212 211.151 90.00 90.00 120.00 P 65 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007507 0.004334 0.000000 0.00000 SCALE2 0.000000 0.008668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004736 0.00000