HEADER PROTEIN TRANSPORT 19-JAN-11 3QDP TITLE STRUCTURAL CHARACTERIZATION OF THE INTERACTION OF COLICIN A, COLICIN TITLE 2 N, AND TOLB WITH TOLAIII TRANSLOCON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOLA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TOLA DOMAIN III, RESIDUES 302-421; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: TOLA, CIM, EXCC, LKY, B0739, JW0729; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS TOLA, TRANSLOCATION, COLICIN, TOLB, COLA, COLN, METHYLATION, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.LI REVDAT 3 20-JUN-12 3QDP 1 JRNL REVDAT 2 09-MAY-12 3QDP 1 JRNL REVDAT 1 25-JAN-12 3QDP 0 JRNL AUTH C.LI,Y.ZHANG,M.VANKEMMELBEKE,O.HECHT,F.S.ALEANIZY, JRNL AUTH 2 C.MACDONALD,G.R.MOORE,R.JAMES,C.N.PENFOLD JRNL TITL STRUCTURAL EVIDENCE THAT COLICIN A PROTEIN BINDS TO A NOVEL JRNL TITL 2 BINDING SITE OF TOLA PROTEIN IN ESCHERICHIA COLI PERIPLASM. JRNL REF J.BIOL.CHEM. V. 287 19048 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22493500 JRNL DOI 10.1074/JBC.M112.342246 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 577 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 712 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 973 ; 2.371 ; 2.040 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 98 ; 7.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;37.748 ;26.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 110 ;17.785 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;24.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 107 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 550 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 466 ; 1.234 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 741 ; 2.014 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 246 ; 3.498 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 226 ; 5.473 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0362 30.5266 5.7116 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.1333 REMARK 3 T33: 0.3010 T12: 0.0286 REMARK 3 T13: -0.0887 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 4.0413 L22: 0.7518 REMARK 3 L33: 8.1981 L12: -0.7184 REMARK 3 L13: -4.7875 L23: 1.8837 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: 0.0506 S13: 0.6173 REMARK 3 S21: -0.0724 S22: -0.0555 S23: 0.2298 REMARK 3 S31: -0.6435 S32: -0.2248 S33: -0.0379 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0536 20.7003 -1.2332 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1377 REMARK 3 T33: 0.1458 T12: 0.0063 REMARK 3 T13: 0.0046 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.7521 L22: 3.8469 REMARK 3 L33: 6.5337 L12: 1.0397 REMARK 3 L13: 2.1412 L23: 3.8267 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0225 S13: 0.0650 REMARK 3 S21: -0.0532 S22: -0.0485 S23: 0.2574 REMARK 3 S31: 0.0120 S32: -0.2232 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3857 12.6764 2.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2116 REMARK 3 T33: 0.2036 T12: 0.0100 REMARK 3 T13: -0.0118 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8075 L22: 0.4754 REMARK 3 L33: 1.6166 L12: 0.6875 REMARK 3 L13: 1.2377 L23: 0.2668 REMARK 3 S TENSOR REMARK 3 S11: 0.2164 S12: -0.4188 S13: -0.1960 REMARK 3 S21: 0.2787 S22: -0.1369 S23: -0.1185 REMARK 3 S31: 0.0813 S32: -0.0666 S33: -0.0795 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0128 17.2466 -0.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.2898 REMARK 3 T33: 0.2727 T12: 0.0076 REMARK 3 T13: -0.0111 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.7675 L22: 4.0677 REMARK 3 L33: 2.1802 L12: 1.1005 REMARK 3 L13: -0.7817 L23: -1.5720 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: -0.0737 S13: -0.1459 REMARK 3 S21: -0.0869 S22: -0.0369 S23: -0.1206 REMARK 3 S31: 0.1895 S32: 0.0306 S33: 0.0829 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 385 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6771 8.5784 -0.0249 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.2622 REMARK 3 T33: 0.3265 T12: -0.0194 REMARK 3 T13: -0.0533 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.6570 L22: 1.7750 REMARK 3 L33: 4.7045 L12: 0.6226 REMARK 3 L13: -1.2206 L23: -2.6063 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: -0.2359 S13: -0.3227 REMARK 3 S21: 0.0491 S22: -0.0982 S23: -0.1631 REMARK 3 S31: 0.3982 S32: 0.2602 S33: 0.1848 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 396 A 412 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9169 26.7815 -1.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1429 REMARK 3 T33: 0.1273 T12: 0.0314 REMARK 3 T13: -0.0016 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.4750 L22: 2.5747 REMARK 3 L33: 3.4709 L12: 2.4197 REMARK 3 L13: 2.3372 L23: 2.3107 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: 0.2108 S13: -0.0252 REMARK 3 S21: -0.2348 S22: 0.0992 S23: 0.0596 REMARK 3 S31: -0.0132 S32: -0.0160 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 413 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0601 18.6602 6.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1372 REMARK 3 T33: 0.1643 T12: 0.0333 REMARK 3 T13: 0.0016 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 8.5415 L22: 4.0956 REMARK 3 L33: 2.8367 L12: 4.1879 REMARK 3 L13: 1.8341 L23: 0.6805 REMARK 3 S TENSOR REMARK 3 S11: 0.2061 S12: -0.3948 S13: 0.0707 REMARK 3 S21: 0.1917 S22: -0.1565 S23: 0.1658 REMARK 3 S31: 0.0890 S32: -0.1452 S33: -0.0496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB063514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.28 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : 0.45600 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NANO3, 2.2 M AMMONIUM SULPHATE, REMARK 280 PH 5.28, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.94000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.88000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.88000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 MET A 301 REMARK 465 SER A 302 REMARK 465 SER A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 ASN A 306 REMARK 465 ALA A 307 REMARK 465 PRO A 308 REMARK 465 LYS A 309 REMARK 465 THR A 310 REMARK 465 GLY A 311 REMARK 465 GLY A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 ASN A 317 REMARK 465 ASN A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 PRO A 321 REMARK 465 ALA A 322 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 ASN A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 465 ASN A 329 REMARK 465 ASN A 330 REMARK 465 GLY A 331 REMARK 465 ALA A 332 REMARK 465 SER A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 384 123.83 -38.30 REMARK 500 ALA A 415 148.26 177.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QDR RELATED DB: PDB DBREF 3QDP A 302 421 UNP Q8FJT1 TOLA_ECOLI 302 421 SEQADV 3QDP HIS A 295 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP HIS A 296 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP HIS A 297 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP HIS A 298 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP HIS A 299 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP HIS A 300 UNP Q8FJT1 EXPRESSION TAG SEQADV 3QDP MET A 301 UNP Q8FJT1 EXPRESSION TAG SEQRES 1 A 127 HIS HIS HIS HIS HIS HIS MET SER SER GLY LYS ASN ALA SEQRES 2 A 127 PRO LYS THR GLY GLY GLY ALA LYS GLY ASN ASN ALA SER SEQRES 3 A 127 PRO ALA GLY SER GLY ASN THR LYS ASN ASN GLY ALA SER SEQRES 4 A 127 GLY ALA ASP ILE ASN ASN TYR ALA GLY GLN ILE MLY SER SEQRES 5 A 127 ALA ILE GLU SER MLZ PHE TYR ASP ALA SER SER TYR ALA SEQRES 6 A 127 GLY LYS THR CYS THR LEU ARG ILE LYS LEU ALA PRO ASP SEQRES 7 A 127 GLY MET LEU LEU ASP ILE LYS PRO GLU GLY GLY ASP PRO SEQRES 8 A 127 ALA LEU CYS GLN ALA ALA LEU ALA ALA ALA LYS LEU ALA SEQRES 9 A 127 LYS ILE PRO LYS PRO PRO SER GLN ALA VAL TYR GLU VAL SEQRES 10 A 127 PHE MLY ASN ALA PRO LEU ASP PHE LYS PRO MODRES 3QDP MLY A 345 LYS N-DIMETHYL-LYSINE MODRES 3QDP MLZ A 351 LYS N-METHYL-LYSINE MODRES 3QDP MLY A 413 LYS N-DIMETHYL-LYSINE HET MLY A 345 11 HET MLZ A 351 10 HET MLY A 413 11 HET NO3 A 501 4 HET NO3 A 502 4 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MLZ N-METHYL-LYSINE HETNAM NO3 NITRATE ION FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 2 NO3 2(N O3 1-) FORMUL 4 HOH *43(H2 O) HELIX 1 1 ASP A 336 SER A 350 1 15 HELIX 2 2 ASP A 354 ALA A 359 5 6 HELIX 3 3 ASP A 384 LYS A 396 1 13 HELIX 4 4 SER A 405 MLY A 413 1 9 SHEET 1 A 3 LEU A 375 GLY A 383 0 SHEET 2 A 3 CYS A 363 LEU A 369 -1 N ARG A 366 O LYS A 379 SHEET 3 A 3 ALA A 415 PHE A 419 -1 O PHE A 419 N CYS A 363 SSBOND 1 CYS A 363 CYS A 388 1555 1555 2.25 LINK C ILE A 344 N MLY A 345 1555 1555 1.33 LINK C MLY A 345 N SER A 346 1555 1555 1.33 LINK C SER A 350 N MLZ A 351 1555 1555 1.34 LINK C MLZ A 351 N PHE A 352 1555 1555 1.34 LINK C PHE A 412 N MLY A 413 1555 1555 1.34 LINK C MLY A 413 N ASN A 414 1555 1555 1.31 SITE 1 AC1 6 HOH A 13 HOH A 38 HOH A 43 ARG A 366 SITE 2 AC1 6 MLY A 413 PRO A 416 SITE 1 AC2 6 MLY A 345 PHE A 352 TYR A 353 ASP A 354 SITE 2 AC2 6 LEU A 417 ASP A 418 CRYST1 70.283 70.283 53.820 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014228 0.008215 0.000000 0.00000 SCALE2 0.000000 0.016429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018580 0.00000