HEADER SUGAR BINDING PROTEIN 19-JAN-11 3QDX TITLE STRUCTURE OF THE ORTHORHOMBIC FORM OF THE BOLETUS EDULIS LECTIN IN TITLE 2 COMPLEX WITH T-ANTIGEN DISACCHARIDE AND N,N-DIACETYL CHITOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOLETUS EDULIS LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOLETUS EDULIS; SOURCE 3 ORGANISM_TAXID: 36056 KEYWDS BOLETUS EDULIS, LECTIN, MUSHROOM, T-ANTIGEN DISACCHARIDE, N, N- KEYWDS 2 DIACETYL CHITOBIOSE, CARBOHYDRATE, SUGAR BINDING, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOVI,M.E.CARRIZO,S.CAPALDI,M.PERDUCA,L.R.CHIARELLI,M.GALLIANO, AUTHOR 2 H.L.MONACO REVDAT 5 27-NOV-24 3QDX 1 REMARK REVDAT 4 13-SEP-23 3QDX 1 HETSYN REVDAT 3 29-JUL-20 3QDX 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 02-NOV-11 3QDX 1 JRNL VERSN REVDAT 1 23-FEB-11 3QDX 0 JRNL AUTH M.BOVI,M.E.CARRIZO,S.CAPALDI,M.PERDUCA,L.R.CHIARELLI, JRNL AUTH 2 M.GALLIANO,H.L.MONACO JRNL TITL STRUCTURE OF A LECTIN WITH ANTITUMORAL PROPERTIES IN KING JRNL TITL 2 BOLETE (BOLETUS EDULIS) MUSHROOMS. JRNL REF GLYCOBIOLOGY V. 21 1000 2011 JRNL REFN ISSN 0959-6658 JRNL PMID 21303815 JRNL DOI 10.1093/GLYCOB/CWR012 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1567 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2158 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2374 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3220 ; 1.226 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;31.121 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;11.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1770 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 1.817 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2270 ; 2.829 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 970 ; 4.636 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 950 ; 6.809 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8061 -11.4889 -4.0940 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0103 REMARK 3 T33: 0.0116 T12: 0.0085 REMARK 3 T13: 0.0034 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1946 L22: 0.4428 REMARK 3 L33: 0.2162 L12: 0.1709 REMARK 3 L13: 0.0012 L23: -0.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0119 S13: -0.0039 REMARK 3 S21: 0.0023 S22: 0.0031 S23: -0.0170 REMARK 3 S31: 0.0440 S32: 0.0139 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4882 10.7983 -5.6513 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0257 REMARK 3 T33: 0.0085 T12: 0.0112 REMARK 3 T13: -0.0046 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2173 L22: 0.4928 REMARK 3 L33: 0.2156 L12: 0.2363 REMARK 3 L13: -0.0432 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.0433 S13: 0.0022 REMARK 3 S21: 0.0012 S22: 0.0166 S23: -0.0160 REMARK 3 S31: -0.0458 S32: -0.0460 S33: -0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3QDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 0.05M MES, 10% REMARK 280 DIOXANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.22850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.22850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.98100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.98100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.22850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.98100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.22850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.98100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 22 145.25 -170.49 REMARK 500 ASN A 134 73.94 -120.00 REMARK 500 ASN B 134 76.94 -114.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QDS RELATED DB: PDB REMARK 900 RELATED ID: 3QDT RELATED DB: PDB REMARK 900 RELATED ID: 3QDU RELATED DB: PDB REMARK 900 RELATED ID: 3QDW RELATED DB: PDB REMARK 900 RELATED ID: 3QDV RELATED DB: PDB REMARK 900 RELATED ID: 3QDY RELATED DB: PDB DBREF 3QDX A 0 142 PDB 3QDX 3QDX 0 142 DBREF 3QDX B 0 142 PDB 3QDX 3QDX 0 142 SEQRES 1 A 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 A 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 A 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 A 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 A 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 A 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 A 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 A 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 A 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 A 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 A 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER SEQRES 1 B 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 B 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 B 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 B 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 B 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 B 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 B 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 B 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 B 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 B 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 B 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER HET ACE A 0 3 HET ACE B 0 3 HET A2G C 1 15 HET GAL C 2 11 HET A2G D 1 15 HET GAL D 2 11 HET NAG E 1 1 HET NAG E 2 14 HET NAG F 1 1 HET NAG F 2 14 HETNAM ACE ACETYL GROUP HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 A2G 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 7 HOH *118(H2 O) HELIX 1 1 ASN A 12 GLY A 16 5 5 HELIX 2 2 THR A 88 ASN A 93 1 6 HELIX 3 3 PRO A 94 TYR A 97 5 4 HELIX 4 4 ARG A 102 LYS A 108 1 7 HELIX 5 5 ASN B 12 GLY B 16 5 5 HELIX 6 6 THR B 88 ASN B 93 1 6 HELIX 7 7 PRO B 94 TYR B 97 5 4 HELIX 8 8 ARG B 102 LYS B 108 1 7 SHEET 1 A 6 GLY A 32 ALA A 37 0 SHEET 2 A 6 THR A 40 MET A 45 -1 O THR A 42 N SER A 35 SHEET 3 A 6 TYR A 2 GLN A 10 -1 N TYR A 2 O MET A 45 SHEET 4 A 6 ASN A 134 SER A 142 1 O VAL A 139 N PHE A 9 SHEET 5 A 6 ARG A 122 VAL A 129 -1 N ARG A 122 O SER A 142 SHEET 6 A 6 GLU A 112 THR A 116 -1 N VAL A 115 O PHE A 123 SHEET 1 B 4 PHE A 18 VAL A 25 0 SHEET 2 B 4 SER A 51 SER A 58 -1 O ARG A 55 N VAL A 21 SHEET 3 B 4 LEU A 63 HIS A 71 -1 O ILE A 64 N PHE A 56 SHEET 4 B 4 LYS A 74 VAL A 80 -1 O LYS A 74 N HIS A 71 SHEET 1 C 6 GLY B 32 ALA B 37 0 SHEET 2 C 6 THR B 40 MET B 45 -1 O THR B 44 N THR B 33 SHEET 3 C 6 TYR B 2 GLN B 10 -1 N LEU B 6 O HIS B 41 SHEET 4 C 6 ASN B 134 PHE B 141 1 O VAL B 139 N PHE B 9 SHEET 5 C 6 ARG B 122 VAL B 129 -1 N GLU B 124 O ILE B 140 SHEET 6 C 6 GLU B 112 THR B 116 -1 N VAL B 115 O PHE B 123 SHEET 1 D 4 PHE B 18 VAL B 25 0 SHEET 2 D 4 SER B 51 SER B 58 -1 O ARG B 55 N VAL B 21 SHEET 3 D 4 LEU B 63 HIS B 71 -1 O ILE B 64 N PHE B 56 SHEET 4 D 4 LYS B 74 VAL B 80 -1 O LYS B 74 N HIS B 71 LINK C ACE A 0 N THR A 1 1555 1555 1.33 LINK C ACE B 0 N THR B 1 1555 1555 1.32 LINK O3 A2G C 1 C1 GAL C 2 1555 1555 1.42 LINK O3 A2G D 1 C1 GAL D 2 1555 1555 1.42 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 CRYST1 68.161 97.962 84.457 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011840 0.00000 HETATM 1 C ACE A 0 -14.715 -3.148 -21.906 1.00 10.89 C ANISOU 1 C ACE A 0 1526 1419 1192 -84 59 117 C HETATM 2 O ACE A 0 -13.811 -3.639 -21.236 1.00 10.48 O ANISOU 2 O ACE A 0 1462 1369 1151 -66 81 99 O HETATM 3 CH3 ACE A 0 -14.502 -2.759 -23.362 1.00 10.58 C ANISOU 3 CH3 ACE A 0 1516 1383 1120 -111 61 125 C