data_3QDY # _entry.id 3QDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QDY pdb_00003qdy 10.2210/pdb3qdy/pdb RCSB RCSB063523 ? ? WWPDB D_1000063523 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-02 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-09-13 6 'Structure model' 2 2 2024-11-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Refinement description' 12 5 'Structure model' 'Structure summary' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen 21 5 'Structure model' chem_comp 22 5 'Structure model' chem_comp_atom 23 5 'Structure model' chem_comp_bond 24 5 'Structure model' database_2 25 5 'Structure model' pdbx_initial_refinement_model 26 6 'Structure model' pdbx_entry_details 27 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 4 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 4 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 4 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 4 'Structure model' '_atom_site_anisotrop.type_symbol' 28 4 'Structure model' '_chem_comp.formula' 29 4 'Structure model' '_chem_comp.formula_weight' 30 4 'Structure model' '_chem_comp.id' 31 4 'Structure model' '_chem_comp.mon_nstd_flag' 32 4 'Structure model' '_chem_comp.name' 33 4 'Structure model' '_chem_comp.type' 34 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 35 5 'Structure model' '_chem_comp.pdbx_synonyms' 36 5 'Structure model' '_database_2.pdbx_DOI' 37 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QDY _pdbx_database_status.recvd_initial_deposition_date 2011-01-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QDS 'Structure of Apo Boletus edulis lectin' unspecified PDB 3QDT 'Structure of Boletus edulis lectin in complex with T-antigen' unspecified PDB 3QDU 'Structure of Boletus edulis lectin in complex with N,N-diacetyl chitobiose' unspecified PDB 3QDV 'Structure of the orthorhombic form of the Boletus edulis lectin in complex with N-acetyl glucosamine and N-acetyl galactosamine' unspecified PDB 3QDW 'Structure of the hexagonal form of the Boletus edulis lectin in complex with N-acetyl glucosamine and N-acetyl galactosamine' unspecified PDB 3QDX 'Structure of the orthorhombic form of the Boletus edulis lectin in complex with T-antigen and N,N-diacetyl chitobiose' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bovi, M.' 1 'Carrizo, M.E.' 2 'Capaldi, S.' 3 'Perduca, M.' 4 'Chiarelli, L.R.' 5 'Galliano, M.' 6 'Monaco, H.L.' 7 # _citation.id primary _citation.title 'Structure of a lectin with antitumoral properties in king bolete (Boletus edulis) mushrooms.' _citation.journal_abbrev Glycobiology _citation.journal_volume 21 _citation.page_first 1000 _citation.page_last 1009 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0959-6658 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21303815 _citation.pdbx_database_id_DOI 10.1093/glycob/cwr012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bovi, M.' 1 ? primary 'Carrizo, M.E.' 2 ? primary 'Capaldi, S.' 3 ? primary 'Perduca, M.' 4 ? primary 'Chiarelli, L.R.' 5 ? primary 'Galliano, M.' 6 ? primary 'Monaco, H.L.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'BOLETUS EDULIS LECTIN' 15851.834 2 ? ? ? ? 2 branched man 'beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose' 383.349 2 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 4 water nat water 18.015 114 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Thomsen-Friedenreich antigen' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)TYSITLRVFQRNPGRGFFSIVEKTVFHYANGGTWSEAKGTHTLTMGGSGTSGVLRFMSDKGELITVAVGVHNYKR WCDVVTGLKPEETALVINPQYYNNGPRAYTREKQLAEYNVTSVVGTRFEVKYTVVEGNNLEANVIFS ; _entity_poly.pdbx_seq_one_letter_code_can ;XTYSITLRVFQRNPGRGFFSIVEKTVFHYANGGTWSEAKGTHTLTMGGSGTSGVLRFMSDKGELITVAVGVHNYKRWCDV VTGLKPEETALVINPQYYNNGPRAYTREKQLAEYNVTSVVGTRFEVKYTVVEGNNLEANVIFS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 THR n 1 3 TYR n 1 4 SER n 1 5 ILE n 1 6 THR n 1 7 LEU n 1 8 ARG n 1 9 VAL n 1 10 PHE n 1 11 GLN n 1 12 ARG n 1 13 ASN n 1 14 PRO n 1 15 GLY n 1 16 ARG n 1 17 GLY n 1 18 PHE n 1 19 PHE n 1 20 SER n 1 21 ILE n 1 22 VAL n 1 23 GLU n 1 24 LYS n 1 25 THR n 1 26 VAL n 1 27 PHE n 1 28 HIS n 1 29 TYR n 1 30 ALA n 1 31 ASN n 1 32 GLY n 1 33 GLY n 1 34 THR n 1 35 TRP n 1 36 SER n 1 37 GLU n 1 38 ALA n 1 39 LYS n 1 40 GLY n 1 41 THR n 1 42 HIS n 1 43 THR n 1 44 LEU n 1 45 THR n 1 46 MET n 1 47 GLY n 1 48 GLY n 1 49 SER n 1 50 GLY n 1 51 THR n 1 52 SER n 1 53 GLY n 1 54 VAL n 1 55 LEU n 1 56 ARG n 1 57 PHE n 1 58 MET n 1 59 SER n 1 60 ASP n 1 61 LYS n 1 62 GLY n 1 63 GLU n 1 64 LEU n 1 65 ILE n 1 66 THR n 1 67 VAL n 1 68 ALA n 1 69 VAL n 1 70 GLY n 1 71 VAL n 1 72 HIS n 1 73 ASN n 1 74 TYR n 1 75 LYS n 1 76 ARG n 1 77 TRP n 1 78 CYS n 1 79 ASP n 1 80 VAL n 1 81 VAL n 1 82 THR n 1 83 GLY n 1 84 LEU n 1 85 LYS n 1 86 PRO n 1 87 GLU n 1 88 GLU n 1 89 THR n 1 90 ALA n 1 91 LEU n 1 92 VAL n 1 93 ILE n 1 94 ASN n 1 95 PRO n 1 96 GLN n 1 97 TYR n 1 98 TYR n 1 99 ASN n 1 100 ASN n 1 101 GLY n 1 102 PRO n 1 103 ARG n 1 104 ALA n 1 105 TYR n 1 106 THR n 1 107 ARG n 1 108 GLU n 1 109 LYS n 1 110 GLN n 1 111 LEU n 1 112 ALA n 1 113 GLU n 1 114 TYR n 1 115 ASN n 1 116 VAL n 1 117 THR n 1 118 SER n 1 119 VAL n 1 120 VAL n 1 121 GLY n 1 122 THR n 1 123 ARG n 1 124 PHE n 1 125 GLU n 1 126 VAL n 1 127 LYS n 1 128 TYR n 1 129 THR n 1 130 VAL n 1 131 VAL n 1 132 GLU n 1 133 GLY n 1 134 ASN n 1 135 ASN n 1 136 LEU n 1 137 GLU n 1 138 ALA n 1 139 ASN n 1 140 VAL n 1 141 ILE n 1 142 PHE n 1 143 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Boletus edulis' _entity_src_nat.pdbx_ncbi_taxonomy_id 36056 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-3DGalpNAca1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-GalpNAc]{[(3+1)][b-D-Galp]{}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[][b-D-GlcpNAc]{}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 A2G O3 HO3 sing ? 2 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 THR 2 1 1 THR THR A . n A 1 3 TYR 3 2 2 TYR TYR A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 GLY 15 14 14 GLY GLY A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 ILE 21 20 20 ILE ILE A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 TRP 35 34 34 TRP TRP A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 HIS 42 41 41 HIS HIS A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 MET 46 45 45 MET MET A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 SER 49 48 48 SER SER A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 MET 58 57 57 MET MET A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 THR 66 65 65 THR THR A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 HIS 72 71 71 HIS HIS A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 TYR 74 73 73 TYR TYR A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 CYS 78 77 77 CYS CYS A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 PRO 95 94 94 PRO PRO A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 TYR 98 97 97 TYR TYR A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 ASN 115 114 114 ASN ASN A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 VAL 119 118 118 VAL VAL A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 PHE 124 123 123 PHE PHE A . n A 1 125 GLU 125 124 124 GLU GLU A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 TYR 128 127 127 TYR TYR A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 ASN 134 133 133 ASN ASN A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 ALA 138 137 137 ALA ALA A . n A 1 139 ASN 139 138 138 ASN ASN A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 ILE 141 140 140 ILE ILE A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 SER 143 142 142 SER SER A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 THR 2 1 1 THR THR B . n B 1 3 TYR 3 2 2 TYR TYR B . n B 1 4 SER 4 3 3 SER SER B . n B 1 5 ILE 5 4 4 ILE ILE B . n B 1 6 THR 6 5 5 THR THR B . n B 1 7 LEU 7 6 6 LEU LEU B . n B 1 8 ARG 8 7 7 ARG ARG B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 PHE 10 9 9 PHE PHE B . n B 1 11 GLN 11 10 10 GLN GLN B . n B 1 12 ARG 12 11 11 ARG ARG B . n B 1 13 ASN 13 12 12 ASN ASN B . n B 1 14 PRO 14 13 13 PRO PRO B . n B 1 15 GLY 15 14 14 GLY GLY B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 GLY 17 16 16 GLY GLY B . n B 1 18 PHE 18 17 17 PHE PHE B . n B 1 19 PHE 19 18 18 PHE PHE B . n B 1 20 SER 20 19 19 SER SER B . n B 1 21 ILE 21 20 20 ILE ILE B . n B 1 22 VAL 22 21 21 VAL VAL B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 LYS 24 23 23 LYS LYS B . n B 1 25 THR 25 24 24 THR THR B . n B 1 26 VAL 26 25 25 VAL VAL B . n B 1 27 PHE 27 26 26 PHE PHE B . n B 1 28 HIS 28 27 27 HIS HIS B . n B 1 29 TYR 29 28 28 TYR TYR B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 ASN 31 30 30 ASN ASN B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 GLY 33 32 32 GLY GLY B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 TRP 35 34 34 TRP TRP B . n B 1 36 SER 36 35 35 SER SER B . n B 1 37 GLU 37 36 36 GLU GLU B . n B 1 38 ALA 38 37 37 ALA ALA B . n B 1 39 LYS 39 38 38 LYS LYS B . n B 1 40 GLY 40 39 39 GLY GLY B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 HIS 42 41 41 HIS HIS B . n B 1 43 THR 43 42 42 THR THR B . n B 1 44 LEU 44 43 43 LEU LEU B . n B 1 45 THR 45 44 44 THR THR B . n B 1 46 MET 46 45 45 MET MET B . n B 1 47 GLY 47 46 46 GLY GLY B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 SER 49 48 48 SER SER B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 THR 51 50 50 THR THR B . n B 1 52 SER 52 51 51 SER SER B . n B 1 53 GLY 53 52 52 GLY GLY B . n B 1 54 VAL 54 53 53 VAL VAL B . n B 1 55 LEU 55 54 54 LEU LEU B . n B 1 56 ARG 56 55 55 ARG ARG B . n B 1 57 PHE 57 56 56 PHE PHE B . n B 1 58 MET 58 57 57 MET MET B . n B 1 59 SER 59 58 58 SER SER B . n B 1 60 ASP 60 59 59 ASP ASP B . n B 1 61 LYS 61 60 60 LYS LYS B . n B 1 62 GLY 62 61 61 GLY GLY B . n B 1 63 GLU 63 62 62 GLU GLU B . n B 1 64 LEU 64 63 63 LEU LEU B . n B 1 65 ILE 65 64 64 ILE ILE B . n B 1 66 THR 66 65 65 THR THR B . n B 1 67 VAL 67 66 66 VAL VAL B . n B 1 68 ALA 68 67 67 ALA ALA B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 GLY 70 69 69 GLY GLY B . n B 1 71 VAL 71 70 70 VAL VAL B . n B 1 72 HIS 72 71 71 HIS HIS B . n B 1 73 ASN 73 72 72 ASN ASN B . n B 1 74 TYR 74 73 73 TYR TYR B . n B 1 75 LYS 75 74 74 LYS LYS B . n B 1 76 ARG 76 75 75 ARG ARG B . n B 1 77 TRP 77 76 76 TRP TRP B . n B 1 78 CYS 78 77 77 CYS CYS B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 VAL 80 79 79 VAL VAL B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 THR 82 81 81 THR THR B . n B 1 83 GLY 83 82 82 GLY GLY B . n B 1 84 LEU 84 83 83 LEU LEU B . n B 1 85 LYS 85 84 84 LYS LYS B . n B 1 86 PRO 86 85 85 PRO PRO B . n B 1 87 GLU 87 86 86 GLU GLU B . n B 1 88 GLU 88 87 87 GLU GLU B . n B 1 89 THR 89 88 88 THR THR B . n B 1 90 ALA 90 89 89 ALA ALA B . n B 1 91 LEU 91 90 90 LEU LEU B . n B 1 92 VAL 92 91 91 VAL VAL B . n B 1 93 ILE 93 92 92 ILE ILE B . n B 1 94 ASN 94 93 93 ASN ASN B . n B 1 95 PRO 95 94 94 PRO PRO B . n B 1 96 GLN 96 95 95 GLN GLN B . n B 1 97 TYR 97 96 96 TYR TYR B . n B 1 98 TYR 98 97 97 TYR TYR B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ASN 100 99 99 ASN ASN B . n B 1 101 GLY 101 100 100 GLY GLY B . n B 1 102 PRO 102 101 101 PRO PRO B . n B 1 103 ARG 103 102 102 ARG ARG B . n B 1 104 ALA 104 103 103 ALA ALA B . n B 1 105 TYR 105 104 104 TYR TYR B . n B 1 106 THR 106 105 105 THR THR B . n B 1 107 ARG 107 106 106 ARG ARG B . n B 1 108 GLU 108 107 107 GLU GLU B . n B 1 109 LYS 109 108 108 LYS LYS B . n B 1 110 GLN 110 109 109 GLN GLN B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 ALA 112 111 111 ALA ALA B . n B 1 113 GLU 113 112 112 GLU GLU B . n B 1 114 TYR 114 113 113 TYR TYR B . n B 1 115 ASN 115 114 114 ASN ASN B . n B 1 116 VAL 116 115 115 VAL VAL B . n B 1 117 THR 117 116 116 THR THR B . n B 1 118 SER 118 117 117 SER SER B . n B 1 119 VAL 119 118 118 VAL VAL B . n B 1 120 VAL 120 119 119 VAL VAL B . n B 1 121 GLY 121 120 120 GLY GLY B . n B 1 122 THR 122 121 121 THR THR B . n B 1 123 ARG 123 122 122 ARG ARG B . n B 1 124 PHE 124 123 123 PHE PHE B . n B 1 125 GLU 125 124 124 GLU GLU B . n B 1 126 VAL 126 125 125 VAL VAL B . n B 1 127 LYS 127 126 126 LYS LYS B . n B 1 128 TYR 128 127 127 TYR TYR B . n B 1 129 THR 129 128 128 THR THR B . n B 1 130 VAL 130 129 129 VAL VAL B . n B 1 131 VAL 131 130 130 VAL VAL B . n B 1 132 GLU 132 131 131 GLU GLU B . n B 1 133 GLY 133 132 132 GLY GLY B . n B 1 134 ASN 134 133 133 ASN ASN B . n B 1 135 ASN 135 134 134 ASN ASN B . n B 1 136 LEU 136 135 135 LEU LEU B . n B 1 137 GLU 137 136 136 GLU GLU B . n B 1 138 ALA 138 137 137 ALA ALA B . n B 1 139 ASN 139 138 138 ASN ASN B . n B 1 140 VAL 140 139 139 VAL VAL B . n B 1 141 ILE 141 140 140 ILE ILE B . n B 1 142 PHE 142 141 141 PHE PHE B . n B 1 143 SER 143 142 142 SER SER B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 A2G 1 C A2G 1 A NGA 146 n C 2 GAL 2 C GAL 2 A GAL 147 n D 2 A2G 1 D A2G 1 B NGA 146 n D 2 GAL 2 D GAL 2 B GAL 147 n E 3 NAG 1 E NAG 1 A CBS 144 n E 3 NAG 2 E NAG 2 A CBS 144 n F 3 NAG 1 F NAG 1 B CBS 144 n F 3 NAG 2 F NAG 2 B CBS 144 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 143 5 HOH HOH A . G 4 HOH 2 145 6 HOH HOH A . G 4 HOH 3 148 8 HOH HOH A . G 4 HOH 4 149 11 HOH HOH A . G 4 HOH 5 150 19 HOH HOH A . G 4 HOH 6 151 24 HOH HOH A . G 4 HOH 7 152 25 HOH HOH A . G 4 HOH 8 153 27 HOH HOH A . G 4 HOH 9 154 32 HOH HOH A . G 4 HOH 10 155 33 HOH HOH A . G 4 HOH 11 156 34 HOH HOH A . G 4 HOH 12 157 36 HOH HOH A . G 4 HOH 13 158 37 HOH HOH A . G 4 HOH 14 159 40 HOH HOH A . G 4 HOH 15 160 41 HOH HOH A . G 4 HOH 16 161 43 HOH HOH A . G 4 HOH 17 162 45 HOH HOH A . G 4 HOH 18 163 49 HOH HOH A . G 4 HOH 19 164 50 HOH HOH A . G 4 HOH 20 165 51 HOH HOH A . G 4 HOH 21 166 52 HOH HOH A . G 4 HOH 22 167 53 HOH HOH A . G 4 HOH 23 168 57 HOH HOH A . G 4 HOH 24 169 61 HOH HOH A . G 4 HOH 25 170 62 HOH HOH A . G 4 HOH 26 171 66 HOH HOH A . G 4 HOH 27 172 74 HOH HOH A . G 4 HOH 28 173 77 HOH HOH A . G 4 HOH 29 174 80 HOH HOH A . G 4 HOH 30 175 82 HOH HOH A . G 4 HOH 31 176 83 HOH HOH A . G 4 HOH 32 177 84 HOH HOH A . G 4 HOH 33 178 86 HOH HOH A . G 4 HOH 34 179 88 HOH HOH A . G 4 HOH 35 180 91 HOH HOH A . G 4 HOH 36 181 93 HOH HOH A . G 4 HOH 37 182 94 HOH HOH A . G 4 HOH 38 183 98 HOH HOH A . G 4 HOH 39 184 100 HOH HOH A . G 4 HOH 40 185 111 HOH HOH A . G 4 HOH 41 186 112 HOH HOH A . G 4 HOH 42 187 114 HOH HOH A . H 4 HOH 1 143 1 HOH HOH B . H 4 HOH 2 145 2 HOH HOH B . H 4 HOH 3 148 3 HOH HOH B . H 4 HOH 4 149 4 HOH HOH B . H 4 HOH 5 150 7 HOH HOH B . H 4 HOH 6 151 9 HOH HOH B . H 4 HOH 7 152 10 HOH HOH B . H 4 HOH 8 153 12 HOH HOH B . H 4 HOH 9 154 13 HOH HOH B . H 4 HOH 10 155 14 HOH HOH B . H 4 HOH 11 156 15 HOH HOH B . H 4 HOH 12 157 16 HOH HOH B . H 4 HOH 13 158 17 HOH HOH B . H 4 HOH 14 159 18 HOH HOH B . H 4 HOH 15 160 20 HOH HOH B . H 4 HOH 16 161 21 HOH HOH B . H 4 HOH 17 162 22 HOH HOH B . H 4 HOH 18 163 23 HOH HOH B . H 4 HOH 19 164 26 HOH HOH B . H 4 HOH 20 165 28 HOH HOH B . H 4 HOH 21 166 29 HOH HOH B . H 4 HOH 22 167 30 HOH HOH B . H 4 HOH 23 168 31 HOH HOH B . H 4 HOH 24 169 35 HOH HOH B . H 4 HOH 25 170 38 HOH HOH B . H 4 HOH 26 171 39 HOH HOH B . H 4 HOH 27 172 42 HOH HOH B . H 4 HOH 28 173 44 HOH HOH B . H 4 HOH 29 174 46 HOH HOH B . H 4 HOH 30 175 47 HOH HOH B . H 4 HOH 31 176 48 HOH HOH B . H 4 HOH 32 177 54 HOH HOH B . H 4 HOH 33 178 55 HOH HOH B . H 4 HOH 34 179 56 HOH HOH B . H 4 HOH 35 180 58 HOH HOH B . H 4 HOH 36 181 59 HOH HOH B . H 4 HOH 37 182 60 HOH HOH B . H 4 HOH 38 183 63 HOH HOH B . H 4 HOH 39 184 64 HOH HOH B . H 4 HOH 40 185 65 HOH HOH B . H 4 HOH 41 186 67 HOH HOH B . H 4 HOH 42 187 68 HOH HOH B . H 4 HOH 43 188 69 HOH HOH B . H 4 HOH 44 189 70 HOH HOH B . H 4 HOH 45 190 71 HOH HOH B . H 4 HOH 46 191 72 HOH HOH B . H 4 HOH 47 192 73 HOH HOH B . H 4 HOH 48 193 75 HOH HOH B . H 4 HOH 49 194 76 HOH HOH B . H 4 HOH 50 195 78 HOH HOH B . H 4 HOH 51 196 79 HOH HOH B . H 4 HOH 52 197 81 HOH HOH B . H 4 HOH 53 198 85 HOH HOH B . H 4 HOH 54 199 87 HOH HOH B . H 4 HOH 55 200 89 HOH HOH B . H 4 HOH 56 201 90 HOH HOH B . H 4 HOH 57 202 92 HOH HOH B . H 4 HOH 58 203 95 HOH HOH B . H 4 HOH 59 204 96 HOH HOH B . H 4 HOH 60 205 97 HOH HOH B . H 4 HOH 61 206 99 HOH HOH B . H 4 HOH 62 207 101 HOH HOH B . H 4 HOH 63 208 102 HOH HOH B . H 4 HOH 64 209 103 HOH HOH B . H 4 HOH 65 210 104 HOH HOH B . H 4 HOH 66 211 105 HOH HOH B . H 4 HOH 67 212 106 HOH HOH B . H 4 HOH 68 213 107 HOH HOH B . H 4 HOH 69 214 108 HOH HOH B . H 4 HOH 70 215 109 HOH HOH B . H 4 HOH 71 216 110 HOH HOH B . H 4 HOH 72 217 113 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3QDY _cell.length_a 124.045 _cell.length_b 124.045 _cell.length_c 104.473 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDY _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 3QDY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.66 _exptl_crystal.density_percent_sol 66.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M ammonium acetate, 0.1M sodium acetate, 30% PEG 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2004-10-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3QDY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 29.3 _reflns.d_resolution_high 2.0 _reflns.number_obs 32555 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.285 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.9 _reflns_shell.pdbx_redundancy 7.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QDY _refine.ls_number_reflns_obs 30853 _refine.ls_number_reflns_all 30853 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.27 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.19292 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19220 _refine.ls_R_factor_R_free 0.20610 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1646 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 22.502 _refine.aniso_B[1][1] 0.68 _refine.aniso_B[2][2] 0.68 _refine.aniso_B[3][3] -1.02 _refine.aniso_B[1][2] 0.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 3QDW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.084 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.665 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2240 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 2436 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 29.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.022 ? 2374 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.815 1.977 ? 3222 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.275 5.000 ? 282 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.781 23.208 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.154 15.000 ? 366 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.321 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 372 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 1770 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.241 1.500 ? 1404 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.164 2.000 ? 2272 'X-RAY DIFFRACTION' ? r_scbond_it 5.140 3.000 ? 970 'X-RAY DIFFRACTION' ? r_scangle_it 7.360 4.500 ? 950 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 2208 _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.239 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3QDY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3QDY _struct.title 'Structure of the hexagonal form of the Boletus edulis lectin in complex with T-antigen disaccharide and N,N-diacetyl chitobiose' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QDY _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text ;Boletus edulis, lectin, mushroom, T-antigen disaccharide, N, N-diacetyl chitobiose, Carbohydrate, Sugar Binding, SUGAR BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3QDY _struct_ref.pdbx_db_accession 3QDY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QDY A 1 ? 143 ? 3QDY 0 ? 142 ? 0 142 2 1 3QDY B 1 ? 143 ? 3QDY 0 ? 142 ? 0 142 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11790 ? 1 MORE -17 ? 1 'SSA (A^2)' 20840 ? 2 'ABSA (A^2)' 4320 ? 2 MORE -3 ? 2 'SSA (A^2)' 12010 ? 3 'ABSA (A^2)' 4240 ? 3 MORE -1 ? 3 'SSA (A^2)' 12060 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H 2 1,2 A,C,E,G 3 1,2 B,D,F,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 62.0225000000 -0.8660254038 -0.5000000000 0.0000000000 107.4261212124 0.0000000000 0.0000000000 -1.0000000000 -17.4121666667 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? GLY A 17 ? ASN A 12 GLY A 16 5 ? 5 HELX_P HELX_P2 2 HIS A 28 ? ASN A 31 ? HIS A 27 ASN A 30 5 ? 4 HELX_P HELX_P3 3 THR A 89 ? ASN A 94 ? THR A 88 ASN A 93 1 ? 6 HELX_P HELX_P4 4 PRO A 95 ? TYR A 98 ? PRO A 94 TYR A 97 5 ? 4 HELX_P HELX_P5 5 ARG A 103 ? LYS A 109 ? ARG A 102 LYS A 108 1 ? 7 HELX_P HELX_P6 6 ASN B 13 ? GLY B 17 ? ASN B 12 GLY B 16 5 ? 5 HELX_P HELX_P7 7 THR B 89 ? ASN B 94 ? THR B 88 ASN B 93 1 ? 6 HELX_P HELX_P8 8 PRO B 95 ? TYR B 98 ? PRO B 94 TYR B 97 5 ? 4 HELX_P HELX_P9 9 ARG B 103 ? LYS B 109 ? ARG B 102 LYS B 108 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A THR 2 N ? ? A ACE 0 A THR 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B THR 2 N ? ? B ACE 0 B THR 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? C A2G . O3 ? ? ? 1_555 C GAL . C1 ? ? C A2G 1 C GAL 2 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale4 covale both ? D A2G . O3 ? ? ? 1_555 D GAL . C1 ? ? D A2G 1 D GAL 2 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale5 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale6 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.430 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? THR A 2 ? ACE A 0 ? 1_555 THR A 1 ? 1_555 . . THR 7 ACE None 'Terminal acetylation' 2 ACE B 1 ? THR B 2 ? ACE B 0 ? 1_555 THR B 1 ? 1_555 . . THR 7 ACE None 'Terminal acetylation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 6 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 33 ? ALA A 38 ? GLY A 32 ALA A 37 A 2 THR A 41 ? MET A 46 ? THR A 40 MET A 45 A 3 TYR A 3 ? GLN A 11 ? TYR A 2 GLN A 10 A 4 ASN A 135 ? SER A 143 ? ASN A 134 SER A 142 A 5 ARG A 123 ? VAL A 130 ? ARG A 122 VAL A 129 A 6 GLU A 113 ? THR A 117 ? GLU A 112 THR A 116 B 1 PHE A 19 ? VAL A 26 ? PHE A 18 VAL A 25 B 2 SER A 52 ? SER A 59 ? SER A 51 SER A 58 B 3 LEU A 64 ? HIS A 72 ? LEU A 63 HIS A 71 B 4 LYS A 75 ? VAL A 81 ? LYS A 74 VAL A 80 C 1 GLY B 33 ? ALA B 38 ? GLY B 32 ALA B 37 C 2 THR B 41 ? MET B 46 ? THR B 40 MET B 45 C 3 TYR B 3 ? GLN B 11 ? TYR B 2 GLN B 10 C 4 ASN B 135 ? PHE B 142 ? ASN B 134 PHE B 141 C 5 ARG B 123 ? VAL B 130 ? ARG B 122 VAL B 129 C 6 GLU B 113 ? THR B 117 ? GLU B 112 THR B 116 D 1 PHE B 19 ? VAL B 26 ? PHE B 18 VAL B 25 D 2 SER B 52 ? SER B 59 ? SER B 51 SER B 58 D 3 LEU B 64 ? HIS B 72 ? LEU B 63 HIS B 71 D 4 LYS B 75 ? VAL B 81 ? LYS B 74 VAL B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 36 ? N SER A 35 O THR A 43 ? O THR A 42 A 2 3 O MET A 46 ? O MET A 45 N TYR A 3 ? N TYR A 2 A 3 4 N PHE A 10 ? N PHE A 9 O VAL A 140 ? O VAL A 139 A 4 5 O SER A 143 ? O SER A 142 N ARG A 123 ? N ARG A 122 A 5 6 O VAL A 126 ? O VAL A 125 N TYR A 114 ? N TYR A 113 B 1 2 N VAL A 22 ? N VAL A 21 O ARG A 56 ? O ARG A 55 B 2 3 N PHE A 57 ? N PHE A 56 O ILE A 65 ? O ILE A 64 B 3 4 N HIS A 72 ? N HIS A 71 O LYS A 75 ? O LYS A 74 C 1 2 N SER B 36 ? N SER B 35 O THR B 43 ? O THR B 42 C 2 3 O MET B 46 ? O MET B 45 N TYR B 3 ? N TYR B 2 C 3 4 N PHE B 10 ? N PHE B 9 O VAL B 140 ? O VAL B 139 C 4 5 O ILE B 141 ? O ILE B 140 N GLU B 125 ? N GLU B 124 C 5 6 O VAL B 126 ? O VAL B 125 N TYR B 114 ? N TYR B 113 D 1 2 N VAL B 22 ? N VAL B 21 O ARG B 56 ? O ARG B 55 D 2 3 N PHE B 57 ? N PHE B 56 O ILE B 65 ? O ILE B 64 D 3 4 N HIS B 72 ? N HIS B 71 O LYS B 75 ? O LYS B 74 # _pdbx_entry_details.entry_id 3QDY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 73 ? ? 81.02 6.93 2 1 ASN B 134 ? ? -115.34 78.70 # _pdbx_molecule_features.prd_id PRD_900084 _pdbx_molecule_features.name 'Thomsen-Friedenreich antigen' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900084 C 2 PRD_900084 D # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 41.0338 48.3655 3.4171 0.0561 0.2504 0.1195 0.0692 -0.0374 -0.0776 1.2585 0.6978 0.1048 -0.5083 -0.1655 0.0707 -0.0402 -0.3884 0.0155 -0.1005 0.1522 0.0231 0.0344 0.1245 -0.1120 'X-RAY DIFFRACTION' 2 ? refined 9.6990 55.0365 -16.2176 0.0803 0.0805 0.0845 0.0090 -0.0217 -0.0075 0.5884 0.0626 0.5854 -0.0868 0.0407 -0.0403 0.0894 0.0356 -0.0374 -0.0102 -0.0241 0.0035 0.0578 -0.0186 -0.0653 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 147 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 ? ? B 147 ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ACE C C N N 31 ACE O O N N 32 ACE CH3 C N N 33 ACE H H N N 34 ACE H1 H N N 35 ACE H2 H N N 36 ACE H3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 GAL C1 C N R 125 GAL C2 C N R 126 GAL C3 C N S 127 GAL C4 C N R 128 GAL C5 C N R 129 GAL C6 C N N 130 GAL O1 O N N 131 GAL O2 O N N 132 GAL O3 O N N 133 GAL O4 O N N 134 GAL O5 O N N 135 GAL O6 O N N 136 GAL H1 H N N 137 GAL H2 H N N 138 GAL H3 H N N 139 GAL H4 H N N 140 GAL H5 H N N 141 GAL H61 H N N 142 GAL H62 H N N 143 GAL HO1 H N N 144 GAL HO2 H N N 145 GAL HO3 H N N 146 GAL HO4 H N N 147 GAL HO6 H N N 148 GLN N N N N 149 GLN CA C N S 150 GLN C C N N 151 GLN O O N N 152 GLN CB C N N 153 GLN CG C N N 154 GLN CD C N N 155 GLN OE1 O N N 156 GLN NE2 N N N 157 GLN OXT O N N 158 GLN H H N N 159 GLN H2 H N N 160 GLN HA H N N 161 GLN HB2 H N N 162 GLN HB3 H N N 163 GLN HG2 H N N 164 GLN HG3 H N N 165 GLN HE21 H N N 166 GLN HE22 H N N 167 GLN HXT H N N 168 GLU N N N N 169 GLU CA C N S 170 GLU C C N N 171 GLU O O N N 172 GLU CB C N N 173 GLU CG C N N 174 GLU CD C N N 175 GLU OE1 O N N 176 GLU OE2 O N N 177 GLU OXT O N N 178 GLU H H N N 179 GLU H2 H N N 180 GLU HA H N N 181 GLU HB2 H N N 182 GLU HB3 H N N 183 GLU HG2 H N N 184 GLU HG3 H N N 185 GLU HE2 H N N 186 GLU HXT H N N 187 GLY N N N N 188 GLY CA C N N 189 GLY C C N N 190 GLY O O N N 191 GLY OXT O N N 192 GLY H H N N 193 GLY H2 H N N 194 GLY HA2 H N N 195 GLY HA3 H N N 196 GLY HXT H N N 197 HIS N N N N 198 HIS CA C N S 199 HIS C C N N 200 HIS O O N N 201 HIS CB C N N 202 HIS CG C Y N 203 HIS ND1 N Y N 204 HIS CD2 C Y N 205 HIS CE1 C Y N 206 HIS NE2 N Y N 207 HIS OXT O N N 208 HIS H H N N 209 HIS H2 H N N 210 HIS HA H N N 211 HIS HB2 H N N 212 HIS HB3 H N N 213 HIS HD1 H N N 214 HIS HD2 H N N 215 HIS HE1 H N N 216 HIS HE2 H N N 217 HIS HXT H N N 218 HOH O O N N 219 HOH H1 H N N 220 HOH H2 H N N 221 ILE N N N N 222 ILE CA C N S 223 ILE C C N N 224 ILE O O N N 225 ILE CB C N S 226 ILE CG1 C N N 227 ILE CG2 C N N 228 ILE CD1 C N N 229 ILE OXT O N N 230 ILE H H N N 231 ILE H2 H N N 232 ILE HA H N N 233 ILE HB H N N 234 ILE HG12 H N N 235 ILE HG13 H N N 236 ILE HG21 H N N 237 ILE HG22 H N N 238 ILE HG23 H N N 239 ILE HD11 H N N 240 ILE HD12 H N N 241 ILE HD13 H N N 242 ILE HXT H N N 243 LEU N N N N 244 LEU CA C N S 245 LEU C C N N 246 LEU O O N N 247 LEU CB C N N 248 LEU CG C N N 249 LEU CD1 C N N 250 LEU CD2 C N N 251 LEU OXT O N N 252 LEU H H N N 253 LEU H2 H N N 254 LEU HA H N N 255 LEU HB2 H N N 256 LEU HB3 H N N 257 LEU HG H N N 258 LEU HD11 H N N 259 LEU HD12 H N N 260 LEU HD13 H N N 261 LEU HD21 H N N 262 LEU HD22 H N N 263 LEU HD23 H N N 264 LEU HXT H N N 265 LYS N N N N 266 LYS CA C N S 267 LYS C C N N 268 LYS O O N N 269 LYS CB C N N 270 LYS CG C N N 271 LYS CD C N N 272 LYS CE C N N 273 LYS NZ N N N 274 LYS OXT O N N 275 LYS H H N N 276 LYS H2 H N N 277 LYS HA H N N 278 LYS HB2 H N N 279 LYS HB3 H N N 280 LYS HG2 H N N 281 LYS HG3 H N N 282 LYS HD2 H N N 283 LYS HD3 H N N 284 LYS HE2 H N N 285 LYS HE3 H N N 286 LYS HZ1 H N N 287 LYS HZ2 H N N 288 LYS HZ3 H N N 289 LYS HXT H N N 290 MET N N N N 291 MET CA C N S 292 MET C C N N 293 MET O O N N 294 MET CB C N N 295 MET CG C N N 296 MET SD S N N 297 MET CE C N N 298 MET OXT O N N 299 MET H H N N 300 MET H2 H N N 301 MET HA H N N 302 MET HB2 H N N 303 MET HB3 H N N 304 MET HG2 H N N 305 MET HG3 H N N 306 MET HE1 H N N 307 MET HE2 H N N 308 MET HE3 H N N 309 MET HXT H N N 310 NAG C1 C N R 311 NAG C2 C N R 312 NAG C3 C N R 313 NAG C4 C N S 314 NAG C5 C N R 315 NAG C6 C N N 316 NAG C7 C N N 317 NAG C8 C N N 318 NAG N2 N N N 319 NAG O1 O N N 320 NAG O3 O N N 321 NAG O4 O N N 322 NAG O5 O N N 323 NAG O6 O N N 324 NAG O7 O N N 325 NAG H1 H N N 326 NAG H2 H N N 327 NAG H3 H N N 328 NAG H4 H N N 329 NAG H5 H N N 330 NAG H61 H N N 331 NAG H62 H N N 332 NAG H81 H N N 333 NAG H82 H N N 334 NAG H83 H N N 335 NAG HN2 H N N 336 NAG HO1 H N N 337 NAG HO3 H N N 338 NAG HO4 H N N 339 NAG HO6 H N N 340 PHE N N N N 341 PHE CA C N S 342 PHE C C N N 343 PHE O O N N 344 PHE CB C N N 345 PHE CG C Y N 346 PHE CD1 C Y N 347 PHE CD2 C Y N 348 PHE CE1 C Y N 349 PHE CE2 C Y N 350 PHE CZ C Y N 351 PHE OXT O N N 352 PHE H H N N 353 PHE H2 H N N 354 PHE HA H N N 355 PHE HB2 H N N 356 PHE HB3 H N N 357 PHE HD1 H N N 358 PHE HD2 H N N 359 PHE HE1 H N N 360 PHE HE2 H N N 361 PHE HZ H N N 362 PHE HXT H N N 363 PRO N N N N 364 PRO CA C N S 365 PRO C C N N 366 PRO O O N N 367 PRO CB C N N 368 PRO CG C N N 369 PRO CD C N N 370 PRO OXT O N N 371 PRO H H N N 372 PRO HA H N N 373 PRO HB2 H N N 374 PRO HB3 H N N 375 PRO HG2 H N N 376 PRO HG3 H N N 377 PRO HD2 H N N 378 PRO HD3 H N N 379 PRO HXT H N N 380 SER N N N N 381 SER CA C N S 382 SER C C N N 383 SER O O N N 384 SER CB C N N 385 SER OG O N N 386 SER OXT O N N 387 SER H H N N 388 SER H2 H N N 389 SER HA H N N 390 SER HB2 H N N 391 SER HB3 H N N 392 SER HG H N N 393 SER HXT H N N 394 THR N N N N 395 THR CA C N S 396 THR C C N N 397 THR O O N N 398 THR CB C N R 399 THR OG1 O N N 400 THR CG2 C N N 401 THR OXT O N N 402 THR H H N N 403 THR H2 H N N 404 THR HA H N N 405 THR HB H N N 406 THR HG1 H N N 407 THR HG21 H N N 408 THR HG22 H N N 409 THR HG23 H N N 410 THR HXT H N N 411 TRP N N N N 412 TRP CA C N S 413 TRP C C N N 414 TRP O O N N 415 TRP CB C N N 416 TRP CG C Y N 417 TRP CD1 C Y N 418 TRP CD2 C Y N 419 TRP NE1 N Y N 420 TRP CE2 C Y N 421 TRP CE3 C Y N 422 TRP CZ2 C Y N 423 TRP CZ3 C Y N 424 TRP CH2 C Y N 425 TRP OXT O N N 426 TRP H H N N 427 TRP H2 H N N 428 TRP HA H N N 429 TRP HB2 H N N 430 TRP HB3 H N N 431 TRP HD1 H N N 432 TRP HE1 H N N 433 TRP HE3 H N N 434 TRP HZ2 H N N 435 TRP HZ3 H N N 436 TRP HH2 H N N 437 TRP HXT H N N 438 TYR N N N N 439 TYR CA C N S 440 TYR C C N N 441 TYR O O N N 442 TYR CB C N N 443 TYR CG C Y N 444 TYR CD1 C Y N 445 TYR CD2 C Y N 446 TYR CE1 C Y N 447 TYR CE2 C Y N 448 TYR CZ C Y N 449 TYR OH O N N 450 TYR OXT O N N 451 TYR H H N N 452 TYR H2 H N N 453 TYR HA H N N 454 TYR HB2 H N N 455 TYR HB3 H N N 456 TYR HD1 H N N 457 TYR HD2 H N N 458 TYR HE1 H N N 459 TYR HE2 H N N 460 TYR HH H N N 461 TYR HXT H N N 462 VAL N N N N 463 VAL CA C N S 464 VAL C C N N 465 VAL O O N N 466 VAL CB C N N 467 VAL CG1 C N N 468 VAL CG2 C N N 469 VAL OXT O N N 470 VAL H H N N 471 VAL H2 H N N 472 VAL HA H N N 473 VAL HB H N N 474 VAL HG11 H N N 475 VAL HG12 H N N 476 VAL HG13 H N N 477 VAL HG21 H N N 478 VAL HG22 H N N 479 VAL HG23 H N N 480 VAL HXT H N N 481 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ACE C O doub N N 31 ACE C CH3 sing N N 32 ACE C H sing N N 33 ACE CH3 H1 sing N N 34 ACE CH3 H2 sing N N 35 ACE CH3 H3 sing N N 36 ALA N CA sing N N 37 ALA N H sing N N 38 ALA N H2 sing N N 39 ALA CA C sing N N 40 ALA CA CB sing N N 41 ALA CA HA sing N N 42 ALA C O doub N N 43 ALA C OXT sing N N 44 ALA CB HB1 sing N N 45 ALA CB HB2 sing N N 46 ALA CB HB3 sing N N 47 ALA OXT HXT sing N N 48 ARG N CA sing N N 49 ARG N H sing N N 50 ARG N H2 sing N N 51 ARG CA C sing N N 52 ARG CA CB sing N N 53 ARG CA HA sing N N 54 ARG C O doub N N 55 ARG C OXT sing N N 56 ARG CB CG sing N N 57 ARG CB HB2 sing N N 58 ARG CB HB3 sing N N 59 ARG CG CD sing N N 60 ARG CG HG2 sing N N 61 ARG CG HG3 sing N N 62 ARG CD NE sing N N 63 ARG CD HD2 sing N N 64 ARG CD HD3 sing N N 65 ARG NE CZ sing N N 66 ARG NE HE sing N N 67 ARG CZ NH1 sing N N 68 ARG CZ NH2 doub N N 69 ARG NH1 HH11 sing N N 70 ARG NH1 HH12 sing N N 71 ARG NH2 HH21 sing N N 72 ARG NH2 HH22 sing N N 73 ARG OXT HXT sing N N 74 ASN N CA sing N N 75 ASN N H sing N N 76 ASN N H2 sing N N 77 ASN CA C sing N N 78 ASN CA CB sing N N 79 ASN CA HA sing N N 80 ASN C O doub N N 81 ASN C OXT sing N N 82 ASN CB CG sing N N 83 ASN CB HB2 sing N N 84 ASN CB HB3 sing N N 85 ASN CG OD1 doub N N 86 ASN CG ND2 sing N N 87 ASN ND2 HD21 sing N N 88 ASN ND2 HD22 sing N N 89 ASN OXT HXT sing N N 90 ASP N CA sing N N 91 ASP N H sing N N 92 ASP N H2 sing N N 93 ASP CA C sing N N 94 ASP CA CB sing N N 95 ASP CA HA sing N N 96 ASP C O doub N N 97 ASP C OXT sing N N 98 ASP CB CG sing N N 99 ASP CB HB2 sing N N 100 ASP CB HB3 sing N N 101 ASP CG OD1 doub N N 102 ASP CG OD2 sing N N 103 ASP OD2 HD2 sing N N 104 ASP OXT HXT sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 GAL C1 C2 sing N N 119 GAL C1 O1 sing N N 120 GAL C1 O5 sing N N 121 GAL C1 H1 sing N N 122 GAL C2 C3 sing N N 123 GAL C2 O2 sing N N 124 GAL C2 H2 sing N N 125 GAL C3 C4 sing N N 126 GAL C3 O3 sing N N 127 GAL C3 H3 sing N N 128 GAL C4 C5 sing N N 129 GAL C4 O4 sing N N 130 GAL C4 H4 sing N N 131 GAL C5 C6 sing N N 132 GAL C5 O5 sing N N 133 GAL C5 H5 sing N N 134 GAL C6 O6 sing N N 135 GAL C6 H61 sing N N 136 GAL C6 H62 sing N N 137 GAL O1 HO1 sing N N 138 GAL O2 HO2 sing N N 139 GAL O3 HO3 sing N N 140 GAL O4 HO4 sing N N 141 GAL O6 HO6 sing N N 142 GLN N CA sing N N 143 GLN N H sing N N 144 GLN N H2 sing N N 145 GLN CA C sing N N 146 GLN CA CB sing N N 147 GLN CA HA sing N N 148 GLN C O doub N N 149 GLN C OXT sing N N 150 GLN CB CG sing N N 151 GLN CB HB2 sing N N 152 GLN CB HB3 sing N N 153 GLN CG CD sing N N 154 GLN CG HG2 sing N N 155 GLN CG HG3 sing N N 156 GLN CD OE1 doub N N 157 GLN CD NE2 sing N N 158 GLN NE2 HE21 sing N N 159 GLN NE2 HE22 sing N N 160 GLN OXT HXT sing N N 161 GLU N CA sing N N 162 GLU N H sing N N 163 GLU N H2 sing N N 164 GLU CA C sing N N 165 GLU CA CB sing N N 166 GLU CA HA sing N N 167 GLU C O doub N N 168 GLU C OXT sing N N 169 GLU CB CG sing N N 170 GLU CB HB2 sing N N 171 GLU CB HB3 sing N N 172 GLU CG CD sing N N 173 GLU CG HG2 sing N N 174 GLU CG HG3 sing N N 175 GLU CD OE1 doub N N 176 GLU CD OE2 sing N N 177 GLU OE2 HE2 sing N N 178 GLU OXT HXT sing N N 179 GLY N CA sing N N 180 GLY N H sing N N 181 GLY N H2 sing N N 182 GLY CA C sing N N 183 GLY CA HA2 sing N N 184 GLY CA HA3 sing N N 185 GLY C O doub N N 186 GLY C OXT sing N N 187 GLY OXT HXT sing N N 188 HIS N CA sing N N 189 HIS N H sing N N 190 HIS N H2 sing N N 191 HIS CA C sing N N 192 HIS CA CB sing N N 193 HIS CA HA sing N N 194 HIS C O doub N N 195 HIS C OXT sing N N 196 HIS CB CG sing N N 197 HIS CB HB2 sing N N 198 HIS CB HB3 sing N N 199 HIS CG ND1 sing Y N 200 HIS CG CD2 doub Y N 201 HIS ND1 CE1 doub Y N 202 HIS ND1 HD1 sing N N 203 HIS CD2 NE2 sing Y N 204 HIS CD2 HD2 sing N N 205 HIS CE1 NE2 sing Y N 206 HIS CE1 HE1 sing N N 207 HIS NE2 HE2 sing N N 208 HIS OXT HXT sing N N 209 HOH O H1 sing N N 210 HOH O H2 sing N N 211 ILE N CA sing N N 212 ILE N H sing N N 213 ILE N H2 sing N N 214 ILE CA C sing N N 215 ILE CA CB sing N N 216 ILE CA HA sing N N 217 ILE C O doub N N 218 ILE C OXT sing N N 219 ILE CB CG1 sing N N 220 ILE CB CG2 sing N N 221 ILE CB HB sing N N 222 ILE CG1 CD1 sing N N 223 ILE CG1 HG12 sing N N 224 ILE CG1 HG13 sing N N 225 ILE CG2 HG21 sing N N 226 ILE CG2 HG22 sing N N 227 ILE CG2 HG23 sing N N 228 ILE CD1 HD11 sing N N 229 ILE CD1 HD12 sing N N 230 ILE CD1 HD13 sing N N 231 ILE OXT HXT sing N N 232 LEU N CA sing N N 233 LEU N H sing N N 234 LEU N H2 sing N N 235 LEU CA C sing N N 236 LEU CA CB sing N N 237 LEU CA HA sing N N 238 LEU C O doub N N 239 LEU C OXT sing N N 240 LEU CB CG sing N N 241 LEU CB HB2 sing N N 242 LEU CB HB3 sing N N 243 LEU CG CD1 sing N N 244 LEU CG CD2 sing N N 245 LEU CG HG sing N N 246 LEU CD1 HD11 sing N N 247 LEU CD1 HD12 sing N N 248 LEU CD1 HD13 sing N N 249 LEU CD2 HD21 sing N N 250 LEU CD2 HD22 sing N N 251 LEU CD2 HD23 sing N N 252 LEU OXT HXT sing N N 253 LYS N CA sing N N 254 LYS N H sing N N 255 LYS N H2 sing N N 256 LYS CA C sing N N 257 LYS CA CB sing N N 258 LYS CA HA sing N N 259 LYS C O doub N N 260 LYS C OXT sing N N 261 LYS CB CG sing N N 262 LYS CB HB2 sing N N 263 LYS CB HB3 sing N N 264 LYS CG CD sing N N 265 LYS CG HG2 sing N N 266 LYS CG HG3 sing N N 267 LYS CD CE sing N N 268 LYS CD HD2 sing N N 269 LYS CD HD3 sing N N 270 LYS CE NZ sing N N 271 LYS CE HE2 sing N N 272 LYS CE HE3 sing N N 273 LYS NZ HZ1 sing N N 274 LYS NZ HZ2 sing N N 275 LYS NZ HZ3 sing N N 276 LYS OXT HXT sing N N 277 MET N CA sing N N 278 MET N H sing N N 279 MET N H2 sing N N 280 MET CA C sing N N 281 MET CA CB sing N N 282 MET CA HA sing N N 283 MET C O doub N N 284 MET C OXT sing N N 285 MET CB CG sing N N 286 MET CB HB2 sing N N 287 MET CB HB3 sing N N 288 MET CG SD sing N N 289 MET CG HG2 sing N N 290 MET CG HG3 sing N N 291 MET SD CE sing N N 292 MET CE HE1 sing N N 293 MET CE HE2 sing N N 294 MET CE HE3 sing N N 295 MET OXT HXT sing N N 296 NAG C1 C2 sing N N 297 NAG C1 O1 sing N N 298 NAG C1 O5 sing N N 299 NAG C1 H1 sing N N 300 NAG C2 C3 sing N N 301 NAG C2 N2 sing N N 302 NAG C2 H2 sing N N 303 NAG C3 C4 sing N N 304 NAG C3 O3 sing N N 305 NAG C3 H3 sing N N 306 NAG C4 C5 sing N N 307 NAG C4 O4 sing N N 308 NAG C4 H4 sing N N 309 NAG C5 C6 sing N N 310 NAG C5 O5 sing N N 311 NAG C5 H5 sing N N 312 NAG C6 O6 sing N N 313 NAG C6 H61 sing N N 314 NAG C6 H62 sing N N 315 NAG C7 C8 sing N N 316 NAG C7 N2 sing N N 317 NAG C7 O7 doub N N 318 NAG C8 H81 sing N N 319 NAG C8 H82 sing N N 320 NAG C8 H83 sing N N 321 NAG N2 HN2 sing N N 322 NAG O1 HO1 sing N N 323 NAG O3 HO3 sing N N 324 NAG O4 HO4 sing N N 325 NAG O6 HO6 sing N N 326 PHE N CA sing N N 327 PHE N H sing N N 328 PHE N H2 sing N N 329 PHE CA C sing N N 330 PHE CA CB sing N N 331 PHE CA HA sing N N 332 PHE C O doub N N 333 PHE C OXT sing N N 334 PHE CB CG sing N N 335 PHE CB HB2 sing N N 336 PHE CB HB3 sing N N 337 PHE CG CD1 doub Y N 338 PHE CG CD2 sing Y N 339 PHE CD1 CE1 sing Y N 340 PHE CD1 HD1 sing N N 341 PHE CD2 CE2 doub Y N 342 PHE CD2 HD2 sing N N 343 PHE CE1 CZ doub Y N 344 PHE CE1 HE1 sing N N 345 PHE CE2 CZ sing Y N 346 PHE CE2 HE2 sing N N 347 PHE CZ HZ sing N N 348 PHE OXT HXT sing N N 349 PRO N CA sing N N 350 PRO N CD sing N N 351 PRO N H sing N N 352 PRO CA C sing N N 353 PRO CA CB sing N N 354 PRO CA HA sing N N 355 PRO C O doub N N 356 PRO C OXT sing N N 357 PRO CB CG sing N N 358 PRO CB HB2 sing N N 359 PRO CB HB3 sing N N 360 PRO CG CD sing N N 361 PRO CG HG2 sing N N 362 PRO CG HG3 sing N N 363 PRO CD HD2 sing N N 364 PRO CD HD3 sing N N 365 PRO OXT HXT sing N N 366 SER N CA sing N N 367 SER N H sing N N 368 SER N H2 sing N N 369 SER CA C sing N N 370 SER CA CB sing N N 371 SER CA HA sing N N 372 SER C O doub N N 373 SER C OXT sing N N 374 SER CB OG sing N N 375 SER CB HB2 sing N N 376 SER CB HB3 sing N N 377 SER OG HG sing N N 378 SER OXT HXT sing N N 379 THR N CA sing N N 380 THR N H sing N N 381 THR N H2 sing N N 382 THR CA C sing N N 383 THR CA CB sing N N 384 THR CA HA sing N N 385 THR C O doub N N 386 THR C OXT sing N N 387 THR CB OG1 sing N N 388 THR CB CG2 sing N N 389 THR CB HB sing N N 390 THR OG1 HG1 sing N N 391 THR CG2 HG21 sing N N 392 THR CG2 HG22 sing N N 393 THR CG2 HG23 sing N N 394 THR OXT HXT sing N N 395 TRP N CA sing N N 396 TRP N H sing N N 397 TRP N H2 sing N N 398 TRP CA C sing N N 399 TRP CA CB sing N N 400 TRP CA HA sing N N 401 TRP C O doub N N 402 TRP C OXT sing N N 403 TRP CB CG sing N N 404 TRP CB HB2 sing N N 405 TRP CB HB3 sing N N 406 TRP CG CD1 doub Y N 407 TRP CG CD2 sing Y N 408 TRP CD1 NE1 sing Y N 409 TRP CD1 HD1 sing N N 410 TRP CD2 CE2 doub Y N 411 TRP CD2 CE3 sing Y N 412 TRP NE1 CE2 sing Y N 413 TRP NE1 HE1 sing N N 414 TRP CE2 CZ2 sing Y N 415 TRP CE3 CZ3 doub Y N 416 TRP CE3 HE3 sing N N 417 TRP CZ2 CH2 doub Y N 418 TRP CZ2 HZ2 sing N N 419 TRP CZ3 CH2 sing Y N 420 TRP CZ3 HZ3 sing N N 421 TRP CH2 HH2 sing N N 422 TRP OXT HXT sing N N 423 TYR N CA sing N N 424 TYR N H sing N N 425 TYR N H2 sing N N 426 TYR CA C sing N N 427 TYR CA CB sing N N 428 TYR CA HA sing N N 429 TYR C O doub N N 430 TYR C OXT sing N N 431 TYR CB CG sing N N 432 TYR CB HB2 sing N N 433 TYR CB HB3 sing N N 434 TYR CG CD1 doub Y N 435 TYR CG CD2 sing Y N 436 TYR CD1 CE1 sing Y N 437 TYR CD1 HD1 sing N N 438 TYR CD2 CE2 doub Y N 439 TYR CD2 HD2 sing N N 440 TYR CE1 CZ doub Y N 441 TYR CE1 HE1 sing N N 442 TYR CE2 CZ sing Y N 443 TYR CE2 HE2 sing N N 444 TYR CZ OH sing N N 445 TYR OH HH sing N N 446 TYR OXT HXT sing N N 447 VAL N CA sing N N 448 VAL N H sing N N 449 VAL N H2 sing N N 450 VAL CA C sing N N 451 VAL CA CB sing N N 452 VAL CA HA sing N N 453 VAL C O doub N N 454 VAL C OXT sing N N 455 VAL CB CG1 sing N N 456 VAL CB CG2 sing N N 457 VAL CB HB sing N N 458 VAL CG1 HG11 sing N N 459 VAL CG1 HG12 sing N N 460 VAL CG1 HG13 sing N N 461 VAL CG2 HG21 sing N N 462 VAL CG2 HG22 sing N N 463 VAL CG2 HG23 sing N N 464 VAL OXT HXT sing N N 465 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 A2G 1 n 2 GAL 2 n 3 NAG 1 n 3 NAG 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QDW _pdbx_initial_refinement_model.details 'pdb entry 3QDW' # _atom_sites.entry_id 3QDY _atom_sites.fract_transf_matrix[1][1] 0.008062 _atom_sites.fract_transf_matrix[1][2] 0.004654 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009309 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_